Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003096

Physical Location & Seq

Genomic Coordinates Reverse (-)

2792636 .. 2797358

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0035000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGCGAGTCGAGTGACTCAGTTTCTATTGACATTGATGTGATACCTTTAGGAGGGAAGGAATGTGTGGTGAAAACAAGCAGAGGTTCAGTGTCTGTGTTTGTCTGTGGGGATCAAGGAAAGCCTGCTTTGATAACATACCCAGATGTTGCTCTTAATTACACGTCTTGCTTCCAAGGCCTCTTCTTTTGCTCAGATGCAGCTTCTTTGCTACTTCATAACTTTTGCATTTACCATATCGATGCGCCAGGACATGAGTTGGGAGCTGATGTGATATCTTCAGATGTTCCTCTTCTTAGTGTGGATGACCTCGCAGACCAGCTAGTTGAAGTGCTTGATTTCTTTGGGTTGAAAGAGGTCCTGTGCTTGGGTGTGACAGCTGGTGCTTATATCCTTACACTGTTTGCAATGAAATATAAAGAACGGGTGCTTGGGTTAATTCTTGTATCTCCTATCTGCAAAGTGCCTTCTTGGACTGAATGGCTCTACAACAAGGTATTGCTGAACTTGTTATACTTTTATGGTATGTGTGGTGTATTAAAGGAATGCCTTCTCCAGCGTTACTTCAGTAAGGAGCTTAGGTGTGGTATACAAGGTGCAGAATCAGATGTAATACAAGCTTGCCGAAGGTTATTGGATGAAAGACAAAGTTTGAACGTGATGCGATTTCTTCAAGCAATAAATGAGAGGCATGACCTTACAGAGAGCTTGAAGAGTTTGCAGTGCAAGACTCTTATTTTTGTGGGTGAAAATAGTCCATTCCATGCTGAATCTGTGTATATGAATGCGAGAATGGACGGAAAAAGTTGTGCTCTGGTTGAGGTTCAGTCATGTGGCTCGCTGGTAACAGAAGAGCACCCAAATGCCATGATTATTCCAATCGAGTTTTTCCTCATGGGATTTGGCTACTACAGGCAACCACATTTTGCGTCCTCGTCAAGTAATGACTCGAACCCTACAAGCCCCTCGAGCTGTTTATCCATAGCACCAGAACTCTTTTCTCCTGAGGGTCTGGGTATCAAGCTCAAACCCATCAAAACAAGGGTAAATACTAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

38.92

Weight (kDa)

