Rroxscaffold_1G00056330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016451
Physical Location & Seq
Forward (+)
78104382 .. 78113315
8934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056330.1

Sequence Viewer

Length: 432 bp
ATGAGTATTAATCTCCCTATCCGTTTTTGTAAAAAAGATTTGATCAAGGAGGCTAACATGAATGACGAGTTAGACCCAACCCATAAGATTGACTCACGAGTGGCTTCGGGAACTCTCCATTTACGTCGACTCCAGCTCCTCCACTGTTGCGATCTCCGATCAACGTCAACCTCCATAGAAACTGAGTTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGATGATGGAAATCGCCAGCTCACCGCCGCCGTTACAGGCGCGCGCGCCATTCAAGGCCACCACGACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGATGGCCGGAGGAGGAAGATATGGCCAACTGAAAATTTTAGGCGATTTCCCGAGCTGCTCCAGGTTGGACTTCCCAACACATTAATTGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.12

Weight (kDa)

6.96

Isoelectric Point (pI)

61.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 294
AccI GTMKAC 1 cut(s) 127
AccII CGCG 3 cut(s) 263, 265, 267
AciI CCGC 2 cut(s) 246, 249
AcoI YGGCCR 2 cut(s) 340, 359
AcsI RAATTY 1 cut(s) 370
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 396
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 5 cut(s) 136, 211, 241, 311, 391
AluI AGCT 5 cut(s) 136, 211, 241, 311, 391
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 3 cut(s) 277, 340, 359
ApeKI GCWGC 2 cut(s) 211, 391
ApoI RAATTY 1 cut(s) 370
AseI ATTAAT 2 cut(s) 9, 419
AspLEI GCGC 5 cut(s) 263, 265, 267, 269, 295
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 235, 340
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 361
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 198, 378
BccI CCATC 2 cut(s) 221, 332
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 398
BclI TGATCA 1 cut(s) 42
BisI GCNGC 3 cut(s) 212, 249, 392
BlsI GCNGC 3 cut(s) 213, 250, 393
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 398
BpmI CTGGAG 2 cut(s) 116, 380
BsaBI GATNNNNATC 1 cut(s) 231
BsaXI ACNNNNNCTCC 4 cut(s) 114, 120, 144, 150
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 231
BseMII CTCAG 2 cut(s) 174, 198
BsePI GCGCGC 3 cut(s) 261, 263, 265
BseRI GAGGAG 2 cut(s) 128, 361
BseXI GCAGC 2 cut(s) 198, 378
Bsh1236I CGCG 3 cut(s) 263, 265, 267
BshFI GGCC 3 cut(s) 279, 342, 361
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 343
BsnI GGCC 3 cut(s) 279, 342, 361
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 4 cut(s) 42, 151, 158, 199
BspACI CCGC 2 cut(s) 246, 249
BspANI GGCC 3 cut(s) 279, 342, 361
BspCNI CTCAG 2 cut(s) 175, 199
BspFNI CGCG 3 cut(s) 263, 265, 267
BssHII GCGCGC 3 cut(s) 261, 263, 265
BssMI GATC 4 cut(s) 42, 151, 158, 199
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 146, 290
BstC8I GCNNGC 4 cut(s) 239, 263, 265, 267
BstDEI CTNAG 2 cut(s) 183, 207
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 3 cut(s) 263, 265, 267
BstHHI GCGC 5 cut(s) 263, 265, 267, 269, 295
BstKTI GATC 4 cut(s) 45, 154, 161, 202
BstMBI GATC 4 cut(s) 42, 151, 158, 199
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 3 cut(s) 263, 265, 267
BstV1I GCAGC 2 cut(s) 198, 378
BsuRI GGCC 3 cut(s) 279, 342, 361
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 142, 295
Cac8I GCNNGC 4 cut(s) 239, 263, 265, 267
CfoI GCGC 5 cut(s) 263, 265, 267, 269, 295
Cfr13I GGNCC 1 cut(s) 299
CviAII CATG 1 cut(s) 58
DdeI CTNAG 2 cut(s) 183, 207
DpnI GATC 4 cut(s) 44, 153, 160, 201
DpnII GATC 4 cut(s) 42, 151, 158, 199
