Rmu_sc0029489.1_g000001

Callose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029489.1
OG0005959
Physical Location & Seq
Reverse (-)
1 .. 586
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029489.1_g000001.1.cds

Sequence Viewer

Length: 193 bp
atgtcgtcgtcgagagcggggccggatcaggggccgccgccgcagcggcgtatacagcggacgcagacagctggaaacctcggggaggcggcgttcgacagtgaggtggtgccgtcatcgctagtcgaaatcgctcccattcttcgtgtggccaacgaggtcgaatcgcacaatcccagagttgcttatctat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

64

Amino Acids

6.87

Weight (kDa)

5.64

Isoelectric Point (pI)

72.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 52
AciI CCGC 7 cut(s) 17, 35, 38, 41, 46, 58, 89
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 29, 85
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 3 cut(s) 20, 32, 150
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 20, 32
AvaI CYCGRG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 6 cut(s) 35, 38, 41, 44, 47, 90
BlsI GCNGC 6 cut(s) 36, 39, 42, 45, 48, 91
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 20, 32
BmiI GGNNCC 3 cut(s) 21, 33, 111
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 85
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 29, 85
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 22, 34, 152
BshNI GGYRCC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 29, 85
BsnI GGCC 3 cut(s) 22, 34, 152
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 7 cut(s) 17, 35, 38, 41, 46, 58, 89
BspANI GGCC 3 cut(s) 22, 34, 152
BspLI GGNNCC 3 cut(s) 21, 33, 111
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 25
BssNAI GTATAC 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 101
BstENI CCTNNNNNAGG 1 cut(s) 83
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 5 cut(s) 40, 43, 46, 55, 118
BstV1I GCAGC 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 53
BsuRI GGCC 3 cut(s) 22, 34, 152
BtgZI GCGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 20, 32
CseI GACGC 1 cut(s) 70
CviJI RGCY 4 cut(s) 22, 34, 71, 152
CviKI_1 RGCY 4 cut(s) 22, 34, 71, 152
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 83
FaiI YATR 1 cut(s) 53
FauI CCCGC 1 cut(s) 10
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 6 cut(s) 35, 38, 41, 44, 47, 90
Fsp4HI GCNGC 6 cut(s) 35, 38, 41, 44, 47, 90
FspBI CTAG 1 cut(s) 122
GluI GCNGC 6 cut(s) 35, 38, 41, 44, 47, 90
HaeIII GGCC 3 cut(s) 22, 34, 152
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 10, 13
HpyCH4III ACNGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 43, 46, 55, 118
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 14, 36, 57
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 17
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MnlI CCTC 4 cut(s) 79, 89, 97, 151
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 3 cut(s) 46, 58, 71
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 40, 43, 46, 55, 118
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 21, 33, 111
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 6 cut(s) 36, 39, 42, 45, 48, 91
PspN4I GGNNCC 3 cut(s) 21, 33, 111
PspPI GGNCC 2 cut(s) 20, 32
PvuII CAGCTG 1 cut(s) 71
SatI GCNGC 6 cut(s) 35, 38, 41, 44, 47, 90
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 2 cut(s) 20, 32
SetI ASST 4 cut(s) 73, 81, 108, 162
SsiI CCGC 7 cut(s) 17, 35, 38, 41, 46, 58, 89
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 4 cut(s) 11, 96, 126, 162
TauI GCSGC 5 cut(s) 37, 40, 43, 49, 92
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 43
TspRI CASTG 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.