Rmu_sc0006611.1_g000003

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006611.1
OG0003206
Physical Location & Seq
Forward (+)
5566 .. 13312
7747 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1599 bp
atggataggaattctaatggtgatgaagaacccagttcgtgggaagagctttacagtatcaatttgataccatcagagttgtttctcaagttcaggaaagaactacagggtttaagggtcggtctcaatttggagttctataatgctccaatcaatgagtatcaagctaagattgtgttgaagcccttagctccggatcggaggtggaagttcatctatgagcctatccgtcaagatgtccgtgttctttccaagaagattcctctaactaactttctaaatcttcaggttggcgttggccataattttcgaatgaatgcaactggatggaaatggaagcttactacatgttttggtggagatggcatatctcggattcggaataagacatcacttggcgtatgccctggtgtagatttgcgctttgggtggagggcggattatgtacttccagaagttactggggctctgggtactggcgaagcattgtttaacatgagtagtgggaaattggaagcatcactggacagagttgagggcattctaacgcacaatgataagggcattctaactcacaatgatacacccgatctatacgactataaagaccagacccaaaatccaaaccgtaacagaatcgccgccgccgccataaccaccgccgagcccaatcaccaaacccattgcgattccaatcccttatcgtcgctgcacaatcgcatctccgagcttggtttccgattggttccgaaacgtggactggtgagattttcccatgatggaacaaggcgtcctcaaaagtttgacaggactgatttcgtttggtctatgaaaatggagtcaaagttttctcatgacaggaagattgaagaattgtcagtagagcttccaacaccacctagtcctcatcttgattcgtctagggaccgtgctcttcaatttaaccgggagcagccttcaggtaaagatttagatcctgacaatgtgtttgaatttggaggatatattgcacgagaagccatgtgcgatgaagaatactggacagcagcatatttacgtgcagaaactcgctgggaagatcgaaatcatgaccgatatgttgaaagccacctaaggaaatatacagagcaggagtttaatgaaatcaaaaggcgaagcaatgtccagtttgggaaaaaatgcagatgcattgtgacgatgaagaaggattcaaagaatgtgaaacgcactgttctgaaaagcatggttggaacacttgatttgaggatccggtacttgttgaatggagagacctttccagatgaacaagtaaaaccttccatcttcagcagcttctcaatgactcgctcaaatagatatggttatattgcaaacttgtgtgttatcaaaccagcacgtcgccagggtgttgcaagaaatatgctgcagtttgctattaaacaagcaaagttggatgaattagaacgggtatatgtgcatgttgacagaaagaacaaaaatgcacaggatctgtacgaaaagatgggatttcagatcattgaaagcacgaaccctcagttggaaaaagatgaactttatttgctttgtttgaagatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

532

Amino Acids

61.67

Weight (kDa)

