Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003096

Physical Location & Seq

Genomic Coordinates Forward (+)

2789387 .. 2791201

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCTACCCTTTGTAATTATACTATAGTAGTCATCACAATTTTTTTCGTTCATCTCGTATATTTCTCTGTTACAGCAACAACCATTATCAACAATAATAATGGTGGCTTTAGCGCACATCTCATCAGAAGAACTTCCCCAAATTCACCATTATACAGGCACAAAAACAACAAAGTTTTTCGACGGTTGATGGGTGGAGACATGTCGGGATACCCACTACAACTCGATCCGATTAGTAATGGACATATTATGAAGTTATCAATCGGAACCCCGCCCTCAGATATTTATGTACTTTCTGATACAGGCAGCACTCTACTGTGGACGCAATGCAAGTCGTGTAAAACTTGCTACAAGACCAAATATGCCATGTTCGACCCGAGAAAATCCTCAACTTATAGGAACATAACTTGTTCTGAAAGAGAGTGTAAATTTGTCGACGATTACAAACCATCGAGCCAGTCACCAAGCTTTTGTCAAAAACATCCTACAAGATTGTGTACTTACAATATGACGTATGTAGACACGGCATCCAGTCTAGGTGTGTTGGCAAAAGAAACATTTACTTTGACATCCAGGGCAGGTCAGGTTGTAACCCTAGAAGATATTGTCTTTGGGTGTGGGCATTTGAATTATGAACCTGTTTCAACTGGAAATGAAATGGGAGTGATTGGGCTTGGACGTGGGCCTATGTCATTTGTTTCTCAGATTGCTCCCCATGTTGGAGGGAACAAATTTTCTTATTGCTTGGTGCCTATGCGTACTGATCCCAAATTTGAAAGCAAGATCAATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTTGTCTCAACACCATTGCTTGATGTTGATGACAGTTCTAACTATATAGTGGCGGTAGAGGGAATTAGCATTGGAAATGAATTTGTTCCGTTCAACTCAACAGTGAAACCGCTCAAAAAATTTAAGATGGTTGTCGACTCGGGCTCAAGTATTGGACATCTACCTCGAGATATTTGGGACCGGGTGATAACTCAGCTAAATAAGACGCTTGATCCAGAATTGAAGCCGTCCATTGTATACAATGCCACGGCAGACAAAACACATTATTTATGCTTTAACTCGATGACAATTCCAGAAGAACCAAAAGTGGCATTTCATTTCATGGGTGGTGGCAAACTGGAGTTAATGGCAGAACAAATATTCATCAAATCTCCACAGGAGGAGAACACAGTCTACTTTGGAATCGGCTCTATGGATGTTTATTCTGGCGTGGATTCTGGTCTTTTTGGTGCCAATCTGCAGGGAAATTTGTTGATTGGTTATGACCTCGATAGAAATGTGGCATCCTTCAAGCCAACTAATTGCCTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

451

Amino Acids

49.77

Weight (kDa)

