Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016451

Physical Location & Seq

Genomic Coordinates Reverse (-)

66481914 .. 66486012

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG476100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAATTGCGAACTGATAGTATATGATTATCAAGGCCCAGACACTTCCATTGGAGGTCCAAAGTCATGGGATAAGTCAAGGACAGCCTCAAAGATGCAAACTTGGCAAGGTTGTACCCACACAGGTGTGGTTTCCTTATCAGTTTGGTTTTCTCGTGAAACAATCTTTGAAGCCTTGCAAAGGTGGAATGGAAGAGCTCCCTCTGATGGCCTACTCCTGGGCTTCTGTATTGTCTTGATGGGCTTGGCTTGTGTCCCTATTGTGGCTCTCCACTTCTCTCATGTCTTGGAAGAAGATCCAGGTTGCTATTCAAGGGCATCTAACTCTGTTTTTGAGCCTGTGGTAGATGTACAAATGAATTTACTTGAGGAATTTCATTCAAGCTGTGTGGACTCATGGCTGACAAAATGGGGGACATGCTGCCCCGTGTGCAAGCATGATATGAGAACAAAATCTGTGAATCCTGAGATCAAGAGAAGGACCTGGTTGGACGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.71

Weight (kDa)

5.68

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016451)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0413381 RchiOBHm_Chr5g0056851 RchiOBHm_Chr7g0226991
rosa_multiflora	Rmu_sc0008546.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056330 Rroxscaffold_2G00096570 Rroxscaffold_5G00348720 Rroxscaffold_7G00197630
rosa_samantha	Rh1BG300600 Rh3AG259300 Rh5AG233000 Rh5BG453800 Rh5CG407100 Rh5CG476100
rosa_wichuraiana	Rw5G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	358, 371
AfaI	GTAC	2 cut(s)	115, 351
AfiI	CCNNNNNNNGG	4 cut(s)	180, 206, 217, 262
AgsI	TTSAA	3 cut(s)	170, 312, 381
AjnI	CCWGG	3 cut(s)	216, 298, 482
AleI	CACNNNNGTG	2 cut(s)	123, 125
AluBI	AGCT	2 cut(s)	197, 384
AluI	AGCT	2 cut(s)	197, 384
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	34, 208
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	2 cut(s)	358, 371
AspS9I	GGNCC	3 cut(s)	35, 56, 480
AvaII	GGWCC	2 cut(s)	56, 480
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	200, 232
BciT130I	CCWGG	3 cut(s)	218, 300, 484
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	3 cut(s)	218, 300, 484
Bme18I	GGWCC	2 cut(s)	56, 480
BmgT120I	GGNCC	3 cut(s)	35, 56, 480
BmrFI	CCNGG	3 cut(s)	218, 300, 484
BmsI	GCATC	2 cut(s)	84, 326
BpuEI	CTTGAG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 206, 217, 262
BseBI	CCWGG	3 cut(s)	218, 300, 484
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	180, 206, 217, 262
BseMII	CTCAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	2 cut(s)	36, 210
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	2 cut(s)	239, 427
BslI	CCNNNNNNNGG	4 cut(s)	180, 206, 217, 262
BsmFI	GGGAC	2 cut(s)	239, 427
BsnI	GGCC	2 cut(s)	36, 210
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	295, 468
BspANI	GGCC	2 cut(s)	36, 210
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	497
BspPI	GGATC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	295, 468
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	218, 300, 484
Bst6I	CTCTTC	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	298, 471
BstMBI	GATC	2 cut(s)	295, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 429
BstNI	CCWGG	3 cut(s)	218, 300, 484
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	216, 298, 482
BstV1I	GCAGC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	36, 210
Cac8I	GCNNGC	1 cut(s)	434
CciI	TCATGA	1 cut(s)	497
Cfr13I	GGNCC	3 cut(s)	35, 56, 480
CsiI	ACCWGGT	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	114, 350
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	6 cut(s)	66, 281, 396, 417, 437, 498
CviQI	GTAC	2 cut(s)	114, 350
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	297, 470
DpnII	GATC	2 cut(s)	295, 468
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	56, 480
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	3 cut(s)	216, 298, 482
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	6 cut(s)	69, 284, 399, 420, 440, 501
FaiI	YATR	9 cut(s)	22, 24, 67, 282, 397, 418, 438, 443, 499
FaqI	GGGAC	2 cut(s)	239, 427
FatI	CATG	6 cut(s)	65, 280, 395, 416, 436, 497
Fnu4HI	GCNGC	1 cut(s)	421
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	36, 210
Hin1II	CATG	6 cut(s)	69, 284, 399, 420, 440, 501
HinfI	GANTC	3 cut(s)	392, 460, 494
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	5 cut(s)	155, 235, 464, 472, 498
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	97, 178, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 429
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	6 cut(s)	69, 284, 399, 420, 440, 501
Kzo9I	GATC	2 cut(s)	295, 468
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	84, 326
MabI	ACCWGGT	1 cut(s)	482
MalI	GATC	2 cut(s)	297, 470
MboI	GATC	2 cut(s)	295, 468
MboII	GAAGA	3 cut(s)	204, 302, 305
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	4, 358, 371
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	4 cut(s)	47, 97, 211, 361
MslI	CAYNNNNRTG	2 cut(s)	123, 125
MspR9I	CCNGG	3 cut(s)	218, 300, 484
MvaI	CCWGG	3 cut(s)	218, 300, 484
MwoI	GCNNNNNNNGC	2 cut(s)	103, 429
NdeII	GATC	2 cut(s)	295, 468
NlaIII	CATG	6 cut(s)	69, 284, 399, 420, 440, 501
NspI	RCATGY	1 cut(s)	420
OliI	CACNNNNGTG	2 cut(s)	123, 125
PagI	TCATGA	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	460, 494
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	3 cut(s)	216, 298, 482
PspGI	CCWGG	3 cut(s)	216, 298, 482
PspPI	GGNCC	3 cut(s)	35, 56, 480
PspPPI	RGGWCCY	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	115, 351
RsaNI	GTAC	2 cut(s)	114, 350
RseI	CAYNNNNRTG	2 cut(s)	123, 125
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	295, 468
Sau96I	GGNCC	3 cut(s)	35, 56, 480
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	218, 300, 484
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	8 cut(s)	58, 112, 127, 185, 199, 304, 386, 485
SexAI	ACCWGGT	1 cut(s)	482
SfaNI	GCATC	2 cut(s)	84, 326
SinI	GGWCC	2 cut(s)	56, 480
SmiMI	CAYNNNNRTG	2 cut(s)	123, 125
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	4, 358, 371
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	3 cut(s)	216, 298, 482
TasI	AATT	3 cut(s)	4, 358, 371
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	460, 494
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	4 cut(s)	17, 365, 371, 486
VpaK11BI	GGWCC	2 cut(s)	56, 480
XagI	CCTNNNNNAGG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	358, 371
XceI	RCATGY	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.