Rmu_ssc0000126.1_g000071

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000126.1
OG0004987
Physical Location & Seq
Forward (+)
335421 .. 344500
9080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2874 bp
atggagaaaccagaggcagctggtggagataagcaggaattagcagcgcgaaagagcaatgatgttggagtacatcctagtagtaagctggaaagtggatcatcaagtacttcatttaagtggatggcattcgacacagaagcagctgaagagtctagcaacactgctgctgctgctgcttctggtgacgttgatggaattttagactcaaaaatcataacggagaaggcgagcatagtggcaaggacagcagaatggggagttgtggtgaagccggatgattctggtgaaggaacttttaaggccatagggaggtcatcagatgatggcaacaaaagcaaaaacacatcagggagatttgaatcaacaaggacatcatcagagtcaagtcatgggtctgatcagttgcctaatccaagggtgtcaagtgagttgaagacagctttggctacattgcagcagacttttgttgtgtctgatgccacaaagcctgattgcccaatcgtgtatgccagcagtggcttctttactatgactggttactcttcaaaagaggtcattggaagaaactgtcgctttcttcagggaccggaaacagaccagaatgaagtggccaaaatccgaaacgcagtcaaaactgggtctagctactgcggtaggctcttcaactacaagaaagatggcactcctttttggaatcttctcaccgtcaccccaatcaaagatgacaatggaaaaaccatcaagtttattggaatgcaggttgaggtcagcaagtacacagaaggggtgaatgagaaggcattgaggccaaatgggttgtccacgtcactaatccgttatgacgctcgacagaaggagaaagcattaggctccattgttgaagttgtacaaactgtgaaacatccacgttctcacatgcaggatgctagcaatgagaatactaaaaatcatgaagagccggataacatgaaccttaattatgttcttccaaaatctgctgcattgagtacacctgttagagagactcctcaggtggatgtgaagggtgatgcaactcgggggagattttcccaggatgcgggcaaaaatcctaaaaagtcagggcgcagcccctcaatgggatttagatcaaagtctctaggctctgaaggcaggcttgaaaaagaaccaagtgttgaaccagaggatttgatgaccatagatatagaaaatgctgatagttgggaccgcacagaaagggaaagggatatacgccaaggaattgacctagcaaccacattggaacgcattgaaaagaactttgtgatttctgatcctagaattcctgataatccaattatatttgcatctgatagttttctagaactgacggaatatacacgtgaggaaattctgggaagaaattgtcgttttcttcaaggtcctgaaacagatcaagcaacagtctcaaaaataagagatgccatcagagaacaacgggaaattactgtacagttaatcaactatactaagagtggaaagaagttttggaatttgttccacttgcaacccatgcgtgaccataagggtgaacttcaatatttcattggtgtccaattggatggtagtgatcatgtagaacctctgcgaaatcgcctgtcagagagagcagagctagaaagttctaaagtggtgaaagccactgcagaaaatgttaacgaggctgtccgagaacttcctgatgccaacttgagaccagaagatctgtgggcaattcattctcgtcctgtcttcccaagacctcacaaaaggggtagtgctagttggttagcaatacaagagattacttcacgtggtgaaaaaattgatctgcatcattttaagcccataaaacccttgggttgtggtgatactggcagtgtccatttggtggaactacgaggtacttctatactgtttgctatgaaggcaatggagaagtcaataatgttgaatcgtaacaaggttcaccgagcatgcgctgaacgggaaataatttcacaactggatcatccatttcttcctacgctatacacttcatttgagacttctacacacgtttgtttgataacagacttttgctcaggcggagagttatttgctttgcttgataagcagcctatgaaattcttcaaggaggactctgctaggttctatgctgcagaggttgtcattgccttggaatatcttcactgtctaggtataatttatcgcgaccttaagcctgaaaatattttactccagaaggatggacatattgtcttaacagactttgatttatcatttatggcctcctgtaaaccacagattataaggcatcaatcacctaagaagagaaggagatctagtagtcaaccgccaccaacatttgttgcagaaccagttaatcaatcaaattccttcgttggaaccgaagagtacattgctcctgaaattgttaccggtacaggccacagcagtgctattgattggtgggctcttggtattttgttgtatgagatgctatatggccgcacccctttcagggggaaaaacagacaaagaacattcaccaacattttgcagaaagatctgacctttccaagtagcattccggtgagccttgcagcacggcagttgatcaatgcgttgttgcaaagagaccctgccacacgtttaggatccactactggtgcaaacgaaatcaaacaacatccttttttccgtggaattacatggcctttgatccgttgcatgagccctccaccgttagatgtgcctcttcagcctattggttttgatccacaggccaaggatatatcgtgggaagacgacggggttcttgtaaattcaatggatatggatattttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