7.52

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	83 - 266	6.7e-48	Xylanase inhibitor N-terminal
Asp	PF00026	84 - 134	2.8e-08	Eukaryotic aspartyl protease
Asp	PF00026	136 - 444	4.9e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	288 - 445	6.1e-14	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79620 AT1G79620 AT1G79620 AT1G79620 AT1G79620
fragaria_vesca	FvH4_6g09020 FvH4_6g09020
malus_domestica	MD04G1181800.v1.1 MD04G1182200.v1.1 MD04G1183000.v1.1 MD04G1183100.v1.1 MD12G1196600.v1.1
prunus_persica	Prupe.6G301100_v2.0.a1 Prupe.6G301100_v2.0.a1 Prupe.6G301200_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301500_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1 Prupe.6G301600_v2.0.a1
pyrus_communis	pycom04g16070 pycom04g16150 pycom04g16170 pycom12g18280
rosa_chinensis	RchiOBHm_Chr3g0459271
rosa_laevigata	RLG00000025098
rosa_multiflora	Rmu_sc0006220.1_g000001 Rmu_sc0010702.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420350
rosa_rugosa	Rorug03G0034900 Rorug03G0035000
rosa_samantha	Rh3AG092700 Rh3BG095800 Rh3CG096800 Rh3DG096400
rosa_wichuraiana	Rw3G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	569
AccB1I	GGYRCC	2 cut(s)	748, 1271
AccBSI	CCGCTC	1 cut(s)	934
AccI	GTMKAC	5 cut(s)	435, 519, 957, 1059, 1215
AciI	CCGC	3 cut(s)	272, 875, 932
AclWI	GGATC	3 cut(s)	221, 758, 1028
AcsI	RAATTY	7 cut(s)	142, 428, 731, 770, 902, 941, 1288
AfaI	GTAC	3 cut(s)	291, 499, 760
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	6 cut(s)	628, 645, 776, 916, 1045, 1333
AjiI	CACGTC	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	2 cut(s)	468, 1018
AluI	AGCT	2 cut(s)	468, 1018
Alw26I	GTCTC	2 cut(s)	192, 832
AlwI	GGATC	3 cut(s)	221, 758, 1028
Ama87I	CYCGRG	3 cut(s)	376, 961, 987
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	7 cut(s)	142, 428, 731, 770, 902, 941, 1288
Asp700I	GAANNNNTTC	2 cut(s)	133, 906
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	683, 1000
AsuC2I	CCSGG	1 cut(s)	1004
AsuHPI	GGTGA	4 cut(s)	138, 453, 827, 1018
AvaI	CYCGRG	3 cut(s)	376, 961, 987
AvaII	GGWCC	1 cut(s)	1000
BanI	GGYRCC	2 cut(s)	748, 1271
BanII	GRGCYC	1 cut(s)	968
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	3 cut(s)	184, 457, 943
BceAI	ACGGC	3 cut(s)	540, 1033, 1086
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	2 cut(s)	192, 832
BfaI	CTAG	2 cut(s)	536, 596
BfmI	CTRYAG	2 cut(s)	24, 1280
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	574, 1004
Bme18I	GGWCC	1 cut(s)	1000
BmeT110I	CYCGRG	3 cut(s)	376, 961, 987
BmgBI	CACGTC	1 cut(s)	680
BmgT120I	GGNCC	2 cut(s)	683, 1000
BmiI	GGNNCC	4 cut(s)	268, 750, 1001, 1273
BmrFI	CCNGG	2 cut(s)	574, 1004
BmsI	GCATC	2 cut(s)	536, 1334
BpmI	CTGGAG	1 cut(s)	1181
BpuEI	CTTGAG	1 cut(s)	952
BpuMI	CCSGG	1 cut(s)	1004
BsaJI	CCNNGG	2 cut(s)	573, 1068
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	4 cut(s)	457, 531, 652, 1164
Bse3DI	GCAATG	2 cut(s)	332, 836
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	573, 1068
BseGI	GGATG	5 cut(s)	481, 527, 569, 1243, 1325
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	2 cut(s)	332, 836
BseMII	CTCAG	3 cut(s)	291, 716, 1028
