Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008546.1

Orthogroup ID

OG0016451

Physical Location & Seq

Genomic Coordinates Forward (+)

30444 .. 34934

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008546.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgcttggagatgtagctggtgctggtgcctatgcgctgggtatgatatctgatgccttcagctccctggctttcactgctctggctgttgtagtttgtgctgctggaggtatcgttgtcagatttcctgttttgctgtgtatgctagtgatttcatcaaagtcggttgtctggatgtcagctgttctgttgttggctgtaacgccaccaatgcttctctacaaggataagtcaaggacagcctcaaagatgcaaacttggcaaggttatacacacgtaggtgtggtttccttatcagtttggttttgtcgtgaaacaatctttgaagccttgcaaaggtggaatggaagagctccctctgatggcctactcctaggcttctgtattgtcttgatgggcttgtcttgtgttcctattgtggctctccacttctctcatgtcttgtgcgtaaggggttctattgttctcttggacagtgatggtgcagctgcattagtgctagcgagtgggaagaaggcacttgaatgcaataaaattccagagtgttggaagtctgaaaactcaggaggacgaggtgaagagctattggggagttgggaagaggaggatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.67

Weight (kDa)

5.9

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016451)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0413381 RchiOBHm_Chr5g0056851 RchiOBHm_Chr7g0226991
rosa_multiflora	Rmu_sc0008546.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056330 Rroxscaffold_2G00096570 Rroxscaffold_5G00348720 Rroxscaffold_7G00197630
rosa_samantha	Rh1BG300600 Rh3AG259300 Rh5AG233000 Rh5BG453800 Rh5CG407100 Rh5CG476100
rosa_wichuraiana	Rw5G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	336, 362
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	326, 524
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	6 cut(s)	17, 63, 182, 353, 488, 583
AluI	AGCT	6 cut(s)	17, 63, 182, 353, 488, 583
Alw21I	GWGCWC	1 cut(s)	355
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	101, 485, 488
ApoI	RAATTY	1 cut(s)	534
AspA2I	CCTAGG	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	587
AsuNHI	GCTAGC	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	88, 475, 497
BccI	CCATC	4 cut(s)	356, 388, 473, 602
BciT130I	CCWGG	1 cut(s)	68
BfaI	CTAG	3 cut(s)	146, 374, 500
BisI	GCNGC	3 cut(s)	102, 486, 489
BlnI	CCTAGG	1 cut(s)	373
BlsI	GCNGC	3 cut(s)	103, 487, 490
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	43, 240
BmtI	GCTAGC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	66, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 362
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	66, 373
BseGI	GGATG	2 cut(s)	180, 613
BseLI	CCNNNNNNNGG	2 cut(s)	336, 362
BseMII	CTCAG	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	88, 475, 497
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	336, 362
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	28
BspOI	GCTAGC	1 cut(s)	503
BspQI	GCTCTTC	2 cut(s)	343, 573
BspT107I	GGYRCC	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	66, 373
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	3 cut(s)	343, 573, 594
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	562
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	180, 613
BstHHI	GCGC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 142, 211, 259
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	88, 475, 497
BstXI	CCANNNNNNTGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	180, 613
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 481
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	1 cut(s)	37
CviAII	CATG	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	562
Eam1104I	CTCTTC	3 cut(s)	343, 573, 594
EarI	CTCTTC	3 cut(s)	343, 573, 594
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	1 cut(s)	440
FaiI	YATR	5 cut(s)	33, 44, 143, 270, 438
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	102, 486, 489
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	102, 486, 489
FspBI	CTAG	3 cut(s)	146, 374, 500
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	102, 486, 489
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	587
Hpy188I	TCNGA	4 cut(s)	52, 122, 361, 556
Hpy188III	TCNNGA	5 cut(s)	172, 311, 391, 539, 564
HpyAV	CCTTC	2 cut(s)	67, 508
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	253, 334, 485, 491, 528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 142, 211, 259
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	35
LguI	GCTCTTC	2 cut(s)	343, 573
LmnI	GCTCC	2 cut(s)	68, 358
Lsp1109I	GCAGC	3 cut(s)	88, 475, 497
LweI	GCATC	2 cut(s)	43, 240
MaeI	CTAG	3 cut(s)	146, 374, 500
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	360, 523, 590, 611
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	7 cut(s)	101, 253, 367, 560, 566, 595, 598
MslI	CAYNNNNRTG	2 cut(s)	279, 523
MspA1I	CMGCKG	2 cut(s)	182, 488
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	77, 142, 211, 259
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	279
PciSI	GCTCTTC	2 cut(s)	343, 573
PctI	GAATGC	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	103, 487, 490
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	182, 488
RseI	CAYNNNNRTG	2 cut(s)	279, 523
SacI	GAGCTC	1 cut(s)	355
SapI	GCTCTTC	2 cut(s)	343, 573
SatI	GCNGC	3 cut(s)	102, 486, 489
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	43, 240
SmiMI	CAYNNNNRTG	2 cut(s)	279, 523
Sse9I	AATT	1 cut(s)	534
SspMI	CTAG	3 cut(s)	146, 374, 500
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	279
TasI	AATT	1 cut(s)	534
TscAI	CASTG	2 cut(s)	82, 481
TseI	GCWGC	3 cut(s)	101, 485, 488
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	82, 481
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	534
XmaJI	CCTAGG	1 cut(s)	373
XspI	CTAG	3 cut(s)	146, 374, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.