Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007027.1

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Reverse (-)

33294 .. 34928

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggagccccaagaacaccaccaccaccacccggaaaccctaacccaaacctccccccccccccgacccccccccatcaccccccctcaaaaccaacaagccataatcctcacccctgtccctcaagccaagtccgtccccccaatctcaccccctttccatttccaacccccctccaagatcatccaatcccccgacgacctccgccgcttccacgactccgattccggcaaacacttcctcggcttcgtcgtcgccctctccgaatccatccgctccaagaaaatctccgacccctgccaccactcccccgtcaccgccgccatcgtctccattctcgacactctcctccgttggatcgacgaaatccctcccactcagcaagccgcccgatacggcaacgtttcgtaccgcgtctggcacgagcgtttggtcgagaatagctacaacctaatgatgcagttcctcccccaacatctggaagcttccaccgtcgagatcgtcccttatttcacagacagcttcggaaacgcgagccggatcgactacggcaccggccacgagaccaatttcgcggcgtggctttattgcctggcgagaatggaggtcattaaggaagaggattaccctgccgtggtggccagagtgttcgtcaagtacttggagttgatgaggaagctgcagctggtgtattgcttagagccggcggggtctcacggcgtttggggccttgacgactaccatttcctgcccttcattttcggctcttcgcagttgattgatcacaagcatatgaagcccaagtccattcataatgatgatatactggagaatttttcaaatgagtatatgtatctttcggggattgcttttgtgaagaaggtgaagaagggtccgttttcggagcactctcctttgttggatgatatcagtggagtgccgaattggaacaaagtcaataaggggatgctgaagatgtataaggttgaggtgttggagaaggtacccatcatgcagcatttcctatttggctggctcatcaactgggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

350

Amino Acids

40.2

Weight (kDa)

