Rw5G026060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016451
Physical Location & Seq
Forward (+)
37403884 .. 37405009
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026060.1

Sequence Viewer

Length: 357 bp
ATGCAAACTTGGCAAGGTTGTACACACGCAGGTGTGGTTTCCTTATCAGTTTGGTTTTGTCGTGAAACAATCTTTGAAGCCTTGCAAAGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGGAAGAAGATCCAGGTTGCTATTCAAGGGCATCTAATTCTGTTTTTGAGCCTGTGGTAGATGTACAAATGAATGTGAGTAACATGAAAGTGTTATATTATATAGTCTTTTCTTTTCTAGTATATTGCCAACTGGTAGTAGTAATAGGACGTCATATAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.22

Weight (kDa)

6.01

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
AatII GACGTC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 2 cut(s) 22, 258
AfiI CCNNNNNNNGG 4 cut(s) 87, 113, 124, 169
AgsI TTSAA 2 cut(s) 77, 219
AjnI CCWGG 2 cut(s) 123, 205
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 106
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 2 cut(s) 107, 139
BciT130I CCWGG 2 cut(s) 125, 207
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 125, 207
BmrFI CCNGG 2 cut(s) 125, 207
BmsI GCATC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 113, 124, 169
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 125, 207
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 4 cut(s) 87, 113, 124, 169
BseNI ACTGG 1 cut(s) 330
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 106
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 87, 113, 124, 169
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 106
Bsp1407I TGTACA 2 cut(s) 20, 256
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 94
BsrGI TGTACA 2 cut(s) 20, 256
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 125, 207
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 343
BstAUI TGTACA 2 cut(s) 20, 256
BstENI CCTNNNNNAGG 1 cut(s) 85
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 125, 207
BstSCI CCNGG 2 cut(s) 123, 205
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 117
BveI ACCTGC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 21, 257
CviAII CATG 2 cut(s) 188, 277
CviJI RGCY 8 cut(s) 80, 104, 117, 129, 150, 155, 173, 244
CviKI_1 RGCY 8 cut(s) 80, 104, 117, 129, 150, 155, 173, 244
CviQI GTAC 2 cut(s) 21, 257
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 123, 205
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 191, 280
FaiI YATR 8 cut(s) 189, 278, 289, 294, 296, 316, 348, 350
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 187, 276
FriOI GRGCYC 1 cut(s) 106
FspBI CTAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 2 cut(s) 191, 280
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 62, 142
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 4, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 2 cut(s) 191, 280
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 15, 110, 137, 192, 219, 258, 311
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 111, 209, 212
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 229
MnlI CCTC 1 cut(s) 118
MslI CAYNNNNRTG 2 cut(s) 30, 281
MspR9I CCNGG 2 cut(s) 125, 207
MvaI CCWGG 2 cut(s) 125, 207
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 191, 280
OliI CACNNNNGTG 1 cut(s) 30
PaqCI CACCTGC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 123, 205
PspGI CCWGG 2 cut(s) 123, 205
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 2 cut(s) 22, 258
RsaNI GTAC 2 cut(s) 21, 257
RseI CAYNNNNRTG 2 cut(s) 30, 281
SacI GAGCTC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 125, 207
SduI GDGCHC 1 cut(s) 106
SetI ASST 6 cut(s) 19, 34, 92, 106, 211, 346
SfaNI GCATC 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 30, 281
Sse9I AATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 123, 205
TaiI ACGT 1 cut(s) 346
TasI AATT 1 cut(s) 229
TatI WGTACW 2 cut(s) 20, 256
TspDTI ATGAA 2 cut(s) 278, 293
XagI CCTNNNNNAGG 1 cut(s) 85
XspI CTAG 1 cut(s) 311
ZraI GACGTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.