Rmu_sc0006685.1_g000004

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006685.1
OG0002140
Physical Location & Seq
Reverse (-)
16796 .. 22709
5914 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ctgtcttctaaacaggttgatagagatatgtcgtgtgatactgcaaaggaaattgcatctgtagtggactcatctgttactgaaaggaaagaagacatggggaattcagatgagccagagagttcaagtcacaaagttcctgagggggttgatccatgtagatcagatgaagtggggcactctcatgatcatgttggggattcacctgcaaggaaaaagggtaaattgtatggtacacgatatttcatcattaagagtttgtctcatgagaatatccaactatcgattgagaaaggaatttgggctactcaagtgatgaatgaaccaattttggaagacgcttttcataattctggtaaagtaattttaatattcagtgtcaacatgagtggtttcttccaagggtatgcacaaatgatgtcttctgttggatggaggcgagacaatgtatggagtcaaggaactagtagaagtaatccctggggacgcagttttaaggtcaaatggctgcggttaaatgatctgcctttccaacaaactcttcatctcaagaatccattgaacgagtacaaacctgttaaaattagcagagactgccaggagttgtctccagatgttggagaagctctctgtgagcttcttgataggcataatgatctaaacggcctgaataggccctgtgtagagcctccatgttcggtaggggaaaaagagtatagtatgccagtgcatctctcgtggtcgcaaactcccatgctctatccttccatgctttatcaacaacagcctgaaacaaagagatttcatctagcgaatcagaaatctactgatagccggccagctagtgttctgactgaggatgattttcttgaaatgtcttatgaagaatatctggaggtctatggcaggagcaggaaggaactatatcagcctggttctagatcacagaagtcatccagaagtaaaatgcaggaggatgatttaaactcaagttacggaggtaaccgcatctgctcaaggaaaagagctcatcagtcatcccataagcaatcacaatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

353

Amino Acids

40.26

Weight (kDa)

