OTU domain-containing protein DDB_G0284757-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0413381 RchiOBHm_Chr5g0056851 RchiOBHm_Chr7g0226991 |
| rosa_multiflora | Rmu_sc0008546.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00056330 Rroxscaffold_2G00096570 Rroxscaffold_5G00348720 Rroxscaffold_7G00197630 |
| rosa_samantha | Rh1BG300600 Rh3AG259300 Rh5AG233000 Rh5BG453800 Rh5CG407100 Rh5CG476100 |
| rosa_wichuraiana | Rw5G026060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 100 |
| AluBI | AGCT | 5 cut(s) | 17, 28, 109, 184, 227 |
| AluI | AGCT | 5 cut(s) | 17, 28, 109, 184, 227 |
| Alw21I | GWGCWC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 1 cut(s) | 184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 37 |
| BanII | GRGCYC | 1 cut(s) | 30 |
| BauI | CACGAG | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 1 cut(s) | 30 |
| BbvI | GCAGC | 1 cut(s) | 171 |
| BccI | CCATC | 1 cut(s) | 194 |
| BclI | TGATCA | 1 cut(s) | 229 |
| BisI | GCNGC | 1 cut(s) | 185 |
| BlsI | GCNGC | 1 cut(s) | 186 |
| BpmI | CTGGAG | 1 cut(s) | 89 |
| BsaBI | GATNNNNATC | 1 cut(s) | 204 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 87, 93, 117, 123 |
| Bse1I | ACTGG | 1 cut(s) | 211 |
| Bse8I | GATNNNNATC | 1 cut(s) | 204 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseJI | GATNNNNATC | 1 cut(s) | 204 |
| BseMII | CTCAG | 3 cut(s) | 33, 147, 171 |
| BseNI | ACTGG | 1 cut(s) | 211 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseXI | GCAGC | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| Bsp143I | GATC | 4 cut(s) | 124, 131, 172, 229 |
| BspCNI | CTCAG | 3 cut(s) | 34, 148, 172 |
| BsrI | ACTGG | 1 cut(s) | 211 |
| BssMI | GATC | 4 cut(s) | 124, 131, 172, 229 |
| BssSI | CACGAG | 1 cut(s) | 69 |
| Bst2BI | CACGAG | 1 cut(s) | 69 |
| Bst4CI | ACNGT | 1 cut(s) | 119 |
| BstDEI | CTNAG | 3 cut(s) | 42, 156, 180 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstKTI | GATC | 4 cut(s) | 127, 134, 175, 232 |
| BstMBI | GATC | 4 cut(s) | 124, 131, 172, 229 |
| BstNSI | RCATGY | 1 cut(s) | 266 |
| BstV1I | GCAGC | 1 cut(s) | 171 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| BtsIMutI | CAGTG | 1 cut(s) | 115 |
| CviAII | CATG | 2 cut(s) | 257, 263 |
| CviJI | RGCY | 8 cut(s) | 17, 28, 54, 77, 109, 164, 184, 227 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 28, 54, 77, 109, 164, 184, 227 |
| DdeI | CTNAG | 3 cut(s) | 42, 156, 180 |
| DpnI | GATC | 4 cut(s) | 126, 133, 174, 231 |
| DpnII | GATC | 4 cut(s) | 124, 131, 172, 229 |
| Ecl136II | GAGCTC | 1 cut(s) | 28 |
| Eco24I | GRGCYC | 1 cut(s) | 30 |
| Eco53kI | GAGCTC | 1 cut(s) | 28 |
| EcoICRI | GAGCTC | 1 cut(s) | 28 |
| EcoT38I | GRGCYC | 1 cut(s) | 30 |
| FaeI | CATG | 2 cut(s) | 260, 266 |
| FaiI | YATR | 9 cut(s) | 22, 24, 48, 50, 57, 149, 171, 258, 264 |
| FatI | CATG | 2 cut(s) | 256, 262 |
| FauNDI | CATATG | 1 cut(s) | 22 |
| FbaI | TGATCA | 1 cut(s) | 229 |