9.06

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 13 - 184 1.2e-88 Domain of unknown function (DUF7781)
Acetyltransf_1 PF00583 444 - 510 6.3e-13 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 445 - 515 5.2e-10 Acetyltransferase (GNAT) domain
FR47 PF08445 451 - 515 1.1e-06 FR47-like protein
Acetyltransf_7 PF13508 453 - 511 4.9e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 5 cut(s) 437, 642, 645, 648, 660
AclWI GGATC 5 cut(s) 204, 968, 1261, 1274, 1515
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 2 cut(s) 10, 992
AcuI CTGAAG 3 cut(s) 269, 942, 1309
AcyI GRCGYC 1 cut(s) 790
AfaI GTAC 4 cut(s) 447, 475, 1274, 1514
AfiI CCNNNNNNNGG 3 cut(s) 39, 755, 1558
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 9 cut(s) 181, 869, 938, 992, 1103, 1212, 1282, 1541, 1591
AjiI CACGTC 1 cut(s) 1397
AjnI CCWGG 2 cut(s) 406, 1401
AjuI GAANNNNNNNTTGG 2 cut(s) 1541, 1573
AloI GAACNNNNNNTCC 2 cut(s) 775, 807
AluBI AGCT 7 cut(s) 49, 167, 191, 340, 730, 886, 1332
AluI AGCT 7 cut(s) 49, 167, 191, 340, 730, 886, 1332
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 2 cut(s) 128, 1283
AlwI GGATC 5 cut(s) 204, 968, 1261, 1274, 1515
AlwNI CAGNNNCTG 1 cut(s) 1510
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 5 cut(s) 709, 952, 1046, 1329, 1423
ApoI RAATTY 2 cut(s) 10, 992
ArsI GACNNNNNNTTYG 2 cut(s) 971, 1003
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 3 cut(s) 32, 665, 775
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 925
AxyI CCTNAGG 1 cut(s) 1112
BalI TGGCCA 1 cut(s) 300
BamHI GGATCC 1 cut(s) 1266
BanII GRGCYC 2 cut(s) 469, 669
BauI CACGAG 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 5 cut(s) 696, 964, 1058, 1341, 1410
BccI CCATC 6 cut(s) 79, 321, 356, 773, 1328, 1516
BciT130I CCWGG 2 cut(s) 408, 1403
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 2 cut(s) 128, 1283
BfaI CTAG 3 cut(s) 900, 921, 1597
BfmI CTRYAG 2 cut(s) 104, 1424
BglII AGATCT 1 cut(s) 1593
BisI GCNGC 8 cut(s) 642, 645, 648, 710, 953, 1047, 1330, 1424
BlsI GCNGC 8 cut(s) 643, 646, 649, 711, 954, 1048, 1331, 1425
Bme1390I CCNGG 3 cut(s) 408, 947, 1403
Bme18I GGWCC 1 cut(s) 925
BmgBI CACGTC 1 cut(s) 1397
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 3 cut(s) 747, 926, 1268
BmrFI CCNGG 3 cut(s) 408, 947, 1403
BmrI ACTGGG 2 cut(s) 27, 471
BmsI GCATC 3 cut(s) 527, 729, 1175
BmuI ACTGGG 2 cut(s) 27, 471
Bpu10I CCTNAGC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 1058
BsaBI GATNNNNATC 3 cut(s) 693, 972, 1083
BsaHI GRCGYC 1 cut(s) 790
BsaI GGTCTC 2 cut(s) 128, 1283
BsaJI CCNNGG 2 cut(s) 406, 1402
BsaWI WCCGGW 2 cut(s) 193, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 755, 1558
Bse1I ACTGG 8 cut(s) 33, 328, 466, 481, 528, 765, 1043, 1165
Bse21I CCTNAGG 1 cut(s) 1112
Bse3DI GCAATG 2 cut(s) 682, 1165
Bse8I GATNNNNATC 3 cut(s) 693, 972, 1083
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 2 cut(s) 408, 1403
BseDI CCNNGG 2 cut(s) 406, 1402
BseGI GGATG 2 cut(s) 332, 1459
BseJI GATNNNNATC 3 cut(s) 693, 972, 1083
BseLI CCNNNNNNNGG 3 cut(s) 39, 755, 1558
BseMI GCAATG 2 cut(s) 682, 1165
BseMII CTCAG 1 cut(s) 1568
BseNI ACTGG 8 cut(s) 33, 328, 466, 481, 528, 765, 1043, 1165
BseXI GCAGC 5 cut(s) 696, 964, 1058, 1341, 1410
BseYI CCCAGC 1 cut(s) 1071
BsgI GTGCAG 2 cut(s) 695, 1080
BshFI GGCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 3 cut(s) 194, 946, 1270
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 3 cut(s) 39, 755, 1558
BsmAI GTCTC 2 cut(s) 128, 1283
BsmFI GGGAC 1 cut(s) 938
BsmI GAATGC 3 cut(s) 322, 540, 564
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 2 cut(s) 128, 1283
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 3 cut(s) 469, 669, 934
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
BspACI CCGC 5 cut(s) 437, 642, 645, 648, 660
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 1567