957

Amino Acids

106.75

Weight (kDa)

6.37

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 162 - 258 9.8e-21 PAS domain
PAS_3 PF08447 168 - 252 6.6e-09 PAS fold
PAS PF00989 168 - 253 4.5e-08 PAS fold
PAS_9 PF13426 443 - 535 5.5e-20 PAS domain
PAS_3 PF08447 447 - 532 1.9e-06 PAS fold
PAS PF00989 447 - 535 6.6e-07 PAS fold
Pkinase PF00069 623 - 908 2.3e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 624 - 771 1.3e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2333
Acc36I ACCTGC 1 cut(s) 751
AccB7I CCANNNNNTGG 1 cut(s) 1912
AccII CGCG 2 cut(s) 49, 2235
AciI CCGC 6 cut(s) 654, 1082, 1231, 2109, 2378, 2533
AclWI GGATC 7 cut(s) 106, 1310, 2037, 2676, 2689, 2740, 2795
AcoI YGGCCR 2 cut(s) 612, 2530
AcsI RAATTY 7 cut(s) 198, 1323, 1392, 1534, 2147, 2416, 2848
AcuI CTGAAG 4 cut(s) 168, 566, 1170, 2768
AcvI CACGTG 2 cut(s) 1385, 1835
AdeI CACNNNGTG 1 cut(s) 1838
AfaI GTAC 9 cut(s) 72, 109, 779, 891, 1012, 1494, 1927, 2441, 2467
AfiI CCNNNNNNNGG 8 cut(s) 312, 1081, 1120, 1121, 1912, 2544, 2545, 2546
AflII CTTAAG 1 cut(s) 2240
AflIII ACRYGT 3 cut(s) 1382, 2077, 2672
AgeI ACCGGT 1 cut(s) 2462
AhdI GACNNNNNGTC 1 cut(s) 2279
AjiI CACGTC 1 cut(s) 828
AjnI CCWGG 1 cut(s) 1074
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 1513, 1545
AleI CACNNNNGTG 1 cut(s) 2478
AluBI AGCT 6 cut(s) 20, 88, 146, 443, 648, 1657
AluI AGCT 6 cut(s) 20, 88, 146, 443, 648, 1657
Alw26I GTCTC 6 cut(s) 1019, 1143, 1453, 1729, 2060, 2655
AlwI GGATC 7 cut(s) 106, 1310, 2037, 2676, 2689, 2740, 2795
Ama87I CYCGRG 1 cut(s) 1059
AoxI GGCC 8 cut(s) 303, 612, 809, 2310, 2470, 2530, 2738, 2808
ApoI RAATTY 7 cut(s) 198, 1323, 1392, 1534, 2147, 2416, 2848
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AsiGI ACCGGT 1 cut(s) 2462
Asp700I GAANNNNTTC 3 cut(s) 1538, 2150, 2208
AspLEI GCGC 3 cut(s) 49, 1110, 2003
AspS9I GGNCC 3 cut(s) 587, 1228, 1424
AsuNHI GCTAGC 1 cut(s) 929
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 3 cut(s) 587, 1228, 1424
AxyI CCTNAGG 1 cut(s) 1032
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 2681
BanII GRGCYC 2 cut(s) 2500, 2762
BbrPI CACGTG 2 cut(s) 1385, 1835
BbsI GAAGAC 3 cut(s) 443, 1765, 2835
BccI CCATC 8 cut(s) 118, 188, 320, 674, 749, 1475, 1598, 2264
BceAI ACGGC 1 cut(s) 2648
BciT130I CCWGG 1 cut(s) 1076
BclI TGATCA 3 cut(s) 400, 1612, 2640
BcoDI GTCTC 6 cut(s) 1019, 1143, 1453, 1729, 2060, 2655