EaeI YGGCCR 2 cut(s) 340, 359
Eco47I GGWCC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 59, 84, 176, 198, 304, 358, 430
FatI CATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 212, 249, 392
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 212, 249, 392
FspI TGCGCA 1 cut(s) 294
GlaI GCGC 5 cut(s) 262, 264, 266, 268, 294
GluI GCNGC 3 cut(s) 212, 249, 392
GsuI CTGGAG 2 cut(s) 116, 380
HaeIII GGCC 3 cut(s) 279, 342, 361
HapII CCGG 1 cut(s) 343
HhaI GCGC 5 cut(s) 263, 265, 267, 269, 295
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 5 cut(s) 261, 263, 265, 267, 293
HinP1I GCGC 5 cut(s) 261, 263, 265, 267, 293
HincII GTYRAC 2 cut(s) 128, 168
HindII GTYRAC 2 cut(s) 128, 168
HinfI GANTC 2 cut(s) 92, 129
HpaII CCGG 1 cut(s) 343
HphI GGTGA 2 cut(s) 235, 340
Hpy166II GTNNAC 2 cut(s) 128, 168
Hpy188I TCNGA 2 cut(s) 158, 208
Hpy188III TCNNGA 3 cut(s) 96, 108, 386
Hpy8I GTNNAC 2 cut(s) 128, 168
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 146, 290
HpyCH4IV ACGT 2 cut(s) 124, 164
HpyCH4V TGCA 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 183, 207
HpySE526I ACGT 2 cut(s) 124, 164
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 5 cut(s) 261, 263, 265, 267, 293
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 4 cut(s) 42, 151, 158, 199
LmnI GCTCC 2 cut(s) 141, 399
LpnPI CCDG 6 cut(s) 146, 243, 251, 356, 383, 410
Lsp1109I GCAGC 2 cut(s) 198, 378
MaeII ACGT 2 cut(s) 124, 164
MaeIII GTNAC 1 cut(s) 253
MalI GATC 4 cut(s) 44, 153, 160, 201
MauBI CGCGCGCG 1 cut(s) 263
MboI GATC 4 cut(s) 42, 151, 158, 199
MboII GAAGA 3 cut(s) 330, 343, 364
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 3 cut(s) 216, 370, 420
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 2 cut(s) 86, 123
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 6 cut(s) 43, 149, 181, 214, 339, 342
Mox20I TGGCCA 1 cut(s) 361
MscI TGGCCA 1 cut(s) 361
MseI TTAA 2 cut(s) 9, 419
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 361
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 3 cut(s) 263, 265, 267
NdeII GATC 4 cut(s) 42, 151, 158, 199
NlaIII CATG 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 294
OliI CACNNNNGTG 1 cut(s) 288
PauI GCGCGC 3 cut(s) 261, 263, 265
PkrI GCNGC 3 cut(s) 213, 250, 393
PleI GAGTC 2 cut(s) 86, 123
PpsI GAGTC 2 cut(s) 86, 123
PshBI ATTAAT 2 cut(s) 9, 419
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspPI GGNCC 1 cut(s) 299
PteI GCGCGC 3 cut(s) 261, 263, 265
RseI CAYNNNNRTG 1 cut(s) 288
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 9, 419
SatI GCNGC 3 cut(s) 212, 249, 392
Sau3AI GATC 4 cut(s) 42, 151, 158, 199
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 86, 123
ScrFI CCNGG 1 cut(s) 398
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 3 cut(s) 216, 370, 420
SsiI CCGC 2 cut(s) 246, 249
StyD4I CCNGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 146, 290
TaiI ACGT 2 cut(s) 127, 167
TaqI TCGA 1 cut(s) 127
TasI AATT 3 cut(s) 216, 370, 420
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 9, 419
Tru9I TTAA 2 cut(s) 9, 419
TscAI CASTG 2 cut(s) 149, 295
TseI GCWGC 2 cut(s) 211, 391
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 2 cut(s) 149, 295
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 2 cut(s) 9, 419
XapI RAATTY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.