6.49

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 79 - 214 4.3e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 617
AciI CCGC 2 cut(s) 511, 1006
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 836
AcsI RAATTY 2 cut(s) 103, 297
AfaI GTAC 2 cut(s) 235, 569
AfiI CCNNNNNNNGG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 126, 562, 872
AhlI ACTAGT 1 cut(s) 464
AjnI CCWGG 3 cut(s) 479, 597, 931
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 626, 637, 842, 1028
AluI AGCT 4 cut(s) 626, 637, 842, 1028
Alw21I GWGCWC 1 cut(s) 1030
Alw26I GTCTC 4 cut(s) 267, 435, 585, 612
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 594
AoxI GGCC 3 cut(s) 664, 674, 836
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 2 cut(s) 103, 297
AspS9I GGNCC 1 cut(s) 675
AsuHPI GGTGA 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 1030
BauI CACGAG 1 cut(s) 736
BbsI GAAGAC 3 cut(s) 99, 342, 414
Bbv12I GWGCWC 1 cut(s) 1030
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 426
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 481, 599, 933
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 4 cut(s) 267, 435, 585, 612
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 4 cut(s) 465, 809, 843, 939
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 3 cut(s) 481, 599, 933
BmgT120I GGNCC 1 cut(s) 675
BmrFI CCNGG 3 cut(s) 481, 599, 933
BmsI GCATC 3 cut(s) 65, 739, 1017
BpiI GAAGAC 3 cut(s) 99, 342, 414
BplI GAGNNNNNCTC 4 cut(s) 247, 279, 612, 644
BpmI CTGGAG 2 cut(s) 594, 914
BpuEI CTTGAG 4 cut(s) 294, 533, 973, 1000
Bsa29I ATCGAT 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 400, 479, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 1 cut(s) 834
Bse1I ACTGG 1 cut(s) 725
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 3 cut(s) 481, 599, 933
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 400, 479, 480
BseGI GGATG 5 cut(s) 437, 865, 953, 982, 1037
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMII CTCAG 2 cut(s) 132, 846
BseNI ACTGG 1 cut(s) 725
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 495
BshFI GGCC 3 cut(s) 666, 676, 838
BshVI ATCGAT 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 1030
BsiSI CCGG 1 cut(s) 835
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 4 cut(s) 267, 435, 585, 612
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 3 cut(s) 666, 676, 838
Bsp1286I GDGCHC 2 cut(s) 180, 1030
Bsp143I GATC 6 cut(s) 151, 161, 187, 520, 655, 941
BspACI CCGC 2 cut(s) 511, 1006
BspANI GGCC 3 cut(s) 666, 676, 838
BspCNI CTCAG 2 cut(s) 133, 847
BspDI ATCGAT 1 cut(s) 284
BspHI TCATGA 2 cut(s) 184, 265
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 834
BsrI ACTGG 1 cut(s) 725
BssAI RCCGGY 1 cut(s) 834
BssECI CCNNGG 3 cut(s) 400, 479, 480
BssMI GATC 6 cut(s) 151, 161, 187, 520, 655, 941
BssSI CACGAG 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 736
Bst2UI CCWGG 3 cut(s) 481, 599, 933
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 836, 840
BstDEI CTNAG 2 cut(s) 141, 855
BstEII GGTNACC 1 cut(s) 1001
BstF5I GGATG 5 cut(s) 437, 865, 953, 982, 1037
BstKTI GATC 6 cut(s) 154, 164, 190, 523, 658, 944
BstMAI GTCTC 4 cut(s) 267, 435, 585, 612
BstMBI GATC 6 cut(s) 151, 161, 187, 520, 655, 941
BstMWI GCNNNNNNNGC 1 cut(s) 594
BstNI CCWGG 3 cut(s) 481, 599, 933
BstPI GGTNACC 1 cut(s) 1001
BstSCI CCNGG 3 cut(s) 479, 597, 931
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 3 cut(s) 99, 342, 414
Bsu15I ATCGAT 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 666, 676, 838
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 5 cut(s) 437, 865, 953, 982, 1037
BtsIMutI CAGTG 2 cut(s) 382, 732
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 836, 840
CaiI CAGNNNCTG 1 cut(s) 594
CciI TCATGA 2 cut(s) 184, 265
Cfr10I RCCGGY 1 cut(s) 834
Cfr13I GGNCC 1 cut(s) 675
ClaI ATCGAT 1 cut(s) 284
CseI GACGC 2 cut(s) 347, 495
Csp6I GTAC 2 cut(s) 234, 568
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 9 cut(s) 97, 156, 185, 191, 266, 385, 693, 754, 769
CviQI GTAC 2 cut(s) 234, 568
DdeI CTNAG 2 cut(s) 141, 855
DpnI GATC 6 cut(s) 153, 163, 189, 522, 657, 943
DpnII GATC 6 cut(s) 151, 161, 187, 520, 655, 941
DraI TTTAAA 1 cut(s) 984
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 1028
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 1030
Eco53kI GAGCTC 1 cut(s) 1028
Eco81I CCTNAGG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 1001
