Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006264.1

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Reverse (-)

56633 .. 60899

Gene Structure 4267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgtggttgttgcccacatttgttgtggtgaagctgagctcgtcggcgaactccttggcagcaccagctaagagtggcagggtagaagagggttcggcgttcgggggcttaatatggagaagaggagagaaggttagatggatgttttttctatttctaatcgggttagatgggtttcgtcaggcagtccgtttccgttcgttaactaacggctgctctctctctaaaataccagctgcggatccaccttctctctctctctcccccgctcgcctccacaccaccactagtcgttcaacatcttcctcctcgaaatcaccaccggccaccgtcgccggccggcaccgcccgatcgcgtctgggggaatggagtcctcgtacctgaacttgttcgtggaggagacaagcttctacaaccgcattgtcctcgacagcctgttgcccaactgggtgtgggtctcgctgccccacttcttccagtcgtggctgcgcaactacctcggcggcaccttaatctacctcgtctccggcttcctctggtgcttctacatttactacctcaaacgcaacgtctacctcccgaaagatgccattccctctaataaagccatgcttttgcaaatatatgttgccatgaaggccatgccttggtactgtgctcttccgtctctctcagagtacatggttgaaaatggctgggcaaggtgcttctcaagaataagtgatgtaggttgggttgcttacctcatctacttatcaatttatcttataatcgtggagtttggaatctattggatgcatagggagttgcatgacataaagcctctgtataaatggcttcataatatacatcacatttacaacaagcagaacaccctctctccatttgctggtttggctttccacccacttgatgggatactgcaggcagttccgcatgttatagctctgtttcttgtgccaatgcattttactactcacatagcgctcctatttattgaagccatatggacagcaaatattcacgattgcatccatgccaaaatatggcctgtgatgggtgctggctaccacaccattcatcatacgacctatcgccataattatggccattatactatatggatggactggatgtttggaactcttcgtgaccctatcaatgaggaatcaaaggtcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

394

Amino Acids

45.23

Weight (kDa)