BseNI	ACTGG	4 cut(s)	457, 531, 652, 1164
BseRI	GAGGAG	1 cut(s)	1217
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	1 cut(s)	685
BshNI	GGYRCC	2 cut(s)	748, 1271
BsiHKCI	CYCGRG	3 cut(s)	376, 961, 987
BsiSI	CCGG	1 cut(s)	1003
BslFI	GGGAC	1 cut(s)	1013
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	192, 832
BsmFI	GGGAC	1 cut(s)	1013
BsnI	GGCC	1 cut(s)	685
BsoBI	CYCGRG	3 cut(s)	376, 961, 987
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp143I	GATC	4 cut(s)	226, 763, 783, 1033
BspACI	CCGC	3 cut(s)	272, 875, 932
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	3 cut(s)	290, 715, 1027
BspLI	GGNNCC	4 cut(s)	268, 750, 1001, 1273
BspMAI	CTGCAG	1 cut(s)	1284
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	3 cut(s)	221, 758, 1028
BspT107I	GGYRCC	2 cut(s)	748, 1271
BsrBI	CCGCTC	1 cut(s)	934
BsrDI	GCAATG	2 cut(s)	332, 836
BsrI	ACTGG	4 cut(s)	457, 531, 652, 1164
BssECI	CCNNGG	2 cut(s)	573, 1068
BssMI	GATC	4 cut(s)	226, 763, 783, 1033
BssNAI	GTATAC	1 cut(s)	1060
Bst1107I	GTATAC	1 cut(s)	1060
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	5 cut(s)	186, 318, 857, 925, 1213
BstDEI	CTNAG	3 cut(s)	277, 702, 1014
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	5 cut(s)	481, 527, 569, 1243, 1325
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	229, 766, 786, 1036
BstMAI	GTCTC	2 cut(s)	192, 832
BstMBI	GATC	4 cut(s)	226, 763, 783, 1033
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	572, 1002
BstSFI	CTRYAG	2 cut(s)	24, 1280
BstV1I	GCAGC	1 cut(s)	318
BstZ17I	GTATAC	1 cut(s)	1060
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	1068
BtrI	CACGTC	1 cut(s)	680
BtsCI	GGATG	5 cut(s)	481, 527, 569, 1243, 1325
BtsIMutI	CAGTG	1 cut(s)	930
BveI	ACCTGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	683, 1000
CseI	GACGC	2 cut(s)	331, 1036
Csp6I	GTAC	3 cut(s)	290, 498, 759
CviAII	CATG	4 cut(s)	202, 367, 716, 1144
CviQI	GTAC	3 cut(s)	290, 498, 759
DdeI	CTNAG	3 cut(s)	277, 702, 1014
DpnI	GATC	4 cut(s)	228, 765, 785, 1035
DpnII	GATC	4 cut(s)	226, 763, 783, 1033
Eco24I	GRGCYC	1 cut(s)	968
Eco47I	GGWCC	1 cut(s)	1000
Eco88I	CYCGRG	3 cut(s)	376, 961, 987
EcoRII	CCWGG	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	968
FaeI	CATG	4 cut(s)	205, 370, 719, 1147
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	4 cut(s)	201, 366, 715, 1143
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	5 cut(s)	435, 519, 957, 1059, 1215
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	5 cut(s)	468, 514, 556, 1250, 1312
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	2 cut(s)	536, 596
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	1181
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	1 cut(s)	1003
HgaI	GACGC	2 cut(s)	331, 1036
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	205, 370, 719, 1147
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	2 cut(s)	436, 958
HindII	GTYRAC	2 cut(s)	436, 958
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	3 cut(s)	959, 1224, 1256
HpaII	CCGG	1 cut(s)	1003
HphI	GGTGA	4 cut(s)	138, 453, 827, 1018
Hpy166II	GTNNAC	7 cut(s)	321, 436, 498, 520, 958, 1060, 1216
