Rroxscaffold_7G00197630

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016451
Physical Location & Seq
Forward (+)
41967119 .. 41975126
8008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197630.1

Sequence Viewer

Length: 447 bp
ATGGCTTCTCCAAAAGAGCCCATCATCATCTTCGTAACCGAGCGTCGACACTCCGGCTCGGCGTTGGTAGTCCGACCCTCCTCCCCTCACTCCCCTCCCGCCGGCACCCCAACCTCGGGTGCCCGGCGCCGCATCCGGATCGCTCCCGGATCCGAGCAGCAGTGTCGTGGAGCTGGTAGCCGAGCAGTGCCTCACACTCCGATGGGTGCCCGAGCACTTTTTTTTTTTGTTAAGCTCACCGTCGCCGCTACGGCCGCGCCGCCGTGCAAAGGCCACCACGACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGGTGGTCGGAGGAGGAAGAAATGCACAGTTGAAGTTCAAGGCCCGATTTCCCGGCCGTGCAAGGGCTCTCGCCCAATGGTGAAGATTCGCTGGGAGTTTGCATGGAAGAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

148

Amino Acids

16.03

Weight (kDa)

11.53

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB1I GGYRCC 4 cut(s) 104, 119, 126, 206
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 5 cut(s) 99, 130, 246, 255, 260
AclWI GGATC 3 cut(s) 144, 146, 157
AcoI YGGCCR 2 cut(s) 252, 383
AcyI GRCGYC 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 101, 115, 116, 269, 392
AgsI TTSAA 2 cut(s) 362, 368
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 3 cut(s) 173, 235, 305
AluI AGCT 3 cut(s) 173, 235, 305
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 3 cut(s) 144, 146, 157
Ama87I CYCGRG 2 cut(s) 115, 210
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 4 cut(s) 252, 271, 370, 383
ApeKI GCWGC 1 cut(s) 157
AspLEI GCGC 3 cut(s) 129, 259, 289
AspS9I GGNCC 2 cut(s) 293, 371
AsuC2I CCSGG 3 cut(s) 124, 147, 382
AsuHPI GGTGA 3 cut(s) 229, 334, 421
AvaI CYCGRG 2 cut(s) 115, 210
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 2 cut(s) 124, 211
BamHI GGATCC 1 cut(s) 149
BanI GGYRCC 4 cut(s) 104, 119, 126, 206
BanII GRGCYC 2 cut(s) 21, 398
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 29, 196
BceAI ACGGC 3 cut(s) 247, 267, 370
BcgI CGANNNNNNTGC 4 cut(s) 121, 146, 155, 180
BcnI CCSGG 3 cut(s) 124, 147, 382
BfoI RGCGCY 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 5 cut(s) 130, 158, 246, 255, 260
BlsI GCNGC 5 cut(s) 131, 159, 247, 256, 261
Bme1390I CCNGG 3 cut(s) 124, 147, 382
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 2 cut(s) 115, 210
BmgT120I GGNCC 2 cut(s) 293, 371
BmiI GGNNCC 5 cut(s) 106, 121, 128, 151, 208
BmrFI CCNGG 3 cut(s) 124, 147, 382
BmsI GCATC 1 cut(s) 141
BpuMI CCSGG 3 cut(s) 124, 147, 382
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 115, 116, 269, 392
Bse118I RCCGGY 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 5 cut(s) 101, 115, 116, 269, 392
BseRI GAGGAG 2 cut(s) 70, 355
BseSI GKGCMC 2 cut(s) 124, 211
BseX3I CGGCCG 2 cut(s) 252, 383
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 255, 386
BshFI GGCC 4 cut(s) 254, 273, 372, 385
BshNI GGYRCC 4 cut(s) 104, 119, 126, 206
BsiEI CGRYCG 2 cut(s) 255, 386
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 2 cut(s) 115, 210
BsiSI CCGG 6 cut(s) 54, 102, 124, 136, 147, 382
BslI CCNNNNNNNGG 5 cut(s) 101, 115, 116, 269, 392
BsnI GGCC 4 cut(s) 254, 273, 372, 385
BsoBI CYCGRG 2 cut(s) 115, 210
Bsp1286I GDGCHC 5 cut(s) 21, 124, 211, 217, 398
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 138, 149
BspACI CCGC 5 cut(s) 99, 130, 246, 255, 260
BspANI GGCC 4 cut(s) 254, 273, 372, 385
BspEI TCCGGA 1 cut(s) 135
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 5 cut(s) 106, 121, 128, 151, 208
BspPI GGATC 3 cut(s) 144, 146, 157
BspT107I GGYRCC 4 cut(s) 104, 119, 126, 206
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 138, 149
BssNI GRCGYC 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 241, 284, 358
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 103
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 3 cut(s) 129, 259, 289
BstKTI GATC 2 cut(s) 141, 152
BstMBI GATC 2 cut(s) 138, 149
BstMCI CGRYCG 2 cut(s) 255, 386
BstMWI GCNNNNNNNGC 2 cut(s) 251, 254
BstSCI CCNGG 3 cut(s) 122, 145, 380
BstSLI GKGCMC 2 cut(s) 124, 211
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BstZI CGGCCG 2 cut(s) 252, 383
BsuRI GGCC 4 cut(s) 254, 273, 372, 385
