Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030769.1

Orthogroup ID

OG0006535

Physical Location & Seq

Genomic Coordinates Reverse (-)

4028 .. 5092

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030769.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggtaggggaagccgaagccaatgccatattctctggcgccatccaccttcttagtgcaggaaccagcgatttcatccagaactactacatcaatccatttcttagaggctacacacctgagcaattctcagaaattctaatgagatcctactcctctttcattcagaagttgtatggactcggagcacgaaggattggagtcacaaacttgccacctataggatgtttgccagcagcaattaccctatttggctcaggaagcaaccagtggaacataagattgaatcaagatgccattttattcaataacaagcttaacaacacatctcaaactttgcagaagagtcttcccggactcaagctcgtagtttttgatatctaccagcccctcctggatatgatcacaaaccccagtgacaatggtacatttgaaacatctgtgctctgcaactctaggtctgtaggaacatgcaacaatgcaactggttatgtgttctgggatggatttcatccctctgaagctgccaatgaggtcttagctggtaatctacttgcacagggcatcgatctcatatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

5.02

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53100 AT5G03810 AT5G03820 AT5G03820
fragaria_vesca	FvH4_6g17360 FvH4_6g17360 FvH4_6g17360
prunus_persica	Prupe.7G121900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471511 RchiOBHm_Chr3g0471521
rosa_laevigata	RLG00000024157 RLG00000024170 RLG00000024172
rosa_multiflora	Rmu_sc0006582.1_g000003 Rmu_sc0030769.1_g000002 Rmu_ssc0000445.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409830 Rroxscaffold_6G00409890
rosa_rugosa	Rorug03G0118200
rosa_samantha	Rh3AG168300 Rh3BG193900 Rh3CG184300 Rh3DG181600 Rh3DG181800
rosa_wichuraiana	Rw3G015850 Rw3G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	286, 307, 434
AjnI	CCWGG	1 cut(s)	393
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	4 cut(s)	316, 364, 524, 542
AluI	AGCT	4 cut(s)	316, 364, 524, 542
Alw21I	GWGCWC	2 cut(s)	190, 447
AlwI	GGATC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	236, 524
ApoI	RAATTY	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	190, 447
BbvI	GCAGC	2 cut(s)	248, 511
BccI	CCATC	2 cut(s)	50, 497
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	2 cut(s)	219, 462
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	237, 525
BlsI	GCNGC	2 cut(s)	238, 526
Bme1390I	CCNGG	2 cut(s)	354, 395
BmiI	GGNNCC	2 cut(s)	40, 64
BmrFI	CCNGG	2 cut(s)	354, 395
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	283, 573
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	2 cut(s)	120, 256
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	268, 414, 490
BseBI	CCWGG	1 cut(s)	395
BseCI	ATCGAT	1 cut(s)	567
BseGI	GGATG	5 cut(s)	42, 75, 230, 508, 511
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	111, 144, 270
BseNI	ACTGG	3 cut(s)	268, 414, 490
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	248, 511
BsgI	GTGCAG	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	190, 447
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	190, 447
Bsp143I	GATC	3 cut(s)	146, 402, 568
BspCNI	CTCAG	3 cut(s)	112, 143, 269
BspDI	ATCGAT	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	40, 64
BspPI	GGATC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	268, 414, 490
BssMI	GATC	3 cut(s)	146, 402, 568
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	6 cut(s)	53, 104, 120, 130, 256, 538
BstF5I	GGATG	5 cut(s)	42, 75, 230, 508, 511
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	149, 405, 571
BstMBI	GATC	3 cut(s)	146, 402, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	352, 393
BstSFI	CTRYAG	2 cut(s)	219, 462
BstV1I	GCAGC	2 cut(s)	248, 511
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	567
BsuTUI	ATCGAT	1 cut(s)	567
BtsCI	GGATG	5 cut(s)	42, 75, 230, 508, 511
BtsIMutI	CAGTG	2 cut(s)	275, 421
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	471
CviJI	RGCY	9 cut(s)	14, 20, 111, 255, 316, 364, 388, 524, 542
CviKI_1	RGCY	9 cut(s)	14, 20, 111, 255, 316, 364, 388, 524, 542
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	6 cut(s)	53, 104, 120, 130, 256, 538
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	148, 404, 570
DpnII	GATC	3 cut(s)	146, 402, 568
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	379
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	1 cut(s)	474
FaiI	YATR	8 cut(s)	29, 177, 221, 278, 401, 472, 492, 575
FatI	CATG	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	237, 525
FokI	GGATG	5 cut(s)	29, 62, 237, 498, 515
Fsp4HI	GCNGC	2 cut(s)	237, 525
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	237, 525
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	474
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	5 cut(s)	180, 201, 286, 346, 357
HpaII	CCGG	1 cut(s)	354
Hpy188I	TCNGA	4 cut(s)	133, 168, 185, 520
Hpy188III	TCNNGA	4 cut(s)	79, 258, 290, 579
HpyAV	CCTTC	2 cut(s)	59, 186
HpyCH4V	TGCA	6 cut(s)	59, 340, 450, 474, 482, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	6 cut(s)	53, 104, 120, 130, 256, 538
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	474
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	146, 402, 568
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	2 cut(s)	248, 511
LweI	GCATC	2 cut(s)	283, 573
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	202, 416
MalI	GATC	3 cut(s)	148, 404, 570
MboI	GATC	3 cut(s)	146, 402, 568
MboII	GAAGA	2 cut(s)	341, 355
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	190, 447
MluCI	AATT	3 cut(s)	125, 135, 240
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	4 cut(s)	174, 210, 351, 355
MnlI	CCTC	5 cut(s)	101, 166, 401, 526, 526
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	354, 395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	146, 402, 568
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	2 cut(s)	40, 64
NmuCI	GTSAC	2 cut(s)	202, 416
NspI	RCATGY	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	286
PfoI	TCCNGGA	2 cut(s)	352, 393
PkrI	GCNGC	2 cut(s)	238, 526
PleI	GAGTC	4 cut(s)	174, 209, 351, 354
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	4 cut(s)	174, 209, 351, 354
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	40, 64
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	237, 525
Sau3AI	GATC	3 cut(s)	146, 402, 568
SchI	GAGTC	4 cut(s)	174, 210, 351, 355
ScrFI	CCNGG	2 cut(s)	354, 395
SduI	GDGCHC	2 cut(s)	190, 447
SetI	ASST	9 cut(s)	51, 121, 220, 318, 366, 461, 526, 537, 544
SfaNI	GCATC	2 cut(s)	283, 573
SfcI	CTRYAG	2 cut(s)	219, 462
SfoI	GGCGCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	125, 135, 240
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	352, 393
TaqI	TCGA	1 cut(s)	567
TasI	AATT	3 cut(s)	125, 135, 240
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	275, 421
TseFI	GTSAC	2 cut(s)	202, 416
TseI	GCWGC	2 cut(s)	236, 524
Tsp45I	GTSAC	2 cut(s)	202, 416
TspDTI	ATGAA	3 cut(s)	64, 151, 500
TspRI	CASTG	2 cut(s)	275, 421
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	474
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.