Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010702.1

Orthogroup ID

OG0003096

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2603

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1010 bp

atggcaaccgtgaggttgctgctgtttctggctttgtgctctgggattcaagtggtgttctccgatgacgcagctgctgggcttcaatccttcaaggccgtgtggcgaaattatccacccagctgggaccggtcaagtgattactgtgggtgggaaggaatcacctgcaatcaggaatccagtgtgactgcaatgagattatcaggcatgggcctggtaggggatcttagtggcgacattggggcatttactgaattaacatccttggacctttcattcaaccctggacttactggtcctctctctccacaattagggcagctgcaaaagttaaatattctgatcctagctggctgcaaattcactggcagtattccagatgaattgggaaatcttggagagctaaccttcttggctctgaatacaaacaatttgaccggtaaaatacctgcttctttgggtaaactctccaaactctactggctggaccttgcagaaaatcagttgactggacctatcccagtttcatctgcgacatccccaggcttggaccaactagtgaaagctaaacatttccatttcaacaagaaccagctttcaggttcaattccagccacactattcagcgctgagatggtcctgatacatgtgttgtttgatggaaacaaattaagtgggactattccatcaacaataggacaagttcagactcttgaggctcttcggcttgatagaaatgctctgacgggaccagtcccaaaaagtattaacaaccttacaaatgtcaatgaattaaatttggcccttaacaatttgacaggccctctgcccgacttgactggaatgaactccctcaattatttagaccttagtaacaactcatttgatccatcagaagcaccaagttggttctcagctttacccgtactcacaactctggttgtagaatatggaccacttcaaggtactgtgccagagaagcttttcagcctacaagatctacagcaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

36.06

Weight (kDa)