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 2 cut(s) 167, 192
BtsIMutI CAGTG 3 cut(s) 167, 192, 289
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 3 cut(s) 129, 259, 289
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 293, 371
CseI GACGC 1 cut(s) 32
CviAII CATG 1 cut(s) 432
DinI GGCGCC 1 cut(s) 128
DpnI GATC 2 cut(s) 140, 151
DpnII GATC 2 cut(s) 138, 149
EaeI YGGCCR 2 cut(s) 252, 383
EagI CGGCCG 2 cut(s) 252, 383
EclXI CGGCCG 2 cut(s) 252, 383
Eco24I GRGCYC 2 cut(s) 21, 398
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 2 cut(s) 252, 383
Eco88I CYCGRG 2 cut(s) 115, 210
EcoT38I GRGCYC 2 cut(s) 21, 398
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
FaeI CATG 1 cut(s) 435
FaiI YATR 2 cut(s) 298, 433
FatI CATG 1 cut(s) 431
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 130, 158, 246, 255, 260
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 2 cut(s) 21, 398
Fsp4HI GCNGC 5 cut(s) 130, 158, 246, 255, 260
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 3 cut(s) 128, 258, 288
GluI GCNGC 5 cut(s) 130, 158, 246, 255, 260
GsaI CCCAGC 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 4 cut(s) 254, 273, 372, 385
HapII CCGG 6 cut(s) 54, 102, 124, 136, 147, 382
HgaI GACGC 1 cut(s) 32
HhaI GCGC 3 cut(s) 129, 259, 289
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 1 cut(s) 435
Hin6I GCGC 3 cut(s) 127, 257, 287
HinP1I GCGC 3 cut(s) 127, 257, 287
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HinfI GANTC 1 cut(s) 415
HpaII CCGG 6 cut(s) 54, 102, 124, 136, 147, 382
HphI GGTGA 3 cut(s) 229, 334, 421
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 74, 154, 201, 339
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 47
Hpy99I CGWCG 2 cut(s) 48, 245
HpyCH4III ACNGT 3 cut(s) 241, 284, 358
HpyCH4V TGCA 4 cut(s) 267, 354, 390, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 254
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 1 cut(s) 435
HspAI GCGC 3 cut(s) 127, 257, 287
KasI GGCGCC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 135
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 138, 149
LmnI GCTCC 2 cut(s) 148, 170
LpnPI CCDG 8 cut(s) 67, 115, 137, 149, 159, 160, 395, 406
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 140, 151
MboI GATC 2 cut(s) 138, 149
MboII GAAGA 5 cut(s) 22, 324, 337, 358, 424
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 5 cut(s) 21, 124, 211, 217, 398
Mly113I GGCGCC 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 97, 317
MnlI CCTC 8 cut(s) 88, 91, 96, 105, 124, 201, 333, 336
MroI TCCGGA 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 200, 282
MspI CCGG 6 cut(s) 54, 102, 124, 136, 147, 382
MspR9I CCNGG 3 cut(s) 124, 147, 382
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 251, 254
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 127
NciI CCSGG 3 cut(s) 124, 147, 382
NdeII GATC 2 cut(s) 138, 149
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 435
NlaIV GGNNCC 5 cut(s) 106, 121, 128, 151, 208
NmeAIII GCCGAG 2 cut(s) 38, 206
NsbI TGCGCA 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 5 cut(s) 131, 159, 247, 256, 261
PluTI GGCGCC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 420
PspN4I GGNNCC 5 cut(s) 106, 121, 128, 151, 208
PspPI GGNCC 2 cut(s) 293, 371
PsuI RGATCY 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 200, 282
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 5 cut(s) 130, 158, 246, 255, 260
Sau3AI GATC 2 cut(s) 138, 149
Sau96I GGNCC 2 cut(s) 293, 371
ScrFI CCNGG 3 cut(s) 124, 147, 382
SduI GDGCHC 5 cut(s) 21, 124, 211, 217, 398
SetI ASST 4 cut(s) 116, 175, 237, 307
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 128
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 200, 282
SsiI CCGC 5 cut(s) 99, 130, 246, 255, 260
SspDI GGCGCC 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 122, 145, 380
TaaI ACNGT 3 cut(s) 241, 284, 358
TaqI TCGA 1 cut(s) 46
TauI GCSGC 4 cut(s) 132, 248, 257, 262
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 3 cut(s) 167, 192, 289
TseI GCWGC 1 cut(s) 157
TspRI CASTG 3 cut(s) 167, 192, 289
VpaK11BI GGWCC 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.