Rorug05G0471200

Callose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005959
Physical Location & Seq
Forward (+)
64762164 .. 64764506
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0471200.1

Sequence Viewer

Length: 870 bp
ATGGCGGGCACGGGCGCCTCCTTCGCCCCCCACCACTTAATCGGGTCCACCGTCCCCGAAAGTTCCAGAACCCTCCGAACCGGAGCTCCATTCTCCGCTCGTATCTCCGCCAGCGGCAGCCACCTCGCCACCACTCCCGACGACCCCGCCGCCGGCCCCTCCTGCATCTACGTCGGCCCAATCGAAACCGCCAGCAAAGAAACCCTCGAAGCCCTCTACCGTCAAGCACGTGATGCGTACTACAGTGGCGACCCTTTGATAGTTGATGACATGTTCGATAGAGTAGAGTTGAAGTTGAGATGGTACGGTTCGAAATGCGTGGTGAAATACCCCCGTTGCAGTCTCCGGCGACAGTCGGCTTACTCCGATGCTGAGGCAGACGTATCACAGGTTTTTGCATTAGCGAGCATATGGATACTCATTCTTGCGTTTGGCACTGGATCGTTTCTCATGCCCGTATTATACACCGTTGGCCTAGCTTATCAAAATGCATTCAGTCCAGGACTTTCTTATGTAAATCCAGCAGCTAGTCTTTCCGTGCTGAATAGCATTCTCTTTATGATAGTCGGTTCTGTCATTGGTCTCCCTATTGCATCTGCTTCGGTTAAAGTACTTGAAGGCCTATGGACGAACGACTTGATGGCACTGAAAGGGGTGTGCCCAAACTGTGGGGAGGAGGTGTTTGCATTTGTGAAATCAGATCAGTCTAATAACTCCCCACATAGAGCAAATTGTCATGTATGTGAATGCTTGTTAGAATTCCGCACCAAGGCTGAGAAATCCCTTTCACCTCTGGGTAGAAGATGGGCTTATGGACGTATCTATCTTGTTTCAAGAAAAGGTGGAGGTCGACTTCAAAGAAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

289

Amino Acids

31.31

Weight (kDa)

