Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006220.1

Orthogroup ID

OG0003096

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1749

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1075 bp

tatattctaccaccattagttgtggaaacgctaaatgccccgaggatcagaagctcagccctcagagttgtcagtgtgcatatccgtttgaaggaacactgtactttagagcacccactttcagggatttatcagatgcaaataagtttcactccctagaaatgagcctgtggtcgaaacttggcctcaatcctggttcagttgctcttgagaaccctttcttcaacattgatgactatcttcaaatacagttggcactctttccgtctatgggaacctattttaataggtcagagattctgaggattggttttgatctgagcaatcaaacttacaagccgcctgctgagtttggtccctatatttttattccagctccttatactttccgggccgcgcataagaaatctgtaagcactggtgttgtcattgggatagcaattggttgtacctttctggttttgggcttagtgggagtcggaatatatgccattcggcaaaaaaaacgtgcagaaagagccattggattaagcagaccatttgcttcttgggcacccagcggaaaagatagtgggggtgcaccacagttaaagggagcaagatggttttcttatgaggagcttaagaagtgcaccaataatttctctgacaataatgagataggatccggcggctacggcaaggtttacaggggcatgtttgctgatggactagttgtggcaatcaaaagagctcagcaaggatcaatgcagggtggtcttgagttcaagactgaaattgaattgctctcacgagttcatcacaaaaatcttgtcggtcttgtcgggttttgttttgaacaaggagaacagatgctggtttacgaatatatgcccaatggaacacttagggaaagcttgtcagggagatctggcattcatctcgactggaagcgaagactccgcatcactcttggctcagcaagaggactagcatacctacatgagcttgcaaaccctcctataatccatagagatattaaaaccaccaatattctattggatgaacatttaacggcaaaggttgcagattttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

39.7

Weight (kDa)