BfmI CTRYAG 2 cut(s) 1686, 2181
BfrI CTTAAG 1 cut(s) 2240
BfuAI ACCTGC 1 cut(s) 751
BglII AGATCT 3 cut(s) 1744, 2363, 2590
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 1076
Bme18I GGWCC 3 cut(s) 587, 1228, 1424
BmeRI GACNNNNNGTC 1 cut(s) 2279
BmeT110I CYCGRG 1 cut(s) 1059
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 3 cut(s) 587, 1228, 1424
BmiI GGNNCC 5 cut(s) 588, 874, 1229, 2431, 2683
BmrFI CCNGG 1 cut(s) 1076
BmrI ACTGGG 1 cut(s) 648
BmtI GCTAGC 1 cut(s) 933
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 3 cut(s) 443, 1765, 2835
BpmI CTGGAG 1 cut(s) 2246
Bpu10I CCTNAGC 1 cut(s) 2104
BpuEI CTTGAG 1 cut(s) 1753
BsaAI YACGTR 2 cut(s) 1385, 1835
BsaBI GATNNNNATC 3 cut(s) 361, 1129, 1854
BsaI GGTCTC 2 cut(s) 1729, 2655
BsaJI CCNNGG 7 cut(s) 416, 1074, 1258, 1878, 2199, 2725, 2811
BsaWI WCCGGW 3 cut(s) 589, 2462, 2614
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 2353, 2383
Bsc4I CCNNNNNNNGG 8 cut(s) 312, 1081, 1120, 1121, 1912, 2544, 2545, 2546
Bse118I RCCGGY 1 cut(s) 2462
Bse1I ACTGG 6 cut(s) 541, 643, 1900, 2031, 2402, 2695
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 6 cut(s) 64, 452, 940, 1959, 2193, 2442
Bse8I GATNNNNATC 3 cut(s) 361, 1129, 1854
BseBI CCWGG 1 cut(s) 1076
BseDI CCNNGG 7 cut(s) 416, 1074, 1258, 1878, 2199, 2725, 2811
BseJI GATNNNNATC 3 cut(s) 361, 1129, 1854
BseLI CCNNNNNNNGG 8 cut(s) 312, 1081, 1120, 1121, 1912, 2544, 2545, 2546
BseMI GCAATG 6 cut(s) 64, 452, 940, 1959, 2193, 2442
BseMII CTCAG 2 cut(s) 1046, 2118
BseNI ACTGG 6 cut(s) 541, 643, 1900, 2031, 2402, 2695
BseRI GAGGAG 1 cut(s) 1020
Bsh1236I CGCG 2 cut(s) 49, 2235
BshFI GGCC 8 cut(s) 305, 614, 811, 2312, 2472, 2532, 2740, 2810
BshTI ACCGGT 1 cut(s) 2462
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 5 cut(s) 275, 590, 962, 2463, 2615
BslFI GGGAC 2 cut(s) 600, 1241
BslI CCNNNNNNNGG 8 cut(s) 312, 1081, 1120, 1121, 1912, 2544, 2545, 2546
BsmAI GTCTC 6 cut(s) 1019, 1143, 1453, 1729, 2060, 2655
BsmFI GGGAC 2 cut(s) 600, 1241
BsmI GAATGC 3 cut(s) 128, 762, 2610
BsnI GGCC 8 cut(s) 305, 614, 811, 2312, 2472, 2532, 2740, 2810
Bso31I GGTCTC 2 cut(s) 1729, 2655
BsoBI CYCGRG 1 cut(s) 1059
Bsp1286I GDGCHC 2 cut(s) 2500, 2762
Bsp1407I TGTACA 2 cut(s) 889, 1492
Bsp68I TCGCGA 1 cut(s) 2235
BspACI CCGC 6 cut(s) 654, 1082, 1231, 2109, 2378, 2533
BspANI GGCC 8 cut(s) 305, 614, 811, 2312, 2472, 2532, 2740, 2810
BspCNI CTCAG 2 cut(s) 1045, 2117
