Rroxscaffold_5G00348720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016451
Physical Location & Seq
Forward (+)
21128536 .. 21141470
12935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348720.1

Sequence Viewer

Length: 666 bp
ATGGCGCTGGTTACTGTCTTTGTGACAAGTAATGCTGAAGCCCGCATCCTAATCGCTACACTTAGAGGCGTGTGGGTATATAACGGGAGTACTTTAGCTAAGGAGGCTATCACCCAAGCCTGGGAGGCTCATTCGCCGCGCCGCCGTGCAAGGCCACCACAGACAGGTGTGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGATGGCCGGATGAGGAAGATATGGCCAACTGAAAATTGGGGGCGATTTCCCGAGCTGCTGCACGAAGAGAAACGACTTCTTGGGCTATGGAGTCTTACGTTGAGGGACGATTCCGATTTGGCCGGAAGAACGGCGGTGGATCCAAGCCGGCATGAATTGATATACAAAGAGAATAGAAAAGCAATTGAAGATGTTGCCAAGAGAAATGACATGGGTTCTGCTAGCCTCGGTAGCTTTGTTTGTATCTACATGCAGAAGGAAAAATGGCTGAACATAGAGACCGAACACCACAAGTATAGAGCAAGTCTACAGTCATTCAATGACAAGATGAAAACCTACAAAGGGATGATCACCCCACCGAAAACGACCCAAGAACGGCGAAAAGAAGAAGCGAGAAAGTCGAAGAGAATGAAGGACTTAATAGGCTCGTTGGAAGAAGCAACAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.44

Weight (kDa)

9.85

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 520
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 43, 137, 142, 347
AclWI GGATC 2 cut(s) 347, 360
AcoI YGGCCR 3 cut(s) 217, 236, 333
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 5 cut(s) 120, 121, 164, 555, 588
AgsI TTSAA 2 cut(s) 401, 532
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 4 cut(s) 98, 188, 268, 447
AluI AGCT 4 cut(s) 98, 188, 268, 447
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 347, 360
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 152, 217, 236, 333
ApeKI GCWGC 2 cut(s) 268, 271
AspLEI GCGC 2 cut(s) 7, 141
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 103, 217, 556
AsuNHI GCTAGC 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 238
BamHI GGATCC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 255, 258
BccI CCATC 1 cut(s) 209
BceAI ACGGC 3 cut(s) 129, 360, 605
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 4 cut(s) 137, 142, 269, 272
BlsI GCNGC 4 cut(s) 138, 143, 270, 273
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 120, 439
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 121, 164, 555, 588
Bse118I RCCGGY 1 cut(s) 360
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 120, 439
BseGI GGATG 3 cut(s) 45, 228, 564
BseLI CCNNNNNNNGG 5 cut(s) 120, 121, 164, 555, 588
BseXI GCAGC 2 cut(s) 255, 258
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 154, 219, 238, 335
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 220, 336, 361
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 5 cut(s) 120, 121, 164, 555, 588
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 4 cut(s) 154, 219, 238, 335
Bso31I GGTCTC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 2 cut(s) 352, 561
BspACI CCGC 4 cut(s) 43, 137, 142, 347
BspANI GGCC 4 cut(s) 154, 219, 238, 335
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 354
BspOI GCTAGC 1 cut(s) 438
BspPI GGATC 2 cut(s) 347, 360
BspTNI GGTCTC 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 120, 439
BssMI GATC 2 cut(s) 352, 561
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 16, 525
Bst6I CTCTTC 2 cut(s) 273, 611
BstC8I GCNNGC 3 cut(s) 43, 362, 436
BstDEI CTNAG 2 cut(s) 62, 99
BstF5I GGATG 3 cut(s) 45, 228, 564
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 141
BstKTI GATC 2 cut(s) 355, 564
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 2 cut(s) 352, 561
BstMWI GCNNNNNNNGC 3 cut(s) 104, 125, 444
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 521
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 255, 258
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 4 cut(s) 154, 219, 238, 335
BtsCI GGATG 3 cut(s) 45, 228, 564
Cac8I GCNNGC 3 cut(s) 43, 362, 436
CfoI GCGC 2 cut(s) 7, 141
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 365, 424, 463
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 62, 99
DpnI GATC 2 cut(s) 354, 563
DpnII GATC 2 cut(s) 352, 561
EaeI YGGCCR 3 cut(s) 217, 236, 333
Eam1104I CTCTTC 2 cut(s) 273, 611
EarI CTCTTC 2 cut(s) 273, 611
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 3 cut(s) 368, 427, 466
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 364, 423, 462
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 137, 142, 269, 272
FokI GGATG 3 cut(s) 32, 235, 571
Fsp4HI GCNGC 4 cut(s) 137, 142, 269, 272
FspBI CTAG 1 cut(s) 435
GlaI GCGC 2 cut(s) 6, 140
GluI GCNGC 4 cut(s) 137, 142, 269, 272
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 154, 219, 238, 335
HapII CCGG 3 cut(s) 220, 336, 361
HhaI GCGC 2 cut(s) 7, 141
Hin1II CATG 3 cut(s) 368, 427, 466
Hin6I GCGC 2 cut(s) 5, 139
HinP1I GCGC 2 cut(s) 5, 139
HinfI GANTC 2 cut(s) 304, 323
HpaII CCGG 3 cut(s) 220, 336, 361
HphI GGTGA 3 cut(s) 103, 217, 556
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 463, 619
HpyCH4III ACNGT 2 cut(s) 16, 525
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 149, 172, 274, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 125, 444
HpyF3I CTNAG 2 cut(s) 62, 99
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 3 cut(s) 368, 427, 466
HspAI GCGC 2 cut(s) 5, 139
KroI GCCGGC 1 cut(s) 360
KroNI GCCGGC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 2 cut(s) 352, 561
LpnPI CCDG 6 cut(s) 106, 133, 150, 233, 349, 374
Lsp1109I GCAGC 2 cut(s) 255, 258
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 10, 22
MalI GATC 2 cut(s) 354, 563
MboI GATC 2 cut(s) 352, 561
MboII GAAGA 9 cut(s) 207, 220, 241, 290, 351, 413, 611, 628, 659
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 3 cut(s) 247, 368, 396
MluNI TGGCCA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 6 cut(s) 59, 97, 118, 219, 309, 449
Mox20I TGGCCA 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 238
MspI CCGG 3 cut(s) 220, 336, 361
MspR9I CCNGG 1 cut(s) 121
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 104, 125, 444
NaeI GCCGGC 1 cut(s) 362
NdeII GATC 2 cut(s) 352, 561
NgoMIV GCCGGC 1 cut(s) 360
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 3 cut(s) 368, 427, 466
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 466
PdiI GCCGGC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 4 cut(s) 138, 143, 270, 273
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 4 cut(s) 137, 142, 269, 272
Sau3AI GATC 2 cut(s) 352, 561
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 121
SetI ASST 7 cut(s) 100, 169, 190, 270, 314, 449, 551
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 176
Sse9I AATT 3 cut(s) 247, 368, 396
SsiI CCGC 4 cut(s) 43, 137, 142, 347
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 16, 525
TaiI ACGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 614, 661
TaqII GACCGA 1 cut(s) 509
TasI AATT 3 cut(s) 247, 368, 396
TatI WGTACW 1 cut(s) 89
TauI GCSGC 2 cut(s) 139, 144
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 268, 271
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 381, 557, 638
VpaK11BI GGWCC 1 cut(s) 176
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.