9.03

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79620 AT1G79620 AT1G79620 AT1G79620 AT1G79620
fragaria_vesca	FvH4_6g09020 FvH4_6g09020
malus_domestica	MD04G1181800.v1.1 MD04G1182200.v1.1 MD04G1183000.v1.1 MD04G1183100.v1.1 MD12G1196600.v1.1
prunus_persica	Prupe.6G301100_v2.0.a1 Prupe.6G301100_v2.0.a1 Prupe.6G301200_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1
pyrus_communis	pycom04g16070 pycom04g16150 pycom04g16170 pycom12g18280
rosa_chinensis	RchiOBHm_Chr3g0459271
rosa_laevigata	RLG00000025098
rosa_multiflora	Rmu_sc0006220.1_g000001 Rmu_sc0010702.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420350
rosa_rugosa	Rorug03G0034900 Rorug03G0035000
rosa_samantha	Rh3AG092700 Rh3BG095800 Rh3CG096800 Rh3DG096400
rosa_wichuraiana	Rw3G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	552
AccII	CGCG	1 cut(s)	397
AciI	CCGC	5 cut(s)	340, 395, 560, 671, 942
AclWI	GGATC	4 cut(s)	53, 659, 672, 750
AfaI	GTAC	2 cut(s)	103, 450
AfiI	CCNNNNNNNGG	3 cut(s)	91, 122, 271
AflII	CTTAAG	1 cut(s)	622
AgsI	TTSAA	6 cut(s)	91, 225, 244, 768, 781, 838
AhlI	ACTAGT	1 cut(s)	711
AjnI	CCWGG	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	6 cut(s)	54, 376, 621, 733, 896, 987
AluI	AGCT	6 cut(s)	54, 376, 621, 733, 896, 987
Alw21I	GWGCWC	4 cut(s)	114, 582, 634, 735
Alw44I	GTGCAC	2 cut(s)	578, 630
AlwI	GGATC	4 cut(s)	53, 659, 672, 750
AlwNI	CAGNNNCTG	1 cut(s)	855
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	183, 392
ApaLI	GTGCAC	2 cut(s)	578, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	355, 392
AsuC2I	CCSGG	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	3 cut(s)	555, 582, 634
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	4 cut(s)	114, 582, 634, 735
BccI	CCATC	2 cut(s)	596, 700
BceAI	ACGGC	2 cut(s)	693, 1070
BcgI	CGANNNNNNTGC	2 cut(s)	903, 937
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	391
BcuI	ACTAGT	1 cut(s)	711
BfaI	CTAG	3 cut(s)	157, 712, 970
BfrI	CTTAAG	1 cut(s)	622
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	3 cut(s)	340, 395, 672
BlpI	GCTNAGC	3 cut(s)	55, 734, 957
BlsI	GCNGC	3 cut(s)	341, 396, 673
Bme1390I	CCNGG	2 cut(s)	194, 391
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	355, 392
BmiI	GGNNCC	4 cut(s)	276, 357, 554, 666
BmrFI	CCNGG	2 cut(s)	194, 391
BmsI	GCATC	3 cut(s)	126, 842, 953
BpiI	GAAGAC	1 cut(s)	942
Bpu1102I	GCTNAGC	3 cut(s)	55, 734, 957
BpuEI	CTTGAG	2 cut(s)	229, 781
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 122, 271
Bse1I	ACTGG	2 cut(s)	423, 931
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	1047
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	3 cut(s)	91, 122, 271
BseMII	CTCAG	7 cut(s)	69, 76, 292, 310, 338, 748, 971
BseNI	ACTGG	2 cut(s)	423, 931
BseRI	GAGGAG	1 cut(s)	631
BseSI	GKGCMC	3 cut(s)	555, 582, 634
BseYI	CCCAGC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	185, 394
BshNI	GGYRCC	1 cut(s)	552
BsiHKAI	GWGCWC	4 cut(s)	114, 582, 634, 735
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	390, 668
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	91, 122, 271
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	185, 394
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	5 cut(s)	114, 555, 582, 634, 735
Bsp143I	GATC	5 cut(s)	45, 315, 664, 742, 907
Bsp1720I	GCTNAGC	3 cut(s)	55, 734, 957
BspACI	CCGC	5 cut(s)	340, 395, 560, 671, 942
BspANI	GGCC	2 cut(s)	185, 394
BspCNI	CTCAG	7 cut(s)	68, 75, 293, 311, 339, 747, 970
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	4 cut(s)	276, 357, 554, 666
BspPI	GGATC	4 cut(s)	53, 659, 672, 750
BspT107I	GGYRCC	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	423, 931
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	5 cut(s)	45, 315, 664, 742, 907
BssSI	CACGAG	1 cut(s)	791
Bst2BI	CACGAG	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	101, 251, 587
BstAFI	CTTAAG	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	1063
BstC8I	GCNNGC	2 cut(s)	344, 989
BstDEI	CTNAG	9 cut(s)	55, 62, 301, 319, 347, 468, 734, 886, 957
BstF5I	GGATG	1 cut(s)	1047
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	5 cut(s)	48, 318, 667, 745, 910
BstMBI	GATC	5 cut(s)	45, 315, 664, 742, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	517, 550, 677, 1063
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	192, 389
BstSLI	GKGCMC	3 cut(s)	555, 582, 634
BstUI	CGCG	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	2 cut(s)	664, 907
BstYI	RGATCY	2 cut(s)	664, 907
BsuRI	GGCC	2 cut(s)	185, 394
BtsCI	GGATG	1 cut(s)	1047
BtsIMutI	CAGTG	3 cut(s)	79, 97, 416
Cac8I	GCNNGC	2 cut(s)	344, 989