BspEI TCCGGA 1 cut(s) 193
BspHI TCATGA 2 cut(s) 853, 1087
BspLI GGNNCC 3 cut(s) 747, 926, 1268
BspMAI CTGCAG 1 cut(s) 1428
BspPI GGATC 5 cut(s) 204, 968, 1261, 1274, 1515
BspQI GCTCTTC 2 cut(s) 39, 939
BspT104I TTCGAA 1 cut(s) 310
BspTNI GGTCTC 2 cut(s) 128, 1283
BsrDI GCAATG 2 cut(s) 682, 1165
BsrI ACTGG 8 cut(s) 33, 328, 466, 481, 528, 765, 1043, 1165
BssECI CCNNGG 2 cut(s) 406, 1402
BssMI GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
BssNI GRCGYC 1 cut(s) 790
BssSI CACGAG 1 cut(s) 1011
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 2 cut(s) 408, 1403
Bst4CI ACNGT 4 cut(s) 56, 629, 929, 1231
Bst6I CTCTTC 2 cut(s) 39, 939
BstACI GRCGYC 1 cut(s) 790
BstBAI YACGTR 1 cut(s) 1058
BstBI TTCGAA 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 168, 187, 1112, 1554
BstF5I GGATG 2 cut(s) 332, 1459
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 8 cut(s) 199, 592, 976, 1081, 1269, 1510, 1536, 1596
BstMAI GTCTC 2 cut(s) 128, 1283
BstMBI GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
BstMWI GCNNNNNNNGC 2 cut(s) 647, 1016
BstNI CCWGG 2 cut(s) 408, 1403
BstNSI RCATGY 2 cut(s) 351, 1481
BstSCI CCNGG 3 cut(s) 406, 945, 1401
BstSFI CTRYAG 2 cut(s) 104, 1424
BstV1I GCAGC 5 cut(s) 696, 964, 1058, 1341, 1410
BstX2I RGATCY 4 cut(s) 973, 1266, 1507, 1593
BstYI RGATCY 4 cut(s) 973, 1266, 1507, 1593
Bsu36I CCTNAGG 1 cut(s) 1112
BsuRI GGCC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 1041
BtrI CACGTC 1 cut(s) 1397
BtsCI GGATG 2 cut(s) 332, 1459
BtsIMutI CAGTG 2 cut(s) 521, 1227
CaiI CAGNNNCTG 1 cut(s) 1510
CciI TCATGA 2 cut(s) 853, 1087
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 779
Csp6I GTAC 4 cut(s) 446, 474, 1273, 1513
CviAII CATG 8 cut(s) 348, 496, 776, 854, 1021, 1088, 1243, 1478
CviQI GTAC 4 cut(s) 446, 474, 1273, 1513
DdeI CTNAG 4 cut(s) 168, 187, 1112, 1554
DpnI GATC 8 cut(s) 198, 591, 975, 1080, 1268, 1509, 1535, 1595
DpnII GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 39, 939
EarI CTCTTC 2 cut(s) 39, 939
EciI GGCGGA 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 469, 669
Eco31I GGTCTC 2 cut(s) 128, 1283
Eco47I GGWCC 1 cut(s) 925
Eco57I CTGAAG 3 cut(s) 269, 942, 1309
Eco81I CCTNAGG 1 cut(s) 1112
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 406, 1401
EcoT22I ATGCAT 1 cut(s) 1190
EcoT38I GRGCYC 2 cut(s) 469, 669
FaeI CATG 8 cut(s) 351, 499, 779, 857, 1024, 1091, 1246, 1481
FalI AAGNNNNNCTT 2 cut(s) 1557, 1589
FaqI GGGAC 1 cut(s) 938
FatI CATG 8 cut(s) 347, 495, 775, 853, 1020, 1087, 1242, 1477
Fnu4HI GCNGC 8 cut(s) 642, 645, 648, 710, 953, 1047, 1330, 1424
FokI GGATG 2 cut(s) 339, 1466
FriOI GRGCYC 2 cut(s) 469, 669
Fsp4HI GCNGC 8 cut(s) 642, 645, 648, 710, 953, 1047, 1330, 1424
FspBI CTAG 3 cut(s) 900, 921, 1597
GlaI GCGC 1 cut(s) 422
GluI GCNGC 8 cut(s) 642, 645, 648, 710, 953, 1047, 1330, 1424
GsaI CCCAGC 1 cut(s) 1075
HaeIII GGCC 1 cut(s) 300
HapII CCGG 3 cut(s) 194, 946, 1270
HgaI GACGC 1 cut(s) 779
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 790
Hin1II CATG 8 cut(s) 351, 499, 779, 857, 1024, 1091, 1246, 1481
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 8 cut(s) 259, 376, 636, 689, 839, 914, 1208, 1342
HpaII CCGG 3 cut(s) 194, 946, 1270
HphI GGTGA 3 cut(s) 32, 665, 775
Hpy166II GTNNAC 2 cut(s) 758, 1483
Hpy188I TCNGA 9 cut(s) 76, 201, 375, 381, 727, 740, 750, 1236, 1533
Hpy188III TCNNGA 9 cut(s) 94, 194, 233, 452, 854, 911, 977, 1088, 1298
Hpy8I GTNNAC 2 cut(s) 758, 1483
Hpy99I CGWCG 2 cut(s) 709, 1401
HpyAV CCTTC 3 cut(s) 966, 1198, 1326
HpyCH4III ACNGT 4 cut(s) 56, 629, 929, 1231
HpyCH4IV ACGT 3 cut(s) 754, 1057, 1396
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 1016
HpyF3I CTNAG 4 cut(s) 168, 187, 1112, 1554
HpySE526I ACGT 3 cut(s) 754, 1057, 1396
Hsp92I GRCGYC 1 cut(s) 790
Hsp92II CATG 8 cut(s) 351, 499, 779, 857, 1024, 1091, 1246, 1481