5.23

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	23 - 305	6.2e-106	Ndr family
Hydrolase_4	PF12146	67 - 251	2.2e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	68 - 289	1.4e-07	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	68 - 182	1.4e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79620 AT1G79620 AT1G79620 AT1G79620 AT1G79620
fragaria_vesca	FvH4_6g09020 FvH4_6g09020
malus_domestica	MD04G1181800.v1.1 MD04G1182200.v1.1 MD04G1183000.v1.1 MD04G1183100.v1.1 MD12G1196600.v1.1
prunus_persica	Prupe.6G301100_v2.0.a1 Prupe.6G301100_v2.0.a1 Prupe.6G301200_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1
pyrus_communis	pycom04g16070 pycom04g16150 pycom04g16170 pycom12g18280
rosa_chinensis	RchiOBHm_Chr3g0459271
rosa_laevigata	RLG00000025098
rosa_multiflora	Rmu_sc0006220.1_g000001 Rmu_sc0010702.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420350
rosa_rugosa	Rorug03G0034900 Rorug03G0035000
rosa_samantha	Rh3AG092700 Rh3BG095800 Rh3CG096800 Rh3DG096400
rosa_wichuraiana	Rw3G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	589
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	264, 550
AfiI	CCNNNNNNNGG	2 cut(s)	53, 367
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	329, 352, 655, 674, 712
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw21I	GWGCWC	2 cut(s)	814, 858
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	967
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	82, 758
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	1005
Bbv12I	GWGCWC	2 cut(s)	814, 858
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	1040
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	910
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	967
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	187, 232, 651
BpmI	CTGGAG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 367
Bse21I	CCTNAGG	1 cut(s)	1005
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	310, 643
BseLI	CCNNNNNNNGG	2 cut(s)	53, 367
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	33, 207, 996
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	814, 858
BsiHKCI	CYCGRG	1 cut(s)	967
BslI	CCNNNNNNNGG	2 cut(s)	53, 367
BsmI	GAATGC	2 cut(s)	551, 790
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	814, 858
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	32, 206, 997
BspDI	ATCGAT	1 cut(s)	240
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	112
BssNAI	GTATAC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	4 cut(s)	188, 297, 707, 846
BstC8I	GCNNGC	3 cut(s)	126, 622, 839
BstDEI	CTNAG	6 cut(s)	19, 193, 296, 578, 1005, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	310, 643
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 969
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	1 cut(s)	212
BstZ17I	GTATAC	1 cut(s)	590
Bsu15I	ATCGAT	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	1005
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	310, 643
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	3 cut(s)	96, 398, 728
Cac8I	GCNNGC	3 cut(s)	126, 622, 839
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	918
CviAII	CATG	6 cut(s)	254, 692, 764, 831, 868, 895
DdeI	CTNAG	6 cut(s)	19, 193, 296, 578, 1005, 1053
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	4 cut(s)	188, 297, 707, 846
EarI	CTCTTC	4 cut(s)	188, 297, 707, 846
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	264, 550
Eco81I	CCTNAGG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	6 cut(s)	257, 695, 767, 834, 871, 898
FatI	CATG	6 cut(s)	253, 691, 763, 830, 867, 894
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	317, 650
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	6 cut(s)	257, 695, 767, 834, 871, 898
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	6 cut(s)	8, 17, 602, 730, 770, 947
HphI	GGTGA	2 cut(s)	82, 758
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	196, 283, 607
Hpy188III	TCNNGA	1 cut(s)	1004
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	4 cut(s)	52, 477, 560, 621
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	2 cut(s)	164, 657
HpyCH4V	TGCA	7 cut(s)	200, 228, 407, 459, 599, 721, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 969
HpyF3I	CTNAG	6 cut(s)	19, 193, 296, 578, 1005, 1053
HpySE526I	ACGT	2 cut(s)	164, 657
Hsp92II	CATG	6 cut(s)	257, 695, 767, 834, 871, 898
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	263, 574
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	3 cut(s)	187, 232, 651
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	164, 657
MaeIII	GTNAC	4 cut(s)	14, 373, 560, 844
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	175, 270, 284, 662, 724, 863
MhlI	GDGCHC	2 cut(s)	814, 858
MluCI	AATT	2 cut(s)	157, 438
MlyI	GAGTC	4 cut(s)	11, 17, 724, 941
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	3 cut(s)	156, 437, 539
MslI	CAYNNNNRTG	3 cut(s)	38, 240, 861
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	2 cut(s)	551, 790
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	177, 969
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	6 cut(s)	257, 695, 767, 834, 871, 898
NmuCI	GTSAC	2 cut(s)	14, 373
PaeR7I	CTCGAG	1 cut(s)	967
PceI	AGGCCT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	846
PctI	GAATGC	2 cut(s)	551, 790
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	602, 770
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	4 cut(s)	11, 16, 724, 941
PpsI	GAGTC	4 cut(s)	11, 16, 724, 941
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	967
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	380
RseI	CAYNNNNRTG	3 cut(s)	38, 240, 861
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	3 cut(s)	156, 437, 539
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	4 cut(s)	11, 17, 724, 941
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	2 cut(s)	814, 858
SfaNI	GCATC	3 cut(s)	187, 232, 651
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	967
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	967
SmiMI	CAYNNNNRTG	3 cut(s)	38, 240, 861
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
Sse9I	AATT	2 cut(s)	157, 438
SseBI	AGGCCT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	2 cut(s)	167, 660
TaqI	TCGA	5 cut(s)	11, 240, 882, 950, 968
TasI	AATT	2 cut(s)	157, 438
TfiI	GAWTC	2 cut(s)	602, 770
Tru1I	TTAA	3 cut(s)	156, 437, 539
Tru9I	TTAA	3 cut(s)	156, 437, 539
TscAI	CASTG	3 cut(s)	96, 405, 728
TseFI	GTSAC	2 cut(s)	14, 373
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	14, 373
TspDTI	ATGAA	4 cut(s)	206, 425, 654, 797
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	3 cut(s)	96, 405, 728
VpaK11BI	GGWCC	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	967
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.