9.29

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	254 - 382	1.6e-20	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
Acc16I	TGCGCA	1 cut(s)	491
AccB1I	GGYRCC	2 cut(s)	342, 506
AccB7I	CCANNNNNTGG	4 cut(s)	648, 890, 914, 1047
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	356
AciI	CCGC	6 cut(s)	239, 267, 346, 418, 504, 935
AclWI	GGATC	2 cut(s)	236, 249
AcoI	YGGCCR	3 cut(s)	324, 337, 1108
AfaI	GTAC	3 cut(s)	380, 653, 680
AfeI	AGCGCT	1 cut(s)	987
AfiI	CCNNNNNNNGG	5 cut(s)	648, 890, 914, 1047, 1058
AgsI	TTSAA	3 cut(s)	297, 689, 1001
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	6 cut(s)	34, 39, 68, 236, 408, 947
AluI	AGCT	6 cut(s)	34, 39, 68, 236, 408, 947
Alw21I	GWGCWC	2 cut(s)	41, 661
Alw26I	GTCTC	4 cut(s)	395, 463, 529, 672
AlwI	GGATC	2 cut(s)	236, 249
Aor51HI	AGCGCT	1 cut(s)	987
AoxI	GGCC	5 cut(s)	324, 337, 639, 1049, 1108
ApeKI	GCWGC	5 cut(s)	59, 213, 236, 463, 487
ArsI	GACNNNNNNTTYG	4 cut(s)	555, 587, 1121, 1153
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	492, 988
AsuHPI	GGTGA	2 cut(s)	40, 309
BalI	TGGCCA	1 cut(s)	1110
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	342, 506
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	41, 661
BbvI	GCAGC	5 cut(s)	71, 200, 223, 450, 474
BccI	CCATC	5 cut(s)	132, 164, 908, 1051, 1120
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	4 cut(s)	409, 443, 481, 515
BciVI	GTATCC	1 cut(s)	912
BcoDI	GTCTC	4 cut(s)	395, 463, 529, 672
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	923
BfoI	RGCGCY	1 cut(s)	989
BfuI	GTATCC	1 cut(s)	912
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	6 cut(s)	60, 214, 237, 464, 488, 505
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	6 cut(s)	61, 215, 238, 465, 489, 506
BmiI	GGNNCC	3 cut(s)	243, 344, 508
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	3 cut(s)	577, 786, 1041
BmuI	ACTGGG	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	54, 499, 647
BsaXI	ACNNNNNCTCC	8 cut(s)	117, 147, 362, 392, 509, 539, 865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	648, 890, 914, 1047, 1058
Bse118I	RCCGGY	3 cut(s)	322, 335, 339
Bse1I	ACTGG	3 cut(s)	452, 478, 1136
BseDI	CCNNGG	3 cut(s)	54, 499, 647
BseGI	GGATG	5 cut(s)	147, 801, 1032, 1131, 1140
BseLI	CCNNNNNNNGG	5 cut(s)	648, 890, 914, 1047, 1058
BseMII	CTCAG	2 cut(s)	26, 687
BseNI	ACTGG	3 cut(s)	452, 478, 1136
BseRI	GAGGAG	3 cut(s)	138, 298, 413
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	5 cut(s)	71, 200, 223, 450, 474
BseYI	CCCAGC	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	2 cut(s)	340, 354
BshFI	GGCC	5 cut(s)	326, 339, 641, 1051, 1110
BshNI	GGYRCC	2 cut(s)	342, 506
BsiEI	CGRYCG	2 cut(s)	340, 354
BsiHKAI	GWGCWC	2 cut(s)	41, 661
BsiSI	CCGG	4 cut(s)	323, 336, 340, 528
BslI	CCNNNNNNNGG	5 cut(s)	648, 890, 914, 1047, 1058
BsmAI	GTCTC	4 cut(s)	395, 463, 529, 672
BsmBI	CGTCTC	2 cut(s)	529, 672
BsnI	GGCC	5 cut(s)	326, 339, 641, 1051, 1110
Bso31I	GGTCTC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	41, 661
Bsp143I	GATC	2 cut(s)	241, 351
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	6 cut(s)	239, 267, 346, 418, 504, 935
BspANI	GGCC	5 cut(s)	326, 339, 641, 1051, 1110
BspCNI	CTCAG	2 cut(s)	27, 686
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	243, 344, 508
BspMAI	CTGCAG	1 cut(s)	927
BspPI	GGATC	2 cut(s)	236, 249
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	2 cut(s)	342, 506
BspTNI	GGTCTC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	3 cut(s)	322, 335, 339
BsrI	ACTGG	3 cut(s)	452, 478, 1136
BssAI	RCCGGY	3 cut(s)	322, 335, 339
BssECI	CCNNGG	3 cut(s)	54, 499, 647
BssMI	GATC	2 cut(s)	241, 351
BssT1I	CCWWGG	2 cut(s)	54, 647
Bst4CI	ACNGT	2 cut(s)	331, 656
Bst6I	CTCTTC	4 cut(s)	81, 115, 666, 1152
BstC8I	GCNNGC	5 cut(s)	271, 337, 341, 927, 1066
BstDEI	CTNAG	3 cut(s)	35, 69, 673
BstF5I	GGATG	5 cut(s)	147, 801, 1032, 1131, 1140
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	2 cut(s)	492, 988
BstKTI	GATC	2 cut(s)	244, 354
BstMAI	GTCTC	4 cut(s)	395, 463, 529, 672
BstMBI	GATC	2 cut(s)	241, 351
BstMCI	CGRYCG	2 cut(s)	340, 354
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 332, 345, 638, 896
BstNSI	RCATGY	1 cut(s)	941
BstSFI	CTRYAG	1 cut(s)	923
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	5 cut(s)	71, 200, 223, 450, 474
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	5 cut(s)	326, 339, 641, 1051, 1110
BtsCI	GGATG	5 cut(s)	147, 801, 1032, 1131, 1140
Cac8I	GCNNGC	5 cut(s)	271, 337, 341, 927, 1066
CfoI	GCGC	2 cut(s)	492, 988
Cfr10I	RCCGGY	3 cut(s)	322, 335, 339
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	379, 652, 679
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	7 cut(s)	610, 634, 643, 682, 812, 938, 1037
CviQI	GTAC	3 cut(s)	379, 652, 679
DdeI	CTNAG	3 cut(s)	35, 69, 673
DpnI	GATC	2 cut(s)	243, 353
DpnII	GATC	2 cut(s)	241, 351
EaeI	YGGCCR	3 cut(s)	324, 337, 1108
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	4 cut(s)	81, 115, 666, 1152
EarI	CTCTTC	4 cut(s)	81, 115, 666, 1152