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
LguI GCTCTTC 2 cut(s) 39, 939
LmnI GCTCC 3 cut(s) 151, 196, 949
Lsp1109I GCAGC 5 cut(s) 696, 964, 1058, 1341, 1410
LweI GCATC 3 cut(s) 527, 729, 1175
MaeI CTAG 3 cut(s) 900, 921, 1597
MaeII ACGT 3 cut(s) 754, 1057, 1396
MaeIII GTNAC 3 cut(s) 457, 629, 1192
MalI GATC 8 cut(s) 198, 591, 975, 1080, 1268, 1509, 1535, 1595
MboI GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
MflI RGATCY 4 cut(s) 973, 1266, 1507, 1593
MhlI GDGCHC 3 cut(s) 469, 669, 934
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 9 cut(s) 10, 61, 127, 304, 509, 872, 938, 992, 1457
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 2 cut(s) 848, 1336
MmeI TCCRAC 4 cut(s) 914, 1228, 1431, 1539
MnlI CCTC 9 cut(s) 195, 273, 426, 529, 804, 915, 992, 1257, 1563
Mox20I TGGCCA 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 1190
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 300
MseI TTAA 5 cut(s) 113, 492, 942, 1137, 1437
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 3 cut(s) 194, 946, 1270
MspR9I CCNGG 3 cut(s) 408, 947, 1403
Mva1269I GAATGC 3 cut(s) 322, 540, 564
MvaI CCWGG 2 cut(s) 408, 1403
MwoI GCNNNNNNNGC 2 cut(s) 647, 1016
NciI CCSGG 1 cut(s) 947
NdeII GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
NlaIII CATG 8 cut(s) 351, 499, 779, 857, 1024, 1091, 1246, 1481
NlaIV GGNNCC 3 cut(s) 747, 926, 1268
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 1 cut(s) 1192
NsiI ATGCAT 1 cut(s) 1190
NspI RCATGY 2 cut(s) 351, 1481
NspV TTCGAA 1 cut(s) 310
PagI TCATGA 2 cut(s) 853, 1087
PciI ACATGT 1 cut(s) 347
PciSI GCTCTTC 2 cut(s) 39, 939
PctI GAATGC 3 cut(s) 322, 540, 564
PfeI GAWTC 6 cut(s) 259, 376, 636, 689, 914, 1208
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 8 cut(s) 643, 646, 649, 711, 954, 1048, 1331, 1425
PleI GAGTC 2 cut(s) 847, 1336
PpsI GAGTC 2 cut(s) 847, 1336
Ppu21I YACGTR 1 cut(s) 1058
PscI ACATGT 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 406, 1401
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 406, 1401
PspN4I GGNNCC 3 cut(s) 747, 926, 1268
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 1428
PstNI CAGNNNCTG 1 cut(s) 1510
PsuI RGATCY 4 cut(s) 973, 1266, 1507, 1593
RsaI GTAC 4 cut(s) 447, 475, 1274, 1514
RsaNI GTAC 4 cut(s) 446, 474, 1273, 1513
SapI GCTCTTC 2 cut(s) 39, 939
SaqAI TTAA 5 cut(s) 113, 492, 942, 1137, 1437
SatI GCNGC 8 cut(s) 642, 645, 648, 710, 953, 1047, 1330, 1424
Sau3AI GATC 8 cut(s) 196, 589, 973, 1078, 1266, 1507, 1533, 1593
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 2 cut(s) 848, 1336
ScrFI CCNGG 3 cut(s) 408, 947, 1403
SduI GDGCHC 3 cut(s) 469, 669, 934
SfaNI GCATC 3 cut(s) 527, 729, 1175
SfcI CTRYAG 2 cut(s) 104, 1424
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 1 cut(s) 925
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 9 cut(s) 10, 61, 127, 304, 509, 872, 938, 992, 1457
SsiI CCGC 5 cut(s) 437, 642, 645, 648, 660
SspMI CTAG 3 cut(s) 900, 921, 1597
StyD4I CCNGG 3 cut(s) 406, 945, 1401
TaaI ACNGT 4 cut(s) 56, 629, 929, 1231
TaiI ACGT 3 cut(s) 757, 1060, 1399
TaqI TCGA 2 cut(s) 310, 1081
TaqII GACCGA 2 cut(s) 110, 1107
TasI AATT 9 cut(s) 10, 61, 127, 304, 509, 872, 938, 992, 1457
TatI WGTACW 1 cut(s) 445
TauI GCSGC 3 cut(s) 644, 647, 650
TfiI GAWTC 6 cut(s) 259, 376, 636, 689, 914, 1208
Tru1I TTAA 5 cut(s) 113, 492, 942, 1137, 1437
Tru9I TTAA 5 cut(s) 113, 492, 942, 1137, 1437
TscAI CASTG 2 cut(s) 528, 1234
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 5 cut(s) 709, 952, 1046, 1329, 1423
Tsp45I GTSAC 1 cut(s) 1192
TspGWI ACGGA 2 cut(s) 218, 230
TspRI CASTG 2 cut(s) 528, 1234
Van91I CCANNNNNTGG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 925
XapI RAATTY 2 cut(s) 10, 992
XceI RCATGY 2 cut(s) 351, 1481
XspI CTAG 3 cut(s) 900, 921, 1597
Zsp2I ATGCAT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.