Hpy188I	TCNGA	7 cut(s)	128, 231, 266, 280, 298, 415, 705
Hpy188III	TCNNGA	5 cut(s)	207, 793, 989, 1037, 1115
Hpy8I	GTNNAC	7 cut(s)	321, 436, 498, 520, 958, 1060, 1216
Hpy99I	CGWCG	2 cut(s)	186, 440
HpyAV	CCTTC	2 cut(s)	812, 1339
HpyCH4III	ACNGT	5 cut(s)	186, 318, 857, 925, 1213
HpyCH4IV	ACGT	2 cut(s)	512, 679
HpyCH4V	TGCA	2 cut(s)	330, 1282
HpyF3I	CTNAG	3 cut(s)	277, 702, 1014
HpySE526I	ACGT	2 cut(s)	512, 679
Hsp92II	CATG	4 cut(s)	205, 370, 719, 1147
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	226, 763, 783, 1033
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	536, 1334
MaeI	CTAG	2 cut(s)	536, 596
MaeII	ACGT	2 cut(s)	512, 679
MaeIII	GTNAC	3 cut(s)	70, 459, 589
MalI	GATC	4 cut(s)	228, 765, 785, 1035
MbiI	CCGCTC	1 cut(s)	934
MboI	GATC	4 cut(s)	226, 763, 783, 1033
MboII	GAAGA	3 cut(s)	141, 611, 1130
MhlI	GDGCHC	1 cut(s)	968
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	7 cut(s)	286, 397, 716, 874, 996, 1195, 1319
MroXI	GAANNNNTTC	2 cut(s)	133, 906
MseI	TTAA	3 cut(s)	945, 1098, 1166
MspI	CCGG	1 cut(s)	1003
MspR9I	CCNGG	2 cut(s)	574, 1004
MvaI	CCWGG	1 cut(s)	574
NciI	CCSGG	1 cut(s)	1004
NdeII	GATC	4 cut(s)	226, 763, 783, 1033
NlaIII	CATG	4 cut(s)	205, 370, 719, 1147
NlaIV	GGNNCC	4 cut(s)	268, 750, 1001, 1273
NmuCI	GTSAC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	987
PciI	ACATGT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	133, 906
PfeI	GAWTC	2 cut(s)	1224, 1256
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PscI	ACATGT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	4 cut(s)	268, 750, 1001, 1273
PspPI	GGNCC	2 cut(s)	683, 1000
PsrI	GAACNNNNNNTAC	2 cut(s)	1199, 1231
PstI	CTGCAG	1 cut(s)	1284
RsaI	GTAC	3 cut(s)	291, 499, 760
RsaNI	GTAC	3 cut(s)	290, 498, 759
SalI	GTCGAC	2 cut(s)	434, 956
SaqAI	TTAA	3 cut(s)	945, 1098, 1166
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	4 cut(s)	226, 763, 783, 1033
Sau96I	GGNCC	2 cut(s)	683, 1000
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	2 cut(s)	574, 1004
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	2 cut(s)	536, 1334
SfcI	CTRYAG	2 cut(s)	24, 1280
Sfr274I	CTCGAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	1000
SlaI	CTCGAG	1 cut(s)	987
SmlI	CTYRAG	2 cut(s)	967, 987
SmoI	CTYRAG	2 cut(s)	967, 987
SsiI	CCGC	3 cut(s)	272, 875, 932
SspI	AATATT	1 cut(s)	1182
SspMI	CTAG	2 cut(s)	536, 596
StyD4I	CCNGG	2 cut(s)	572, 1002
TaaI	ACNGT	5 cut(s)	186, 318, 857, 925, 1213
TaiI	ACGT	2 cut(s)	515, 682
TaqI	TCGA	9 cut(s)	181, 225, 372, 435, 452, 957, 988, 1103, 1311
TatI	WGTACW	2 cut(s)	289, 497
TfiI	GAWTC	2 cut(s)	1224, 1256
Tru1I	TTAA	3 cut(s)	945, 1098, 1166
Tru9I	TTAA	3 cut(s)	945, 1098, 1166
TscAI	CASTG	1 cut(s)	930
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	8 cut(s)	41, 266, 648, 669, 915, 1127, 1132, 1174
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	1000
XapI	RAATTY	7 cut(s)	142, 428, 731, 770, 902, 941, 1288
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	987
XmiI	GTMKAC	5 cut(s)	435, 519, 957, 1059, 1215
XmnI	GAANNNNTTC	2 cut(s)	133, 906
XspI	CTAG	2 cut(s)	536, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.