4.71

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79620 AT1G79620 AT1G79620 AT1G79620 AT1G79620
fragaria_vesca	FvH4_6g09020 FvH4_6g09020
malus_domestica	MD04G1181800.v1.1 MD04G1182200.v1.1 MD04G1183000.v1.1 MD04G1183100.v1.1 MD12G1196600.v1.1
prunus_persica	Prupe.6G301100_v2.0.a1 Prupe.6G301100_v2.0.a1 Prupe.6G301200_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1
pyrus_communis	pycom04g16070 pycom04g16150 pycom04g16170 pycom12g18280
rosa_chinensis	RchiOBHm_Chr3g0459271
rosa_laevigata	RLG00000025098
rosa_multiflora	Rmu_sc0006220.1_g000001 Rmu_sc0010702.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420350
rosa_rugosa	Rorug03G0034900 Rorug03G0035000
rosa_samantha	Rh3AG092700 Rh3BG095800 Rh3CG096800 Rh3DG096400
rosa_wichuraiana	Rw3G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc36I	ACCTGC	2 cut(s)	173, 457
AclWI	GGATC	3 cut(s)	231, 337, 881
AcsI	RAATTY	2 cut(s)	359, 796
AfaI	GTAC	2 cut(s)	927, 967
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	220, 314, 547, 962
AflIII	ACRYGT	1 cut(s)	646
AgeI	ACCGGT	2 cut(s)	129, 437
AgsI	TTSAA	7 cut(s)	50, 86, 94, 280, 583, 606, 962
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	3 cut(s)	213, 283, 541
AluBI	AGCT	9 cut(s)	74, 123, 322, 350, 403, 566, 595, 917, 982
AluI	AGCT	9 cut(s)	74, 123, 322, 350, 403, 566, 595, 917, 982
Alw21I	GWGCWC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	231, 337, 881
AlwNI	CAGNNNCTG	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	4 cut(s)	96, 211, 801, 820
ApeKI	GCWGC	6 cut(s)	19, 71, 74, 319, 322, 354
ApoI	RAATTY	2 cut(s)	359, 796
AsiGI	ACCGGT	2 cut(s)	129, 437
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	9 cut(s)	127, 268, 296, 487, 512, 550, 637, 749, 953
BaeI	ACNNNNGTAYC	2 cut(s)	635, 668
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	6 cut(s)	6, 61, 83, 309, 331, 341
BccI	CCATC	4 cut(s)	628, 653, 694, 898
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	215, 285, 543
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	2 cut(s)	347, 557
BfmI	CTRYAG	1 cut(s)	1001
BfoI	RGCGCY	1 cut(s)	630
BfuAI	ACCTGC	2 cut(s)	173, 457
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	6 cut(s)	20, 72, 75, 320, 323, 355
BlsI	GCNGC	6 cut(s)	21, 73, 76, 321, 324, 356
Bme1390I	CCNGG	3 cut(s)	215, 285, 543
Bme18I	GGWCC	9 cut(s)	127, 268, 296, 487, 512, 550, 637, 749, 953
BmiI	GGNNCC	2 cut(s)	128, 750
BmrFI	CCNGG	3 cut(s)	215, 285, 543
BmrI	ACTGGG	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	264, 283, 541
BsaWI	WCCGGW	2 cut(s)	129, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 314, 547, 962
Bse118I	RCCGGY	2 cut(s)	129, 437
Bse1I	ACTGG	8 cut(s)	180, 298, 370, 485, 514, 521, 752, 844
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	215, 285, 543
BseDI	CCNNGG	3 cut(s)	264, 283, 541
BseGI	GGATG	2 cut(s)	260, 536
BseLI	CCNNNNNNNGG	4 cut(s)	220, 314, 547, 962
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	621, 927
BseNI	ACTGG	8 cut(s)	180, 298, 370, 485, 514, 521, 752, 844
BseXI	GCAGC	6 cut(s)	6, 61, 83, 309, 331, 341
BseYI	CCCAGC	3 cut(s)	77, 119, 123
BshFI	GGCC	4 cut(s)	98, 213, 803, 822
BshTI	ACCGGT	2 cut(s)	129, 437
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	130, 438
BslFI	GGGAC	4 cut(s)	140, 691, 740, 762
BslI	CCNNNNNNNGG	4 cut(s)	220, 314, 547, 962
BsmFI	GGGAC	4 cut(s)	140, 691, 740, 762
BsnI	GGCC	4 cut(s)	98, 213, 803, 822
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	223, 342, 886, 997
BspANI	GGCC	4 cut(s)	98, 213, 803, 822
BspCNI	CTCAG	2 cut(s)	622, 926
BspLI	GGNNCC	2 cut(s)	128, 750
BspMI	ACCTGC	2 cut(s)	173, 457
BspPI	GGATC	3 cut(s)	231, 337, 881
BspQI	GCTCTTC	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	129, 437
BsrI	ACTGG	8 cut(s)	180, 298, 370, 485, 514, 521, 752, 844
BssAI	RCCGGY	2 cut(s)	129, 437
BssECI	CCNNGG	3 cut(s)	264, 283, 541
BssMI	GATC	4 cut(s)	223, 342, 886, 997
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	3 cut(s)	215, 285, 543
Bst4CI	ACNGT	3 cut(s)	10, 146, 970
Bst6I	CTCTTC	1 cut(s)	726
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	4 cut(s)	227, 630, 869, 913
BstF5I	GGATG	2 cut(s)	260, 536
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	4 cut(s)	226, 345, 889, 1000
BstMBI	GATC	4 cut(s)	223, 342, 886, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	979
BstNI	CCWGG	3 cut(s)	215, 285, 543
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	213, 283, 541
BstSFI	CTRYAG	1 cut(s)	1001
BstV1I	GCAGC	6 cut(s)	6, 61, 83, 309, 331, 341
BstX2I	RGATCY	2 cut(s)	223, 997
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	2 cut(s)	223, 997