EcoICRI GAGCTC 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 675
EcoO65I GGTNACC 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 3 cut(s) 479, 597, 931
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 1030
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 9 cut(s) 100, 159, 188, 194, 269, 388, 696, 757, 772
FaqI GGGAC 1 cut(s) 498
FatI CATG 9 cut(s) 96, 155, 184, 190, 265, 384, 692, 753, 768
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 5 cut(s) 444, 872, 940, 989, 1024
FriOI GRGCYC 1 cut(s) 1030
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 4 cut(s) 465, 809, 843, 939
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 2 cut(s) 594, 914
HaeIII GGCC 3 cut(s) 666, 676, 838
HapII CCGG 1 cut(s) 835
HgaI GACGC 2 cut(s) 347, 495
Hin1II CATG 9 cut(s) 100, 159, 188, 194, 269, 388, 696, 757, 772
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 68, 200, 454, 553, 814
HpaII CCGG 1 cut(s) 835
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 3 cut(s) 67, 236, 382
Hpy188I TCNGA 4 cut(s) 109, 166, 819, 852
Hpy8I GTNNAC 3 cut(s) 67, 236, 382
HpyAV CCTTC 2 cut(s) 774, 910
HpyCH4V TGCA 6 cut(s) 44, 56, 209, 410, 730, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 594
HpyF3I CTNAG 2 cut(s) 141, 855
Hsp92II CATG 9 cut(s) 100, 159, 188, 194, 269, 388, 696, 757, 772
KroI GCCGGC 1 cut(s) 834
KroNI GCCGGC 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 151, 161, 187, 520, 655, 941
LmnI GCTCC 1 cut(s) 909
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 3 cut(s) 65, 739, 1017
MaeI CTAG 4 cut(s) 465, 809, 843, 939
MaeIII GTNAC 4 cut(s) 76, 128, 992, 1001
MalI GATC 6 cut(s) 153, 163, 189, 522, 657, 943
MboI GATC 6 cut(s) 151, 161, 187, 520, 655, 941
MboII GAAGA 6 cut(s) 104, 347, 388, 414, 533, 896
MhlI GDGCHC 2 cut(s) 180, 1030
MluCI AATT 8 cut(s) 51, 103, 224, 297, 327, 349, 363, 582
MlyI GAGTC 2 cut(s) 62, 463
MmeI TCCRAC 4 cut(s) 301, 409, 556, 598
MnlI CCTC 7 cut(s) 136, 429, 699, 850, 889, 967, 992
MroNI GCCGGC 1 cut(s) 834
MseI TTAA 6 cut(s) 252, 368, 495, 515, 579, 983
MslI CAYNNNNRTG 2 cut(s) 183, 189
MspI CCGG 1 cut(s) 835
MspR9I CCNGG 3 cut(s) 481, 599, 933
MvaI CCWGG 3 cut(s) 481, 599, 933
MwoI GCNNNNNNNGC 1 cut(s) 594
NaeI GCCGGC 1 cut(s) 836
NdeII GATC 6 cut(s) 151, 161, 187, 520, 655, 941
NgoMIV GCCGGC 1 cut(s) 834
NlaIII CATG 9 cut(s) 100, 159, 188, 194, 269, 388, 696, 757, 772
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 2 cut(s) 184, 265
PaqCI CACCTGC 1 cut(s) 214
PasI CCCWGGG 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 836
PfeI GAWTC 3 cut(s) 200, 553, 814
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 2 cut(s) 62, 462
PpsI GAGTC 2 cut(s) 62, 462
Psp124BI GAGCTC 1 cut(s) 1030
Psp6I CCWGG 3 cut(s) 479, 597, 931
PspEI GGTNACC 1 cut(s) 1001
PspGI CCWGG 3 cut(s) 479, 597, 931
PspPI GGNCC 1 cut(s) 675
PstNI CAGNNNCTG 1 cut(s) 594
RsaI GTAC 2 cut(s) 235, 569
RsaNI GTAC 2 cut(s) 234, 568
RseI CAYNNNNRTG 2 cut(s) 183, 189
SacI GAGCTC 1 cut(s) 1030
SaqAI TTAA 6 cut(s) 252, 368, 495, 515, 579, 983
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 6 cut(s) 151, 161, 187, 520, 655, 941
Sau96I GGNCC 1 cut(s) 675
SchI GAGTC 2 cut(s) 62, 463
ScrFI CCNGG 3 cut(s) 481, 599, 933
SduI GDGCHC 2 cut(s) 180, 1030
SfaNI GCATC 3 cut(s) 65, 739, 1017
SfcI CTRYAG 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 183, 189
SmlI CTYRAG 4 cut(s) 309, 548, 988, 1015
SmoI CTYRAG 4 cut(s) 309, 548, 988, 1015
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 8 cut(s) 51, 103, 224, 297, 327, 349, 363, 582
SsiI CCGC 2 cut(s) 511, 1006
SspI AATATT 1 cut(s) 372
SspMI CTAG 4 cut(s) 465, 809, 843, 939
SstI GAGCTC 1 cut(s) 1030
StyD4I CCNGG 3 cut(s) 479, 597, 931
StyI CCWWGG 1 cut(s) 400
TaqI TCGA 1 cut(s) 284
TasI AATT 8 cut(s) 51, 103, 224, 297, 327, 349, 363, 582
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 3 cut(s) 200, 553, 814
Tru1I TTAA 6 cut(s) 252, 368, 495, 515, 579, 983
Tru9I TTAA 6 cut(s) 252, 368, 495, 515, 579, 983
TscAI CASTG 2 cut(s) 382, 732
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 8 cut(s) 183, 235, 332, 335, 336, 533, 794, 897
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 2 cut(s) 382, 732
Van91I CCANNNNNTGG 1 cut(s) 617
XapI RAATTY 2 cut(s) 103, 297
XbaI TCTAGA 1 cut(s) 938
XspI CTAG 4 cut(s) 465, 809, 843, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.