6.36

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	58 - 349	2e-122	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1003
AccB1I	GGYRCC	2 cut(s)	551, 1003
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccBSI	CCGCTC	1 cut(s)	276
AccII	CGCG	3 cut(s)	414, 533, 575
AciI	CCGC	9 cut(s)	205, 208, 274, 318, 321, 387, 412, 575, 707
AclI	AACGTT	1 cut(s)	402
AclWI	GGATC	2 cut(s)	365, 548
AcoI	YGGCCR	2 cut(s)	556, 639
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	1 cut(s)	992
AfaI	GTAC	3 cut(s)	410, 659, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	31, 478, 634
AgsI	TTSAA	1 cut(s)	840
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	5 cut(s)	444, 485, 522, 679, 685
AluI	AGCT	5 cut(s)	444, 485, 522, 679, 685
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	3 cut(s)	334, 557, 717
AlwI	GGATC	2 cut(s)	365, 548
AoxI	GGCC	3 cut(s)	556, 639, 727
ApeKI	GCWGC	3 cut(s)	679, 682, 1015
ApoI	RAATTY	1 cut(s)	832
Asp718I	GGTACC	1 cut(s)	1003
AspS9I	GGNCC	2 cut(s)	727, 893
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	5 cut(s)	70, 103, 141, 307, 895
AvaII	GGWCC	1 cut(s)	893
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	551, 1003
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	2 cut(s)	422, 560
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	666, 694, 1027
BccI	CCATC	4 cut(s)	83, 278, 332, 1016
BceAI	ACGGC	4 cut(s)	412, 565, 617, 733
BciT130I	CCWGG	1 cut(s)	593
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	334, 557, 717
BfmI	CTRYAG	1 cut(s)	680
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	7 cut(s)	208, 321, 387, 576, 680, 683, 1016
BlsI	GCNGC	7 cut(s)	209, 322, 388, 577, 681, 684, 1017
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	32, 593
Bme18I	GGWCC	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	727, 893
BmiI	GGNNCC	5 cut(s)	6, 553, 728, 894, 1005
BmrFI	CCNGG	2 cut(s)	32, 593
BmsI	GCATC	2 cut(s)	447, 957
BpmI	CTGGAG	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	557, 717
BsaJI	CCNNGG	2 cut(s)	241, 633
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 478, 634
Bse118I	RCCGGY	2 cut(s)	554, 703
Bse1I	ACTGG	2 cut(s)	831, 1049
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	241, 633
BseGI	GGATG	4 cut(s)	183, 270, 928, 972
BseLI	CCNNNNNNNGG	3 cut(s)	31, 478, 634
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	831, 1049
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	666, 694, 1027
Bsh1236I	CGCG	3 cut(s)	414, 533, 575
BshFI	GGCC	3 cut(s)	558, 641, 729
BshNI	GGYRCC	2 cut(s)	551, 1003
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	5 cut(s)	32, 228, 538, 555, 704
BslFI	GGGAC	3 cut(s)	104, 122, 488
BslI	CCNNNNNNNGG	3 cut(s)	31, 478, 634
BsmAI	GTCTC	3 cut(s)	334, 557, 717
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	3 cut(s)	104, 122, 488
BsnI	GGCC	3 cut(s)	558, 641, 729
Bso31I	GGTCTC	2 cut(s)	557, 717
Bsp1286I	GDGCHC	2 cut(s)	9, 909
Bsp143I	GATC	5 cut(s)	180, 357, 498, 540, 781
BspACI	CCGC	9 cut(s)	205, 208, 274, 318, 321, 387, 412, 575, 707
BspANI	GGCC	3 cut(s)	558, 641, 729
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	3 cut(s)	414, 533, 575
BspLI	GGNNCC	5 cut(s)	6, 553, 728, 894, 1005
BspMAI	CTGCAG	1 cut(s)	684
BspPI	GGATC	2 cut(s)	365, 548
BspQI	GCTCTTC	1 cut(s)	772
BspT107I	GGYRCC	2 cut(s)	551, 1003
BspTNI	GGTCTC	2 cut(s)	557, 717
BsrBI	CCGCTC	1 cut(s)	276
BsrFI	RCCGGY	2 cut(s)	554, 703
BsrI	ACTGG	2 cut(s)	831, 1049
BssAI	RCCGGY	2 cut(s)	554, 703
BssECI	CCNNGG	2 cut(s)	241, 633
BssMI	GATC	5 cut(s)	180, 357, 498, 540, 781
BssSI	CACGAG	2 cut(s)	422, 560
Bst2BI	CACGAG	2 cut(s)	422, 560
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	612, 772
BstC8I	GCNNGC	4 cut(s)	384, 535, 705, 1034
BstDEI	CTNAG	2 cut(s)	378, 697
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	183, 270, 928, 972
BstFNI	CGCG	3 cut(s)	414, 533, 575
BstKTI	GATC	5 cut(s)	183, 360, 501, 543, 784
BstMAI	GTCTC	3 cut(s)	334, 557, 717
BstMBI	GATC	5 cut(s)	180, 357, 498, 540, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	638, 726, 796
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	30, 591
BstSFI	CTRYAG	1 cut(s)	680
BstUI	CGCG	3 cut(s)	414, 533, 575
BstV1I	GCAGC	3 cut(s)	666, 694, 1027
BsuRI	GGCC	3 cut(s)	558, 641, 729
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	4 cut(s)	183, 270, 928, 972
BtsIMutI	CAGTG	1 cut(s)	937
Cac8I	GCNNGC	4 cut(s)	384, 535, 705, 1034
Cfr10I	RCCGGY	2 cut(s)	554, 703
Cfr13I	GGNCC	2 cut(s)	727, 893
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	3 cut(s)	409, 658, 1004
CviAII	CATG	1 cut(s)	1012
