Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006158.1

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Reverse (-)

14876 .. 15589

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggacgcaaaagctaagccaattgaagctaaaaggcgtgcacagcaggaggctcaatgttctacaaaagctgctgctagagctgatcggggaaagatacttgctcttcctggtagagctggaagacagtcttcagaaaagaaagaaactcctgcaattgtgtcttcagattcagtggttggttctcattgtacgcagtttgatgttaaaagccaagtagacaaaatcatagctcaacatgaatgcggctctcggctaattcctgatcatgtcaagtcaaccatgcatcctgccatttatgagttcggagtgaagtatttggctggggaaatatctgggggtaatgctcgctgtattgcaatgcttagagcgtttcagggagccattagagactactcgacaccaaaagacaaaaatcttgtccaagacttaccagcaaaaattggtagctatgtctcatttttaactcggtgcaagccactctctattagaatgggaactgcaattaggtttctaaagagtcatctttcccaagtgatggggttaagcctttccgagtcagaaacaaagttcacactctatcaagaaattgactgttttataaatgataagatcatttttgctgataaggtgatagctagtcatgctgctacaaatattagggatggggatgttcttcttacatatggatattcgaatgtcgttgagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

237

Amino Acids

25.96

Weight (kDa)

9.18

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	111 - 236	1.2e-18	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	117, 150
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	8 cut(s)	14, 29, 71, 83, 119, 233, 450, 638
AluI	AGCT	8 cut(s)	14, 29, 71, 83, 119, 233, 450, 638
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	384, 460, 701
Alw44I	GTGCAC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	71, 74, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AsuHPI	GGTGA	1 cut(s)	643
AsuII	TTCGAA	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	43
BbsI	GAAGAC	3 cut(s)	123, 130, 156
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	58, 61, 634
BccI	CCATC	2 cut(s)	532, 659
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	384, 460, 701
BfaI	CTAG	2 cut(s)	78, 639
BisI	GCNGC	4 cut(s)	72, 75, 247, 648
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	4 cut(s)	73, 76, 248, 649
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	3 cut(s)	123, 130, 156
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	286, 670, 676
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMI	GCAATG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	58, 61, 634
BseYI	CCCAGC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	3 cut(s)	384, 460, 701
BsmI	GAATGC	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	85, 265, 612
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	366
BssMI	GATC	3 cut(s)	85, 265, 612
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	129, 596
Bst6I	CTCTTC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	3 cut(s)	39, 349, 476
BstDEI	CTNAG	2 cut(s)	15, 365
BstF5I	GGATG	3 cut(s)	286, 670, 676
BstKTI	GATC	3 cut(s)	88, 268, 615
BstMAI	GTCTC	3 cut(s)	384, 460, 701
BstMBI	GATC	3 cut(s)	85, 265, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 80, 644
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	58, 61, 634
BstV2I	GAAGAC	3 cut(s)	123, 130, 156
BtsCI	GGATG	3 cut(s)	286, 670, 676
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	3 cut(s)	39, 349, 476
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	4 cut(s)	239, 269, 283, 644
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	15, 365
DpnI	GATC	3 cut(s)	87, 267, 614
DpnII	GATC	3 cut(s)	85, 265, 612
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	117, 150
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	288
FaeI	CATG	4 cut(s)	242, 272, 286, 647
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	4 cut(s)	238, 268, 282, 643
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	72, 75, 247, 648
FokI	GGATG	3 cut(s)	273, 677, 683
Fsp4HI	GCNGC	4 cut(s)	72, 75, 247, 648
FspBI	CTAG	2 cut(s)	78, 639
GluI	GCNGC	4 cut(s)	72, 75, 247, 648
GsaI	CCCAGC	1 cut(s)	327
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	242, 272, 286, 647
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	3 cut(s)	170, 520, 557
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	4 cut(s)	41, 220, 279, 573
Hpy188I	TCNGA	5 cut(s)	136, 169, 308, 556, 562
Hpy188III	TCNNGA	2 cut(s)	263, 584
Hpy8I	GTNNAC	4 cut(s)	41, 220, 279, 573
HpyCH4III	ACNGT	2 cut(s)	129, 596
HpyCH4V	TGCA	6 cut(s)	41, 155, 286, 359, 474, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 80, 644
HpyF3I	CTNAG	2 cut(s)	15, 365
Hsp92II	CATG	4 cut(s)	242, 272, 286, 647
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	85, 265, 612
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	58, 61, 634
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	78, 639
MalI	GATC	3 cut(s)	87, 267, 614
MboI	GATC	3 cut(s)	85, 265, 612
MboII	GAAGA	5 cut(s)	98, 123, 135, 156, 668
MfeI	CAATTG	2 cut(s)	21, 156
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	6 cut(s)	21, 156, 258, 441, 504, 588
MlyI	GAGTC	2 cut(s)	529, 566
MnlI	CCTC	1 cut(s)	43
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	3 cut(s)	207, 464, 545
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	2 cut(s)	21, 156
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	43, 80, 644
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	3 cut(s)	85, 265, 612
NlaIII	CATG	4 cut(s)	242, 272, 286, 647
NlaIV	GGNNCC	1 cut(s)	382
NmeAIII	GCCGAG	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	695
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	4 cut(s)	73, 76, 248, 649
PleI	GAGTC	2 cut(s)	528, 565
PpsI	GAGTC	2 cut(s)	528, 565
PsiI	TTATAA	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	382
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	207, 464, 545
SatI	GCNGC	4 cut(s)	72, 75, 247, 648
Sau3AI	GATC	3 cut(s)	85, 265, 612
SchI	GAGTC	2 cut(s)	529, 566
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	295
SfuI	TTCGAA	1 cut(s)	695
Sse9I	AATT	6 cut(s)	21, 156, 258, 441, 504, 588
SsiI	CCGC	1 cut(s)	246
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	78, 639
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	129, 596
TaqI	TCGA	2 cut(s)	398, 695
TasI	AATT	6 cut(s)	21, 156, 258, 441, 504, 588
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	3 cut(s)	207, 464, 545
Tru9I	TTAA	3 cut(s)	207, 464, 545
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	3 cut(s)	71, 74, 647
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	538
VneI	GTGCAC	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	78, 639
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.