CaiI	CAGNNNCTG	1 cut(s)	855
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	355, 392
Csp6I	GTAC	2 cut(s)	102, 449
CviAII	CATG	2 cut(s)	696, 982
CviQI	GTAC	2 cut(s)	102, 449
DdeI	CTNAG	9 cut(s)	55, 62, 301, 319, 347, 468, 734, 886, 957
DpnI	GATC	5 cut(s)	47, 317, 666, 744, 909
DpnII	GATC	5 cut(s)	45, 315, 664, 742, 907
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	733
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	2 cut(s)	699, 985
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	2 cut(s)	695, 981
Fnu4HI	GCNGC	3 cut(s)	340, 395, 672
FokI	GGATG	1 cut(s)	1054
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	3 cut(s)	340, 395, 672
FspBI	CTAG	3 cut(s)	157, 712, 970
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	3 cut(s)	340, 395, 672
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	185, 394
HapII	CCGG	2 cut(s)	390, 668
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	699, 985
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	3 cut(s)	297, 476, 938
HpaII	CCGG	2 cut(s)	390, 668
Hpy166II	GTNNAC	4 cut(s)	580, 632, 687, 861
Hpy188I	TCNGA	8 cut(s)	50, 65, 135, 294, 302, 320, 481, 648
Hpy188III	TCNNGA	5 cut(s)	208, 760, 768, 791, 922
Hpy8I	GTNNAC	4 cut(s)	580, 632, 687, 861
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	101, 251, 587
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	8 cut(s)	79, 139, 511, 580, 632, 750, 991, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	517, 550, 677, 1063
HpyF3I	CTNAG	9 cut(s)	55, 62, 301, 319, 347, 468, 734, 886, 957
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	699, 985
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	45, 315, 664, 742, 907
LmnI	GCTCC	3 cut(s)	381, 595, 618
LweI	GCATC	3 cut(s)	126, 842, 953
MaeI	CTAG	3 cut(s)	157, 712, 970
MaeII	ACGT	1 cut(s)	507
MalI	GATC	5 cut(s)	47, 317, 666, 744, 909
MboI	GATC	5 cut(s)	45, 315, 664, 742, 907
MboII	GAAGA	3 cut(s)	213, 232, 947
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	2 cut(s)	664, 907
MhlI	GDGCHC	5 cut(s)	114, 555, 582, 634, 735
MluCI	AATT	4 cut(s)	440, 639, 776, 781
MlyI	GAGTC	2 cut(s)	485, 932
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	36, 71, 196, 296, 609, 958, 1007
MroXI	GAANNNNTTC	1 cut(s)	217
MseI	TTAA	6 cut(s)	284, 529, 589, 623, 1019, 1051
MspA1I	CMGCKG	1 cut(s)	560
MspCI	CTTAAG	1 cut(s)	622
MspI	CCGG	2 cut(s)	390, 668
MspR9I	CCNGG	2 cut(s)	194, 391
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	914
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	517, 550, 677, 1063
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	45, 315, 664, 742, 907
NlaIII	CATG	2 cut(s)	699, 985
NlaIV	GGNNCC	4 cut(s)	276, 357, 554, 666
NspI	RCATGY	1 cut(s)	699
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	341, 396, 673
PleI	GAGTC	2 cut(s)	484, 932
PpsI	GAGTC	2 cut(s)	484, 932
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	276, 357, 554, 666
PspPI	GGNCC	2 cut(s)	355, 392
PstNI	CAGNNNCTG	1 cut(s)	855
PsuI	RGATCY	2 cut(s)	664, 907
RsaI	GTAC	2 cut(s)	103, 450
RsaNI	GTAC	2 cut(s)	102, 449
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	6 cut(s)	284, 529, 589, 623, 1019, 1051
SatI	GCNGC	3 cut(s)	340, 395, 672
Sau3AI	GATC	5 cut(s)	45, 315, 664, 742, 907
Sau96I	GGNCC	2 cut(s)	355, 392
SchI	GAGTC	2 cut(s)	485, 932
ScrFI	CCNGG	2 cut(s)	194, 391
SduI	GDGCHC	5 cut(s)	114, 555, 582, 634, 735
SfaNI	GCATC	3 cut(s)	126, 842, 953
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	3 cut(s)	208, 622, 760
SmoI	CTYRAG	3 cut(s)	208, 622, 760
SpeI	ACTAGT	1 cut(s)	711
Sse9I	AATT	4 cut(s)	440, 639, 776, 781
SsiI	CCGC	5 cut(s)	340, 395, 560, 671, 942
SspI	AATATT	1 cut(s)	1032
SspMI	CTAG	3 cut(s)	157, 712, 970
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	2 cut(s)	192, 389
TaaI	ACNGT	3 cut(s)	101, 251, 587
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	175, 923
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	4 cut(s)	440, 639, 776, 781
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	3 cut(s)	342, 397, 674
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	6 cut(s)	284, 529, 589, 623, 1019, 1051
Tru9I	TTAA	6 cut(s)	284, 529, 589, 623, 1019, 1051
TscAI	CASTG	3 cut(s)	79, 104, 423
TspDTI	ATGAA	3 cut(s)	787, 907, 1058
TspGWI	ACGGA	2 cut(s)	74, 254
TspRI	CASTG	3 cut(s)	79, 104, 423
Vha464I	CTTAAG	1 cut(s)	622
VneI	GTGCAC	2 cut(s)	578, 630
VpaK11BI	GGWCC	1 cut(s)	355
XceI	RCATGY	1 cut(s)	699
XcmI	CCANNNNNNNNNTGG	2 cut(s)	545, 1035
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	3 cut(s)	157, 712, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.