CviQI	GTAC	3 cut(s)	409, 658, 1004
DdeI	CTNAG	2 cut(s)	378, 697
DpnI	GATC	5 cut(s)	182, 359, 500, 542, 783
DpnII	GATC	5 cut(s)	180, 357, 498, 540, 781
EaeI	YGGCCR	2 cut(s)	556, 639
Eam1104I	CTCTTC	2 cut(s)	612, 772
EarI	CTCTTC	2 cut(s)	612, 772
EciI	GGCGGA	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	2 cut(s)	557, 717
Eco32I	GATATC	1 cut(s)	928
Eco47I	GGWCC	1 cut(s)	893
Eco57I	CTGAAG	1 cut(s)	992
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	1 cut(s)	1015
FaiI	YATR	9 cut(s)	104, 792, 794, 813, 824, 849, 851, 981, 1013
FaqI	GGGAC	3 cut(s)	104, 122, 488
FatI	CATG	1 cut(s)	1011
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	792
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	7 cut(s)	208, 321, 387, 576, 680, 683, 1016
FokI	GGATG	4 cut(s)	170, 257, 935, 979
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	7 cut(s)	208, 321, 387, 576, 680, 683, 1016
GluI	GCNGC	7 cut(s)	208, 321, 387, 576, 680, 683, 1016
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	3 cut(s)	558, 641, 729
HapII	CCGG	5 cut(s)	32, 228, 538, 555, 704
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	3 cut(s)	218, 224, 266
HpaII	CCGG	5 cut(s)	32, 228, 538, 555, 704
HphI	GGTGA	5 cut(s)	70, 103, 141, 307, 895
Hpy188I	TCNGA	5 cut(s)	223, 265, 292, 527, 904
Hpy188III	TCNNGA	4 cut(s)	338, 436, 479, 496
Hpy99I	CGWCG	5 cut(s)	200, 254, 257, 365, 497
HpyAV	CCTTC	4 cut(s)	763, 874, 883, 994
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	460, 682, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	638, 726, 796
HpyF3I	CTNAG	2 cut(s)	378, 697
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	1015
KpnI	GGTACC	1 cut(s)	1007
KroI	GCCGGC	1 cut(s)	703
KroNI	GCCGGC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	5 cut(s)	180, 357, 498, 540, 781
LguI	GCTCTTC	1 cut(s)	772
LmnI	GCTCC	3 cut(s)	4, 281, 904
Lsp1109I	GCAGC	3 cut(s)	666, 694, 1027
LweI	GCATC	2 cut(s)	447, 957
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	5 cut(s)	182, 359, 500, 542, 783
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	5 cut(s)	180, 357, 498, 540, 781
MboII	GAAGA	5 cut(s)	629, 759, 889, 898, 985
MhlI	GDGCHC	2 cut(s)	9, 909
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	3 cut(s)	568, 832, 943
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	5 cut(s)	190, 315, 335, 900, 975
Mox20I	TGGCCA	1 cut(s)	641
MroNI	GCCGGC	1 cut(s)	703
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	816
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	5 cut(s)	32, 228, 538, 555, 704
MspR9I	CCNGG	2 cut(s)	32, 593
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	3 cut(s)	414, 533, 575
MwoI	GCNNNNNNNGC	3 cut(s)	638, 726, 796
NaeI	GCCGGC	1 cut(s)	705
NciI	CCSGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	792
NdeII	GATC	5 cut(s)	180, 357, 498, 540, 781
NgoMIV	GCCGGC	1 cut(s)	703
NlaIII	CATG	1 cut(s)	1015
NlaIV	GGNNCC	5 cut(s)	6, 553, 728, 894, 1005
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 261
PdiI	GCCGGC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	224, 266
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	209, 322, 388, 577, 681, 684, 1017
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp1406I	AACGTT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	5 cut(s)	6, 553, 728, 894, 1005
PspPI	GGNCC	2 cut(s)	727, 893
PstI	CTGCAG	1 cut(s)	684
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	3 cut(s)	410, 659, 1005
RsaNI	GTAC	3 cut(s)	409, 658, 1004
RseI	CAYNNNNRTG	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	7 cut(s)	208, 321, 387, 576, 680, 683, 1016
Sau3AI	GATC	5 cut(s)	180, 357, 498, 540, 781
Sau96I	GGNCC	2 cut(s)	727, 893
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	32, 593
SduI	GDGCHC	2 cut(s)	9, 909
SfaNI	GCATC	2 cut(s)	447, 957
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	568, 832, 943
SsiI	CCGC	9 cut(s)	205, 208, 274, 318, 321, 387, 412, 575, 707
StyD4I	CCNGG	2 cut(s)	30, 591
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	339, 360, 435, 495, 543
TasI	AATT	3 cut(s)	568, 832, 943
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	4 cut(s)	210, 323, 389, 578
TfiI	GAWTC	2 cut(s)	224, 266
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	937
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	679, 682, 1015
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	745, 800, 809
TspGWI	ACGGA	3 cut(s)	124, 341, 885
TspRI	CASTG	1 cut(s)	937
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	893
XapI	RAATTY	1 cut(s)	832
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.