Rh5AG233000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016451
Physical Location & Seq
Reverse (-)
28130173 .. 28138159
7987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG233000.1

Sequence Viewer

Length: 660 bp
ATGATGCCTACAATATATGCGCTTGCTTCACAGGATGTTGCGTCTTATGGACTCATGAAGAACAATACTTGGGATGTGCTTTGGTCGGAATGGTTCCAATCATGGCTAGAGATGGAAAGAACACCGGATGTCTGGGTGCCCAGATCAGTGGGGTGGTTGGGTTGTACTCAGACTCCAATCGATGCCAAGTTTTTGATAACTTCAGTGGTAAGGGTGACGGCGAGAGTACCTATAATTTGGCCAGAGTGGGTTGGACGATGGCTGTTGGGCTGGCCAGAATCTATGGCGGAGGAGATGCAGAAGGGTGTCGACTGTCCGACCTCTAGTGAAAGGGATAAGTCAAGGACAGCCTCAAAGATGCAAACTTGGCAAGGTTATACACACGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAAAGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGGAAGAAGATCCAGGTTGCTATTCAAGGGCATCTAACTCTGTTTTTGAGCCTGTGGTAGATGTACAAATGAATGTGAGTAACATGAAAGTGCTATTCAAGGGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.84

Weight (kDa)

5.41

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 2 cut(s) 239, 272
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 3 cut(s) 166, 228, 615
AfiI CCNNNNNNNGG 4 cut(s) 444, 470, 481, 526
AgsI TTSAA 3 cut(s) 434, 576, 649
AjnI CCWGG 2 cut(s) 480, 562
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 1 cut(s) 461
AluI AGCT 1 cut(s) 461
Alw21I GWGCWC 1 cut(s) 463
AlwI GGATC 1 cut(s) 554
AoxI GGCC 3 cut(s) 239, 272, 472
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 2 cut(s) 241, 274
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 463
BccI CCATC 4 cut(s) 106, 252, 464, 496
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 482, 564
BfaI CTAG 2 cut(s) 107, 324
BfuAI ACCTGC 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 482, 564
BmiI GGNNCC 2 cut(s) 95, 138
BmrFI CCNGG 2 cut(s) 482, 564
BmsI GCATC 4 cut(s) 172, 285, 348, 590
Bsa29I ATCGAT 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 4 cut(s) 444, 470, 481, 526
BseBI CCWGG 2 cut(s) 482, 564
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 3 cut(s) 40, 79, 133
BseLI CCNNNNNNNGG 4 cut(s) 444, 470, 481, 526
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 141
BshFI GGCC 3 cut(s) 241, 274, 474
BshNI GGYRCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 4 cut(s) 444, 470, 481, 526
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 3 cut(s) 241, 274, 474
Bsp1286I GDGCHC 2 cut(s) 141, 463
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 2 cut(s) 143, 559
BspACI CCGC 1 cut(s) 287
BspANI GGCC 3 cut(s) 241, 274, 474
BspCNI CTCAG 1 cut(s) 181
BspDI ATCGAT 1 cut(s) 180
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 95, 138
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 143, 559
Bst2UI CCWGG 2 cut(s) 482, 564
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 451
BstAUI TGTACA 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 24, 272
BstDEI CTNAG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 442
BstF5I GGATG 3 cut(s) 40, 79, 133
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 146, 562
BstMBI GATC 2 cut(s) 143, 559
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 2 cut(s) 482, 564
BstSCI CCNGG 2 cut(s) 480, 562
BstSLI GKGCMC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 3 cut(s) 241, 274, 474
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 3 cut(s) 40, 79, 133
BtsIMutI CAGTG 2 cut(s) 153, 210
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 24, 272
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 30
Csp6I GTAC 3 cut(s) 165, 227, 614
CviAII CATG 4 cut(s) 55, 102, 545, 634
CviQI GTAC 3 cut(s) 165, 227, 614
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 145, 561
DpnII GATC 2 cut(s) 143, 559
EaeI YGGCCR 2 cut(s) 239, 272
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 461
EcoNI CCTNNNNNAGG 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 480, 562
EcoT38I GRGCYC 1 cut(s) 463
FaeI CATG 4 cut(s) 58, 105, 548, 637
FaqI GGGAC 1 cut(s) 503
FatI CATG 4 cut(s) 54, 101, 544, 633
FblI GTMKAC 1 cut(s) 309
FokI GGATG 3 cut(s) 47, 86, 140
FriOI GRGCYC 1 cut(s) 463
FspBI CTAG 2 cut(s) 107, 324
GlaI GCGC 1 cut(s) 21
HaeIII GGCC 3 cut(s) 241, 274, 474
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 58, 105, 548, 637
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 51, 172, 278
HpaII CCGG 1 cut(s) 125
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 4 cut(s) 88, 171, 318, 469
Hpy188III TCNNGA 3 cut(s) 55, 419, 499
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 298, 361, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 4 cut(s) 58, 105, 548, 637
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 143, 559
LguI GCTCTTC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 466
LweI GCATC 4 cut(s) 172, 285, 348, 590
MaeI CTAG 2 cut(s) 107, 324
MaeIII GTNAC 2 cut(s) 214, 629
MalI GATC 2 cut(s) 145, 561
MboI GATC 2 cut(s) 143, 559
MboII GAAGA 4 cut(s) 70, 468, 566, 569
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 141, 463
MlsI TGGCCA 2 cut(s) 241, 274
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 2 cut(s) 241, 274
MlyI GAGTC 2 cut(s) 45, 166
MmeI TCCRAC 3 cut(s) 66, 232, 341
MnlI CCTC 4 cut(s) 283, 331, 361, 475
Mox20I TGGCCA 2 cut(s) 241, 274
MscI TGGCCA 2 cut(s) 241, 274
MslI CAYNNNNRTG 2 cut(s) 387, 638
Msp20I TGGCCA 2 cut(s) 241, 274
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 482, 564
MvaI CCWGG 2 cut(s) 482, 564
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 2 cut(s) 143, 559
NlaIII CATG 4 cut(s) 58, 105, 548, 637
NlaIV GGNNCC 2 cut(s) 95, 138
NmuCI GTSAC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 387
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 278
PleI GAGTC 2 cut(s) 45, 166
PpsI GAGTC 2 cut(s) 45, 166
Psp124BI GAGCTC 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 480, 562
PspGI CCWGG 2 cut(s) 480, 562
PspN4I GGNNCC 2 cut(s) 95, 138
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 166, 228, 615
RsaNI GTAC 3 cut(s) 165, 227, 614
RseI CAYNNNNRTG 2 cut(s) 387, 638
SacI GAGCTC 1 cut(s) 463
SalI GTCGAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 451
Sau3AI GATC 2 cut(s) 143, 559
SchI GAGTC 2 cut(s) 45, 166
ScrFI CCNGG 2 cut(s) 482, 564
SduI GDGCHC 2 cut(s) 141, 463
SetI ASST 7 cut(s) 232, 323, 376, 391, 449, 463, 568
SfaNI GCATC 4 cut(s) 172, 285, 348, 590
SmiMI CAYNNNNRTG 2 cut(s) 387, 638
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 107, 324
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 480, 562
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 180, 309
TasI AATT 1 cut(s) 234
TatI WGTACW 2 cut(s) 164, 613
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 2 cut(s) 153, 210
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 71, 635, 650
TspRI CASTG 2 cut(s) 153, 210
XagI CCTNNNNNAGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 107, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.