Ecl136II	GAGCTC	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	54, 647
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	463
Eco47III	AGCGCT	1 cut(s)	987
Eco52I	CGGCCG	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	54, 647
EcoT22I	ATGCAT	2 cut(s)	801, 969
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	54, 647
Esp3I	CGTCTC	2 cut(s)	529, 672
FaeI	CATG	7 cut(s)	613, 637, 646, 685, 815, 941, 1040
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	7 cut(s)	609, 633, 642, 681, 811, 937, 1036
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	1007
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	60, 214, 237, 464, 488, 505
FokI	GGATG	5 cut(s)	154, 808, 1019, 1138, 1147
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	6 cut(s)	60, 214, 237, 464, 488, 505
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	491
GlaI	GCGC	2 cut(s)	491, 987
GluI	GCNGC	6 cut(s)	60, 214, 237, 464, 488, 505
GsaI	CCCAGC	1 cut(s)	700
HaeII	RGCGCY	1 cut(s)	989
HaeIII	GGCC	5 cut(s)	326, 339, 641, 1051, 1110
HapII	CCGG	4 cut(s)	323, 336, 340, 528
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	2 cut(s)	492, 988
Hin1II	CATG	7 cut(s)	613, 637, 646, 685, 815, 941, 1040
Hin6I	GCGC	2 cut(s)	490, 986
HinP1I	GCGC	2 cut(s)	490, 986
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	3 cut(s)	371, 786, 1169
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	4 cut(s)	323, 336, 340, 528
HphI	GGTGA	2 cut(s)	40, 309
Hpy166II	GTNNAC	2 cut(s)	204, 574
Hpy188I	TCNGA	1 cut(s)	676
Hpy188III	TCNNGA	4 cut(s)	580, 714, 1025, 1151
Hpy8I	GTNNAC	2 cut(s)	204, 574
Hpy99I	CGWCG	2 cut(s)	46, 335
HpyAV	CCTTC	3 cut(s)	124, 258, 631
HpyCH4III	ACNGT	2 cut(s)	331, 656
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	6 cut(s)	619, 799, 811, 925, 967, 1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 332, 345, 638, 896
HpyF3I	CTNAG	3 cut(s)	35, 69, 673
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	7 cut(s)	613, 637, 646, 685, 815, 941, 1040
HspAI	GCGC	2 cut(s)	490, 986
KroI	GCCGGC	2 cut(s)	335, 339
KroNI	GCCGGC	2 cut(s)	337, 341
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	241, 351
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	993
Lsp1109I	GCAGC	5 cut(s)	71, 200, 223, 450, 474
LweI	GCATC	3 cut(s)	577, 786, 1041
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	1151
MalI	GATC	2 cut(s)	243, 353
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	2 cut(s)	241, 351
MboII	GAAGA	6 cut(s)	98, 132, 294, 466, 653, 1139
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	41, 661
MlsI	TGGCCA	1 cut(s)	1110
MluCI	AATT	2 cut(s)	759, 1102
MluNI	TGGCCA	1 cut(s)	1110
MlyI	GAGTC	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	1110
Mph1103I	ATGCAT	2 cut(s)	801, 969
MroNI	GCCGGC	2 cut(s)	335, 339
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	1110
MseI	TTAA	3 cut(s)	110, 203, 512
MslI	CAYNNNNRTG	1 cut(s)	1104
Msp20I	TGGCCA	1 cut(s)	1110
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	4 cut(s)	323, 336, 340, 528
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	65, 332, 345, 638, 896
NaeI	GCCGGC	2 cut(s)	337, 341
NdeI	CATATG	1 cut(s)	1007
NdeII	GATC	2 cut(s)	241, 351
NgoMIV	GCCGGC	2 cut(s)	335, 339
NlaIII	CATG	7 cut(s)	613, 637, 646, 685, 815, 941, 1040
NlaIV	GGNNCC	3 cut(s)	243, 344, 508
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	1151
NsbI	TGCGCA	1 cut(s)	491
NsiI	ATGCAT	2 cut(s)	801, 969
NspI	RCATGY	1 cut(s)	941
PciSI	GCTCTTC	1 cut(s)	666
PdiI	GCCGGC	2 cut(s)	337, 341
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	786, 1169
PflMI	CCANNNNNTGG	4 cut(s)	648, 890, 914, 1047
PkrI	GCNGC	6 cut(s)	61, 215, 238, 465, 489, 506
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	696
PspN4I	GGNNCC	3 cut(s)	243, 344, 508
PstI	CTGCAG	1 cut(s)	927
PsuI	RGATCY	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	380, 653, 680
RsaNI	GTAC	3 cut(s)	379, 652, 679
RseI	CAYNNNNRTG	1 cut(s)	1104
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	110, 203, 512
SatI	GCNGC	6 cut(s)	60, 214, 237, 464, 488, 505
Sau3AI	GATC	2 cut(s)	241, 351
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	41, 661
SfaNI	GCATC	3 cut(s)	577, 786, 1041
SfcI	CTRYAG	1 cut(s)	923
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	2 cut(s)	759, 1102
SsiI	CCGC	6 cut(s)	239, 267, 346, 418, 504, 935
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	54, 647
TaaI	ACNGT	2 cut(s)	331, 656
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	311, 429
TasI	AATT	2 cut(s)	759, 1102
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	786, 1169
Tru1I	TTAA	3 cut(s)	110, 203, 512
Tru9I	TTAA	3 cut(s)	110, 203, 512
TseFI	GTSAC	1 cut(s)	1151
TseI	GCWGC	5 cut(s)	59, 213, 236, 463, 487
Tsp45I	GTSAC	1 cut(s)	1151
TspDTI	ATGAA	3 cut(s)	650, 830, 1070
TspGWI	ACGGA	3 cut(s)	179, 185, 654
Van91I	CCANNNNNTGG	4 cut(s)	648, 890, 914, 1047
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	22, 911
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	2 cut(s)	801, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.