Rmu_ssc0000026.1_g000006

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000026.1
OG0004745
Physical Location & Seq
Forward (+)
7525 .. 10169
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
atgcaggagcgccgtacaacaacgaccaagagaaagacctcgcttagaggactgggtgcccggagagcttgcgccaccgagatagaacagcgaccgccggagaccggtacaagacaatgcaacgggcggatgcccgatataggttttctggggagacccagactaggaaccttctctccttctctgcttcacttccagccacctctgaatctctctatctctctctctttgcgtttgaatttcccacgggtaatctcatcggccaccaaagacttcaatttctcaatcaattttacattcggagtgatggaggagcaattcgtactcagagtcccaccttcagttgcagagagattagatcgtcttctcagcgagaatgcttcttcagacgacaagtcgttggatttgtctttcgaagaggatggccggagtggaacatttgtaattggcaatgaccggttccctgcatcgctcttggatcttcctactgttgtggaatcctacaaaacgtatgacgatagtgtgttaattaagactgcagatattggtcagatgattatggttagagatccaaatgatcctgctccagatacagttgagtacaggcatggtctcacccctccgatgagggatgctcgaaagcgaagatttcgcagggagcctgatctaaatcctgagcttgtccagcgtgttgagcaagatctactgaacattagtgctggtggaccagctgacaatgtggatatccttttatataatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

254

Amino Acids

28.61

Weight (kDa)

