Rmu_sc0017524.1_g000003

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017524.1
OG0008374
Physical Location & Seq
Reverse (-)
8493 .. 11006
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017524.1_g000003.1.cds

Sequence Viewer

Length: 675 bp
atggaggactgggaagaagatgcgagaattccatccctcctttctaaggagcctgcagtaaaaggtaactgggatgatgaagatgcggatgagaatgacgtgaaggactcatgggaggatgatgatgaacctgctcctccggaacctgcaccaaaggctcctgctgaaaaggctcccaagaaacctgcaacaaaggctgcagaaaagaaaggaaaagctgttgaagtacaaaaggaagagccactagatcccctggctgagaaacttcgccaacaaagactggtggaagaagcagattataaggccactaaagaactgttttctactagagatgagaagaacattgataatttcattcccaaatccgaaagtgacttcctggaatatgccgaacttatttcacataaacttcgtccatttgagaaaagttttcattatatcggtctacttaaggcagtaatgagactgtcaatgacttctttgaaaggagctgatgcaaaagatgttgcttcttcaattacggcaattgcaaatgagaagataaaagctgagaaggaagccaatgctggtaaaaagaagacaggtgccaagaaaaagcagcttcatgttgataagccggatgatgatatagctgttgatggctatgatccccttgatgactatgactttatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF3_subunit

Protein Analysis

224

Amino Acids

25.16

Weight (kDa)

4.8

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
Acc36I ACCTGC 3 cut(s) 139, 154, 193
AccB1I GGYRCC 1 cut(s) 584
AccI GTMKAC 1 cut(s) 445
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 242, 641
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 46
AflII CTTAAG 1 cut(s) 449
AgsI TTSAA 3 cut(s) 224, 484, 516
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 2 cut(s) 252, 378
AluBI AGCT 5 cut(s) 218, 491, 548, 601, 632
AluI AGCT 5 cut(s) 218, 491, 548, 601, 632
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 2 cut(s) 242, 641
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 197, 598
ApoI RAATTY 1 cut(s) 27
BanI GGYRCC 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 184, 610
BccI CCATC 2 cut(s) 40, 632
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 2 cut(s) 254, 380
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 2 cut(s) 245, 327
BfmI CTRYAG 2 cut(s) 54, 198
BfrI CTTAAG 1 cut(s) 449
BfuAI ACCTGC 3 cut(s) 139, 154, 193
BisI GCNGC 2 cut(s) 198, 599
BlsI GCNGC 2 cut(s) 199, 600
Bme1390I CCNGG 2 cut(s) 254, 380
BmgBI CACGTC 1 cut(s) 100
BmiI GGNNCC 5 cut(s) 51, 144, 159, 174, 586
BmrFI CCNGG 2 cut(s) 254, 380
BmrI ACTGGG 2 cut(s) 19, 79
BmsI GCATC 3 cut(s) 10, 73, 484
BmuI ACTGGG 2 cut(s) 19, 79
BpiI GAAGAC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 14, 74, 285
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 2 cut(s) 254, 380
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 5 cut(s) 32, 79, 94, 124, 625
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 249, 540
BseNI ACTGG 3 cut(s) 14, 74, 285
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 184, 610
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 584
BsiSI CCGG 2 cut(s) 140, 617
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 457
BsnI GGCC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 247, 646
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 250, 541
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 51, 144, 159, 174, 586
BspMAI CTGCAG 2 cut(s) 58, 202
BspMI ACCTGC 3 cut(s) 139, 154, 193
BspPI GGATC 2 cut(s) 242, 641
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 584
BspTI CTTAAG 1 cut(s) 449
BsrI ACTGG 3 cut(s) 14, 74, 285
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 247, 646
Bst2UI CCWGG 2 cut(s) 254, 380
Bst4CI ACNGT 2 cut(s) 318, 468
Bst6I CTCTTC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 45, 258, 549
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 5 cut(s) 32, 79, 94, 124, 625
BstKTI GATC 2 cut(s) 250, 649
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 2 cut(s) 247, 646
BstMWI GCNNNNNNNGC 3 cut(s) 155, 170, 194
BstNI CCWGG 2 cut(s) 254, 380
BstSCI CCNGG 2 cut(s) 252, 378
BstSFI CTRYAG 2 cut(s) 54, 198
BstV1I GCAGC 2 cut(s) 184, 610
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 305
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 5 cut(s) 32, 79, 94, 124, 625
BveI ACCTGC 3 cut(s) 139, 154, 193
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 111, 605
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 3 cut(s) 45, 258, 549
DpnI GATC 2 cut(s) 249, 648
DpnII GATC 2 cut(s) 247, 646
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 252, 378
FaeI CATG 2 cut(s) 114, 608
FatI CATG 2 cut(s) 110, 604
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 198, 599
FokI GGATG 5 cut(s) 19, 86, 101, 131, 632
Fsp4HI GCNGC 2 cut(s) 198, 599
FspBI CTAG 2 cut(s) 245, 327
GluI GCNGC 2 cut(s) 198, 599
HaeIII GGCC 1 cut(s) 305
HapII CCGG 2 cut(s) 140, 617
Hin1II CATG 2 cut(s) 114, 608
HinfI GANTC 1 cut(s) 107
HpaII CCGG 2 cut(s) 140, 617
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 97, 547
HpyCH4III ACNGT 2 cut(s) 318, 468
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 6 cut(s) 56, 149, 188, 200, 497, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 170, 194
HpyF3I CTNAG 3 cut(s) 45, 258, 549
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 114, 608
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 247, 646
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 5 cut(s) 49, 139, 163, 178, 488
Lsp1109I GCAGC 2 cut(s) 184, 610
LweI GCATC 3 cut(s) 10, 73, 484
MaeI CTAG 2 cut(s) 245, 327
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 65, 371
MalI GATC 2 cut(s) 249, 648
MboI GATC 2 cut(s) 247, 646
MboII GAAGA 9 cut(s) 26, 29, 92, 248, 299, 349, 504, 550, 589
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 247
MluCI AATT 4 cut(s) 27, 349, 516, 525
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 3 cut(s) 47, 109, 147
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 450
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 2 cut(s) 140, 617
MspR9I CCNGG 2 cut(s) 254, 380
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 2 cut(s) 254, 380
MwoI GCNNNNNNNGC 3 cut(s) 155, 170, 194
NdeII GATC 2 cut(s) 247, 646
NlaIII CATG 2 cut(s) 114, 608
NlaIV GGNNCC 5 cut(s) 51, 144, 159, 174, 586
NmuCI GTSAC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 2 cut(s) 199, 600
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 252, 378
PspGI CCWGG 2 cut(s) 252, 378
PspN4I GGNNCC 5 cut(s) 51, 144, 159, 174, 586
PstI CTGCAG 2 cut(s) 58, 202
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 198, 599
Sau3AI GATC 2 cut(s) 247, 646
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 254, 380
SfaNI GCATC 3 cut(s) 10, 73, 484
SfcI CTRYAG 2 cut(s) 54, 198
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 27, 349, 516, 525
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 245, 327
StyD4I CCNGG 2 cut(s) 252, 378
TaaI ACNGT 2 cut(s) 318, 468
TaiI ACGT 1 cut(s) 102
TaqII GACCGA 1 cut(s) 431
TasI AATT 4 cut(s) 27, 349, 516, 525
TatI WGTACW 1 cut(s) 226
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 197, 598
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 5 cut(s) 93, 141, 343, 422, 593
Vha464I CTTAAG 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 2 cut(s) 245, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.