8.74

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 850
AciI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 1 cut(s) 758
AcvI CACGTG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 239, 305, 612
AfiI CCNNNNNNNGG 3 cut(s) 152, 668, 769
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 4 cut(s) 292, 617, 834, 857
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 3 cut(s) 86, 479, 527
AluI AGCT 3 cut(s) 86, 479, 527
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 347, 587
AlwI GGATC 1 cut(s) 448
AoxI GGCC 4 cut(s) 154, 175, 472, 619
ApeKI GCWGC 2 cut(s) 117, 524
ApoI RAATTY 1 cut(s) 758
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 45, 155, 176
AsuHPI GGTGA 2 cut(s) 334, 780
AsuII TTCGAA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 2 cut(s) 11, 662
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 88
BbrPI CACGTG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 129, 536
BccI CCATC 3 cut(s) 294, 634, 798
BcgI CGANNNNNNTGC 6 cut(s) 106, 140, 154, 188, 582, 616
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 347, 587
BfaI CTAG 2 cut(s) 476, 528
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 408
BisI GCNGC 4 cut(s) 115, 118, 150, 525
BlsI GCNGC 4 cut(s) 116, 119, 151, 526
BmcAI AGTACT 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 45, 155, 176
BmiI GGNNCC 3 cut(s) 16, 46, 157
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 4 cut(s) 174, 223, 358, 602
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 665, 695
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 668, 769
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 768
BseLI CCNNNNNNNGG 3 cut(s) 152, 668, 769
BseMII CTCAG 2 cut(s) 363, 765
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 2 cut(s) 11, 662
BseXI GCAGC 2 cut(s) 129, 536
BshFI GGCC 4 cut(s) 156, 177, 474, 621
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 81, 153, 346
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 152, 668, 769
BsmAI GTCTC 2 cut(s) 347, 587
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 3 cut(s) 491, 549, 752
BsnI GGCC 4 cut(s) 156, 177, 474, 621
Bso31I GGTCTC 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 11, 88, 662
Bsp143I GATC 2 cut(s) 440, 700
BspACI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
BspANI GGCC 4 cut(s) 156, 177, 474, 621
BspCNI CTCAG 2 cut(s) 364, 766
BspLI GGNNCC 3 cut(s) 16, 46, 157
BspPI GGATC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 2 cut(s) 440, 700
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 5 cut(s) 7, 112, 154, 193, 406
BstDEI CTNAG 2 cut(s) 372, 774
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 443, 703
BstMAI GTCTC 2 cut(s) 347, 587
BstMBI GATC 2 cut(s) 440, 700
BstMWI GCNNNNNNNGC 3 cut(s) 23, 162, 233
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 11, 662
BstV1I GCAGC 2 cut(s) 129, 536
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 156, 177, 474, 621
BtsIMutI CAGTG 3 cut(s) 250, 435, 644
Cac8I GCNNGC 5 cut(s) 7, 112, 154, 193, 406
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 45, 155, 176
Csp6I GTAC 3 cut(s) 238, 304, 611
CviAII CATG 3 cut(s) 271, 451, 737
CviQI GTAC 3 cut(s) 238, 304, 611
DdeI CTNAG 2 cut(s) 372, 774
DinI GGCGCC 1 cut(s) 16
DpnI GATC 2 cut(s) 442, 702
DpnII GATC 2 cut(s) 440, 700
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 768
Eco147I AGGCCT 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 768
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 3 cut(s) 274, 454, 740
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 270, 450, 736
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 1 cut(s) 850
Fnu4HI GCNGC 4 cut(s) 115, 118, 150, 525
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 115, 118, 150, 525
FspBI CTAG 2 cut(s) 476, 528
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 115, 118, 150, 525
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 4 cut(s) 156, 177, 474, 621
HapII CCGG 3 cut(s) 81, 153, 346
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 274, 454, 740
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 851
HindII GTYRAC 1 cut(s) 851
HpaII CCGG 3 cut(s) 81, 153, 346
HphI GGTGA 2 cut(s) 334, 780
Hpy166II GTNNAC 2 cut(s) 48, 851
Hpy188I TCNGA 3 cut(s) 77, 367, 700
Hpy188III TCNNGA 3 cut(s) 66, 137, 834
Hpy8I GTNNAC 2 cut(s) 48, 851
Hpy99I CGWCG 2 cut(s) 143, 176
HpyAV CCTTC 3 cut(s) 31, 611, 855
HpyCH4III ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
HpyCH4IV ACGT 4 cut(s) 171, 229, 381, 817
HpyCH4V TGCA 6 cut(s) 165, 339, 398, 491, 593, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 162, 233
HpyF3I CTNAG 2 cut(s) 372, 774
HpySE526I ACGT 4 cut(s) 171, 229, 381, 817
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 274, 454, 740
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 440, 700
LmnI GCTCC 2 cut(s) 83, 91
Lsp1109I GCAGC 2 cut(s) 129, 536
LweI GCATC 4 cut(s) 174, 223, 358, 602
MaeI CTAG 2 cut(s) 476, 528
MaeII ACGT 4 cut(s) 171, 229, 381, 817
MalI GATC 2 cut(s) 442, 702
MbiI CCGCTC 1 cut(s) 98
MboI GATC 2 cut(s) 440, 700
MboII GAAGA 1 cut(s) 813
MhlI GDGCHC 3 cut(s) 11, 88, 662
MluCI AATT 2 cut(s) 730, 758
Mly113I GGCGCC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 2 cut(s) 38, 606
MslI CAYNNNNRTG 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 3 cut(s) 81, 153, 346
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 3 cut(s) 491, 549, 752
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 23, 162, 233
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 15
NdeI CATATG 1 cut(s) 410
NdeII GATC 2 cut(s) 440, 700
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 3 cut(s) 274, 454, 740
NlaIV GGNNCC 3 cut(s) 16, 46, 157
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 311
PceI AGGCCT 1 cut(s) 621
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 180
PctI GAATGC 3 cut(s) 491, 549, 752
PdiI GCCGGC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 116, 119, 151, 526
PluTI GGCGCC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 499
PspCI CACGTG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 16, 46, 157
PspPI GGNCC 3 cut(s) 45, 155, 176
RsaI GTAC 3 cut(s) 239, 305, 612
RsaNI GTAC 3 cut(s) 238, 304, 611
RseI CAYNNNNRTG 1 cut(s) 741
SacI GAGCTC 1 cut(s) 88
SalI GTCGAC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 38, 606
SatI GCNGC 4 cut(s) 115, 118, 150, 525
Sau3AI GATC 2 cut(s) 440, 700
Sau96I GGNCC 3 cut(s) 45, 155, 176
ScaI AGTACT 1 cut(s) 612
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 11, 88, 662
SfaNI GCATC 4 cut(s) 174, 223, 358, 602
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 311
SinI GGWCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 741
Sse9I AATT 2 cut(s) 730, 758
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 2 cut(s) 476, 528
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
TaiI ACGT 4 cut(s) 174, 232, 384, 820
TaqI TCGA 5 cut(s) 183, 207, 276, 311, 850
TasI AATT 2 cut(s) 730, 758
TatI WGTACW 1 cut(s) 610
TauI GCSGC 2 cut(s) 117, 152
Tru1I TTAA 2 cut(s) 38, 606
Tru9I TTAA 2 cut(s) 38, 606
TscAI CASTG 3 cut(s) 250, 442, 651
TseI GCWGC 2 cut(s) 117, 524
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 3 cut(s) 250, 442, 651
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 758
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 850
XspI CTAG 2 cut(s) 476, 528
ZrmI AGTACT 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.