Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

71630 .. 72728

Gene Structure 1099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgaacaaccaggaagttcttagccaagcgccagagatgctaaataacaggcctgctcgtgatttcacagttcatattgatcggtttgggtacatctttagatatgtaacccatgcagaagctgtggcagatgcaatccagaggctttggcccattttcaaagccatctttgatcttcgtgcttgggacatgcggacaatggagtctatttgccgagcttgcaaatacgctgtgagaacttctggaaggtgcatgggaacgacaattggagaaatgctagagaagattcaagaattatataaacagcatcaccaaccatgcttcctttatctctctagtgaagttataaagatatttggctcagacccgtcatgtgctgattatttgaaaaatttgattgaatcactctttcagcacacaacacgtattctcacgagcattcaagaatttacttccataccagatatagcagatgattgctttctgctcgcattgagatgcatccgttattgtgcacacttgtttattccttctgcagcatttccagcattagtagattgctcattgattggcattacagttcaacacaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

197

Amino Acids

22.68

Weight (kDa)

6.64

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_TNPO3_IPO13_4th	PF24139	44 - 144	6.4e-20	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AasI	GACNNNNNNGTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	391, 446
AfaI	GTAC	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	6 cut(s)	160, 290, 388, 401, 443, 584
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	122, 218
AluI	AGCT	2 cut(s)	122, 218
Alw21I	GWGCWC	1 cut(s)	517
Alw44I	GTGCAC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	50, 149
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	391, 446
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	517
BauI	CACGAG	2 cut(s)	57, 433
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	11
BfaI	CTAG	2 cut(s)	278, 336
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	5 cut(s)	27, 121, 316, 488, 510
BsaAI	YACGTR	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	548
BshFI	GGCC	2 cut(s)	52, 151
BsiHKAI	GWGCWC	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	52, 151
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	79, 172
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	52, 151
BspCNI	CTCAG	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	538
BssMI	GATC	2 cut(s)	79, 172
BssSI	CACGAG	2 cut(s)	57, 433
Bst2BI	CACGAG	2 cut(s)	57, 433
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	70, 580
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	54, 220, 489
BstDEI	CTNAG	2 cut(s)	20, 361
BstF5I	GGATG	1 cut(s)	501
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	82, 175
BstMBI	GATC	2 cut(s)	79, 172
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 219, 545
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	52, 151
BtsCI	GGATG	1 cut(s)	501
Cac8I	GCNNGC	3 cut(s)	54, 220, 489
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	5 cut(s)	113, 190, 253, 318, 372
CviJI	RGCY	8 cut(s)	24, 52, 122, 145, 151, 164, 218, 360
CviKI_1	RGCY	8 cut(s)	24, 52, 122, 145, 151, 164, 218, 360
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	20, 361
DpnI	GATC	2 cut(s)	81, 174
DpnII	GATC	2 cut(s)	79, 172
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	503
FaeI	CATG	5 cut(s)	116, 193, 256, 321, 375
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	5 cut(s)	112, 189, 252, 317, 371
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	2 cut(s)	278, 336
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	52, 151
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	5 cut(s)	116, 193, 256, 321, 375
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	203, 286, 401
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	6 cut(s)	59, 139, 243, 290, 433, 443
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	240, 540
HpyCH4III	ACNGT	2 cut(s)	70, 580
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	7 cut(s)	116, 134, 222, 252, 501, 515, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 219, 545
HpyF3I	CTNAG	2 cut(s)	20, 361
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	5 cut(s)	116, 193, 256, 321, 375
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	79, 172
LpnPI	CCDG	9 cut(s)	23, 34, 45, 66, 152, 228, 474, 558, 574
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	5 cut(s)	27, 121, 316, 488, 510
MaeI	CTAG	2 cut(s)	278, 336
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	81, 174
MboI	GATC	2 cut(s)	79, 172
MboII	GAAGA	2 cut(s)	167, 295
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	4 cut(s)	264, 293, 391, 446
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	37, 219, 545
NdeII	GATC	2 cut(s)	79, 172
NlaIII	CATG	5 cut(s)	116, 193, 256, 321, 375
NmeAIII	GCCGAG	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	52
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	286, 401
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	496
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	2 cut(s)	79, 172
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	517
SetI	ASST	5 cut(s)	124, 220, 251, 427, 593
SfaNI	GCATC	5 cut(s)	27, 121, 316, 488, 510
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	496
Sse9I	AATT	4 cut(s)	264, 293, 391, 446
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	278, 336
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	70, 580
TaiI	ACGT	1 cut(s)	427
TasI	AATT	4 cut(s)	264, 293, 391, 446
TfiI	GAWTC	2 cut(s)	286, 401
TseI	GCWGC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	17, 62
TspGWI	ACGGA	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	513
XapI	RAATTY	2 cut(s)	391, 446
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	2 cut(s)	278, 336
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.