| FblI | GTMKAC | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 1 cut(s) | 185 |
| FokI | GGATG | 1 cut(s) | 209 |
| FriOI | GRGCYC | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 1 cut(s) | 185 |
| GluI | GCNGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 1 cut(s) | 89 |
| Hin1II | CATG | 2 cut(s) | 260, 266 |
| HincII | GTYRAC | 2 cut(s) | 101, 141 |
| HindII | GTYRAC | 2 cut(s) | 101, 141 |
| HinfI | GANTC | 3 cut(s) | 33, 65, 102 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 141 |
| Hpy188I | TCNGA | 4 cut(s) | 32, 43, 131, 181 |
| Hpy188III | TCNNGA | 3 cut(s) | 69, 81, 248 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 141 |
| Hpy99I | CGWCG | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 1 cut(s) | 119 |
| HpyCH4IV | ACGT | 2 cut(s) | 97, 137 |
| HpyCH4V | TGCA | 1 cut(s) | 187 |
| HpyF3I | CTNAG | 3 cut(s) | 42, 156, 180 |
| HpySE526I | ACGT | 2 cut(s) | 97, 137 |
| Hsp92II | CATG | 2 cut(s) | 260, 266 |
| Ksp22I | TGATCA | 1 cut(s) | 229 |
| Kzo9I | GATC | 4 cut(s) | 124, 131, 172, 229 |
| LmnI | GCTCC | 3 cut(s) | 22, 33, 114 |
| LpnPI | CCDG | 3 cut(s) | 119, 224, 261 |
| Lsp1109I | GCAGC | 1 cut(s) | 171 |
| MaeII | ACGT | 2 cut(s) | 97, 137 |
| MalI | GATC | 4 cut(s) | 126, 133, 174, 231 |
| MboI | GATC | 4 cut(s) | 124, 131, 172, 229 |
| MboII | GAAGA | 1 cut(s) | 17 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MluCI | AATT | 1 cut(s) | 189 |
| MlyI | GAGTC | 2 cut(s) | 59, 96 |
| MnlI | CCTC | 3 cut(s) | 122, 154, 187 |
| MroXI | GAANNNNTTC | 1 cut(s) | 37 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| NdeI | CATATG | 1 cut(s) | 22 |
| NdeII | GATC | 4 cut(s) | 124, 131, 172, 229 |
| NlaIII | CATG | 2 cut(s) | 260, 266 |
| NspI | RCATGY | 1 cut(s) | 266 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 214 |
| PdmI | GAANNNNTTC | 1 cut(s) | 37 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PkrI | GCNGC | 1 cut(s) | 186 |
| PleI | GAGTC | 2 cut(s) | 59, 96 |
| PpsI | GAGTC | 2 cut(s) | 59, 96 |
| Psp124BI | GAGCTC | 1 cut(s) | 30 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SacI | GAGCTC | 1 cut(s) | 30 |
| SalI | GTCGAC | 1 cut(s) | 99 |
| SatI | GCNGC | 1 cut(s) | 185 |
| Sau3AI | GATC | 4 cut(s) | 124, 131, 172, 229 |
| SchI | GAGTC | 2 cut(s) | 59, 96 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SetI | ASST | 9 cut(s) | 19, 30, 100, 111, 140, 146, 170, 186, 229 |
| SgeI | CNNG | 8 cut(s) | 81, 83, 93, 118, 223, 230, 260, 269 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| Sse9I | AATT | 1 cut(s) | 189 |
| SstI | GAGCTC | 1 cut(s) | 30 |
| TaaI | ACNGT | 1 cut(s) | 119 |
| TaiI | ACGT | 2 cut(s) | 100, 140 |
| TaqI | TCGA | 2 cut(s) | 100, 217 |
| TasI | AATT | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| TscAI | CASTG | 1 cut(s) | 122 |
| TseI | GCWGC | 1 cut(s) | 184 |
| TspRI | CASTG | 1 cut(s) | 122 |
| XceI | RCATGY | 1 cut(s) | 266 |
| XmiI | GTMKAC | 1 cut(s) | 100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 37 |