BsuRI	GGCC	4 cut(s)	98, 213, 803, 822
BtsCI	GGATG	2 cut(s)	260, 536
BtsIMutI	CAGTG	2 cut(s)	187, 363
BveI	ACCTGC	2 cut(s)	173, 457
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	629
Cfr10I	RCCGGY	2 cut(s)	129, 437
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	926, 966
CspAI	ACCGGT	2 cut(s)	129, 437
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	2 cut(s)	208, 647
CviQI	GTAC	2 cut(s)	926, 966
DdeI	CTNAG	4 cut(s)	227, 630, 869, 913
DpnI	GATC	4 cut(s)	225, 344, 888, 999
DpnII	GATC	4 cut(s)	223, 342, 886, 997
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	9 cut(s)	127, 268, 296, 487, 512, 550, 637, 749, 953
Eco47III	AGCGCT	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	3 cut(s)	213, 283, 541
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	211, 650
FaiI	YATR	3 cut(s)	209, 648, 951
FaqI	GGGAC	4 cut(s)	140, 691, 740, 762
FatI	CATG	2 cut(s)	207, 646
Fnu4HI	GCNGC	6 cut(s)	20, 72, 75, 320, 323, 355
FokI	GGATG	2 cut(s)	247, 523
Fsp4HI	GCNGC	6 cut(s)	20, 72, 75, 320, 323, 355
FspBI	CTAG	2 cut(s)	347, 557
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	6 cut(s)	20, 72, 75, 320, 323, 355
GsaI	CCCAGC	3 cut(s)	81, 123, 127
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	98, 213, 803, 822
HapII	CCGG	2 cut(s)	130, 438
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	211, 650
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	4 cut(s)	46, 159, 176, 709
HpaII	CCGG	2 cut(s)	130, 438
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	464, 507
Hpy188I	TCNGA	6 cut(s)	64, 342, 420, 708, 744, 895
Hpy188III	TCNNGA	4 cut(s)	173, 377, 640, 713
Hpy8I	GTNNAC	2 cut(s)	464, 507
HpyAV	CCTTC	3 cut(s)	100, 149, 418
HpyCH4III	ACNGT	3 cut(s)	10, 146, 970
HpyCH4V	TGCA	5 cut(s)	168, 191, 325, 357, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	979
HpyF3I	CTNAG	4 cut(s)	227, 630, 869, 913
Hsp92II	CATG	2 cut(s)	211, 650
HspAI	GCGC	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	223, 342, 886, 997
LguI	GCTCTTC	1 cut(s)	726
Lsp1109I	GCAGC	6 cut(s)	6, 61, 83, 309, 331, 341
MaeI	CTAG	2 cut(s)	347, 557
MaeIII	GTNAC	2 cut(s)	184, 872
MalI	GATC	4 cut(s)	225, 344, 888, 999
MboI	GATC	4 cut(s)	223, 342, 886, 997
MboII	GAAGA	1 cut(s)	713
MflI	RGATCY	2 cut(s)	223, 997
MhlI	GDGCHC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	703
MnlI	CCTC	5 cut(s)	6, 309, 709, 834, 863
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	6 cut(s)	257, 332, 671, 768, 794, 807
MspA1I	CMGCKG	3 cut(s)	74, 123, 322
MspI	CCGG	2 cut(s)	130, 438
MspR9I	CCNGG	3 cut(s)	215, 285, 543
MvaI	CCWGG	3 cut(s)	215, 285, 543
MwoI	GCNNNNNNNGC	1 cut(s)	979
NdeII	GATC	4 cut(s)	223, 342, 886, 997
NlaIII	CATG	2 cut(s)	211, 650
NlaIV	GGNNCC	2 cut(s)	128, 750
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	173
PciI	ACATGT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	3 cut(s)	46, 159, 176
PinAI	ACCGGT	2 cut(s)	129, 437
PkrI	GCNGC	6 cut(s)	21, 73, 76, 321, 324, 356
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PscI	ACATGT	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	213, 283, 541
PspFI	CCCAGC	3 cut(s)	77, 119, 123
PspGI	CCWGG	3 cut(s)	213, 283, 541
PspN4I	GGNNCC	2 cut(s)	128, 750
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	223, 997
PvuII	CAGCTG	3 cut(s)	74, 123, 322
RsaI	GTAC	2 cut(s)	927, 967
RsaNI	GTAC	2 cut(s)	926, 966
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	6 cut(s)	257, 332, 671, 768, 794, 807
SatI	GCNGC	6 cut(s)	20, 72, 75, 320, 323, 355
Sau3AI	GATC	4 cut(s)	223, 342, 886, 997
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	3 cut(s)	215, 285, 543
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	1001
SinI	GGWCC	9 cut(s)	127, 268, 296, 487, 512, 550, 637, 749, 953
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SpeI	ACTAGT	1 cut(s)	556
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	347, 557
StyD4I	CCNGG	3 cut(s)	213, 283, 541
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	10, 146, 970
TfiI	GAWTC	3 cut(s)	46, 159, 176
Tru1I	TTAA	6 cut(s)	257, 332, 671, 768, 794, 807
Tru9I	TTAA	6 cut(s)	257, 332, 671, 768, 794, 807
TscAI	CASTG	2 cut(s)	187, 370
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	6 cut(s)	19, 71, 74, 319, 322, 354
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	5 cut(s)	264, 396, 516, 804, 860
TspRI	CASTG	2 cut(s)	187, 370
VpaK11BI	GGWCC	9 cut(s)	127, 268, 296, 487, 512, 550, 637, 749, 953
XapI	RAATTY	2 cut(s)	359, 796
XceI	RCATGY	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	2 cut(s)	347, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.