6.21

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 103 - 234 3e-32 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 2 cut(s) 95, 127
AclWI GGATC 3 cut(s) 486, 563, 572
AcoI YGGCCR 2 cut(s) 261, 424
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 324, 369
AfaI GTAC 4 cut(s) 16, 109, 324, 602
AfiI CCNNNNNNNGG 3 cut(s) 104, 140, 164
AgeI ACCGGT 2 cut(s) 104, 456
AgsI TTSAA 2 cut(s) 238, 277
AhdI GACNNNNNGTC 1 cut(s) 394
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 68, 679, 731
AluI AGCT 3 cut(s) 68, 679, 731
Alw26I GTCTC 3 cut(s) 95, 148, 617
AlwI GGATC 3 cut(s) 486, 563, 572
AoxI GGCC 2 cut(s) 261, 424
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 2 cut(s) 104, 456
AspLEI GCGC 2 cut(s) 12, 74
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 356
BccI CCATC 2 cut(s) 301, 416
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 95, 148, 617
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 13
BglII AGATCT 1 cut(s) 700
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 725
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 58, 169, 461, 660
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 120, 476, 622
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 356
BplI GAGNNNNNCTC 2 cut(s) 619, 651
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 3 cut(s) 95, 148, 617
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 2 cut(s) 104, 456
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 140, 164
Bse118I RCCGGY 2 cut(s) 104, 456
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 135, 427, 637
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 104, 140, 164
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 3 cut(s) 340, 382, 666
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 263, 426
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 2 cut(s) 104, 456
BsiEI CGRYCG 1 cut(s) 95
BsiSI CCGG 5 cut(s) 61, 98, 105, 427, 457
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 104, 140, 164
BsmAI GTCTC 3 cut(s) 95, 148, 617
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 263, 426
Bso31I GGTCTC 3 cut(s) 95, 148, 617
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 6 cut(s) 358, 478, 568, 577, 664, 700
BspACI CCGC 2 cut(s) 95, 127
BspANI GGCC 2 cut(s) 263, 426
BspCNI CTCAG 3 cut(s) 339, 381, 667
BspLI GGNNCC 4 cut(s) 58, 169, 461, 660
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 486, 563, 572
BspT104I TTCGAA 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 3 cut(s) 95, 148, 617
BsrDI GCAATG 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 104, 456
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 2 cut(s) 104, 456
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
Bst4CI ACNGT 2 cut(s) 490, 595
Bst6I CTCTTC 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 4 cut(s) 44, 326, 368, 675
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 135, 427, 637
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 74
BstKTI GATC 6 cut(s) 361, 481, 571, 580, 667, 703
BstMAI GTCTC 3 cut(s) 95, 148, 617
BstMBI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 65, 685, 694
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 478, 568, 700
BstYI RGATCY 3 cut(s) 478, 568, 700
BsuRI GGCC 2 cut(s) 263, 426
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 135, 427, 637
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 12, 74
Cfr10I RCCGGY 2 cut(s) 104, 456
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 4 cut(s) 15, 108, 323, 601
CspAI ACCGGT 2 cut(s) 104, 456
CviAII CATG 1 cut(s) 608
CviJI RGCY 7 cut(s) 68, 199, 263, 426, 661, 679, 731
CviKI_1 RGCY 7 cut(s) 68, 199, 263, 426, 661, 679, 731
CviQI GTAC 4 cut(s) 15, 108, 323, 601
DdeI CTNAG 4 cut(s) 44, 326, 368, 675
DpnI GATC 6 cut(s) 360, 480, 570, 579, 666, 702
DpnII GATC 6 cut(s) 358, 478, 568, 577, 664, 700
DriI GACNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 2 cut(s) 261, 424
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 142
Eco31I GGTCTC 3 cut(s) 95, 148, 617
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 324, 369
EcoRV GATATC 1 cut(s) 745
FaeI CATG 1 cut(s) 611
FaiI YATR 6 cut(s) 140, 513, 560, 609, 754, 756
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 607
FokI GGATG 3 cut(s) 142, 434, 644
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 11, 73
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 263, 426
HapII CCGG 5 cut(s) 61, 98, 105, 427, 457
HhaI GCGC 2 cut(s) 12, 74
Hin1II CATG 1 cut(s) 611
Hin6I GCGC 2 cut(s) 10, 72
HinP1I GCGC 2 cut(s) 10, 72
HinfI GANTC 3 cut(s) 208, 330, 497
HpaII CCGG 5 cut(s) 61, 98, 105, 427, 457
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 6 cut(s) 207, 302, 329, 388, 552, 624
Hpy188III TCNNGA 2 cut(s) 587, 674
Hpy8I GTNNAC 1 cut(s) 725
HpyAV CCTTC 3 cut(s) 181, 189, 348
HpyCH4III ACNGT 2 cut(s) 490, 595
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 5 cut(s) 4, 120, 347, 467, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 685, 694
HpyF3I CTNAG 4 cut(s) 44, 326, 368, 675
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 1 cut(s) 611
HspAI GCGC 2 cut(s) 10, 72
Kzo9I GATC 6 cut(s) 358, 478, 568, 577, 664, 700
LmnI GCTCC 4 cut(s) 7, 313, 589, 658
LweI GCATC 3 cut(s) 120, 476, 622
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 509
MalI GATC 6 cut(s) 360, 480, 570, 579, 666, 702
MboI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
MboII GAAGA 5 cut(s) 356, 375, 428, 473, 657
MflI RGATCY 3 cut(s) 478, 568, 700
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 6 cut(s) 238, 277, 289, 317, 444, 528
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 7 cut(s) 41, 49, 213, 304, 412, 621, 630
MseI TTAA 2 cut(s) 527, 531
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 5 cut(s) 61, 98, 105, 427, 457
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 3 cut(s) 65, 685, 694
NciI CCSGG 1 cut(s) 61
NdeII GATC 6 cut(s) 358, 478, 568, 577, 664, 700
NlaIII CATG 1 cut(s) 611
NlaIV GGNNCC 4 cut(s) 58, 169, 461, 660
NspV TTCGAA 1 cut(s) 414
PacI TTAATTAA 1 cut(s) 531
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 208, 497
PinAI ACCGGT 2 cut(s) 104, 456
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PspN4I GGNNCC 4 cut(s) 58, 169, 461, 660
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 3 cut(s) 478, 568, 700
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 4 cut(s) 16, 109, 324, 602
RsaNI GTAC 4 cut(s) 15, 108, 323, 601
SaqAI TTAA 2 cut(s) 527, 531
Sau3AI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 61
SetI ASST 9 cut(s) 41, 70, 145, 173, 205, 340, 512, 681, 733
SfaNI GCATC 3 cut(s) 120, 476, 622
SfcI CTRYAG 1 cut(s) 537
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 725
Sse9I AATT 6 cut(s) 238, 277, 289, 317, 444, 528
SsiI CCGC 2 cut(s) 95, 127
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 490, 595
TaiI ACGT 1 cut(s) 512
TaqI TCGA 2 cut(s) 414, 637
TasI AATT 6 cut(s) 238, 277, 289, 317, 444, 528
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 2 cut(s) 208, 497
Tru1I TTAA 2 cut(s) 527, 531
Tru9I TTAA 2 cut(s) 527, 531
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 238
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.