BspFNI CGCG 2 cut(s) 49, 2235
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 5 cut(s) 588, 874, 1229, 2431, 2683
BspMAI CTGCAG 2 cut(s) 1690, 2185
BspMI ACCTGC 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 933
BspPI GGATC 7 cut(s) 106, 1310, 2037, 2676, 2689, 2740, 2795
BspQI GCTCTTC 2 cut(s) 668, 951
BspTI CTTAAG 1 cut(s) 2240
BspTNI GGTCTC 2 cut(s) 1729, 2655
BsrDI GCAATG 6 cut(s) 64, 452, 940, 1959, 2193, 2442
BsrFI RCCGGY 1 cut(s) 2462
BsrGI TGTACA 2 cut(s) 889, 1492
BsrI ACTGG 6 cut(s) 541, 643, 1900, 2031, 2402, 2695
BssAI RCCGGY 1 cut(s) 2462
BssECI CCNNGG 7 cut(s) 416, 1074, 1258, 1878, 2199, 2725, 2811
BssT1I CCWWGG 5 cut(s) 416, 1258, 1878, 2199, 2811
Bst2UI CCWGG 1 cut(s) 1076
Bst4CI ACNGT 9 cut(s) 572, 709, 898, 1447, 1492, 1497, 1938, 2216, 2769
Bst6I CTCTTC 7 cut(s) 144, 550, 668, 951, 2348, 2430, 2787
BstAFI CTTAAG 1 cut(s) 2240
BstAPI GCANNNNNTGC 1 cut(s) 1555
BstAUI TGTACA 2 cut(s) 889, 1492
BstBAI YACGTR 2 cut(s) 1385, 1835
BstC8I GCNNGC 6 cut(s) 232, 514, 931, 1084, 1157, 1999
BstDEI CTNAG 4 cut(s) 1032, 1512, 2104, 2349
BstDSI CCRYGG 1 cut(s) 2725
BstFNI CGCG 2 cut(s) 49, 2235
BstHHI GCGC 3 cut(s) 49, 1110, 2003
BstMAI GTCTC 6 cut(s) 1019, 1143, 1453, 1729, 2060, 2655
BstMWI GCNNNNNNNGC 9 cut(s) 173, 176, 248, 336, 1152, 1555, 1949, 2134, 2785
BstNI CCWGG 1 cut(s) 1076
BstNSI RCATGY 2 cut(s) 922, 2001
BstSCI CCNGG 1 cut(s) 1074
BstSFI CTRYAG 2 cut(s) 1686, 2181
BstUI CGCG 2 cut(s) 49, 2235
BstV2I GAAGAC 3 cut(s) 443, 1765, 2835
BstX2I RGATCY 4 cut(s) 1744, 2363, 2590, 2681
BstXI CCANNNNNNTGG 2 cut(s) 1604, 2270
BstYI RGATCY 4 cut(s) 1744, 2363, 2590, 2681
Bsu36I CCTNAGG 1 cut(s) 1032
BsuRI GGCC 8 cut(s) 305, 614, 811, 2312, 2472, 2532, 2740, 2810
BtgI CCRYGG 1 cut(s) 2725
BtrI CACGTC 1 cut(s) 828
BtsI GCAGTG 5 cut(s) 162, 523, 1683, 1906, 2485
BtsIMutI CAGTG 6 cut(s) 162, 523, 1683, 1906, 2212, 2485
BtuMI TCGCGA 1 cut(s) 2235
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 6 cut(s) 232, 514, 931, 1084, 1157, 1999
CciI TCATGA 1 cut(s) 952
CfoI GCGC 3 cut(s) 49, 1110, 2003
Cfr10I RCCGGY 1 cut(s) 2462
Cfr13I GGNCC 3 cut(s) 587, 1228, 1424
CseI GACGC 1 cut(s) 854
Csp6I GTAC 9 cut(s) 71, 108, 778, 890, 1011, 1493, 1926, 2440, 2466
CspAI ACCGGT 1 cut(s) 2462
CviAII CATG 9 cut(s) 392, 919, 953, 970, 1555, 1616, 1998, 2736, 2755
CviQI GTAC 9 cut(s) 71, 108, 778, 890, 1011, 1493, 1926, 2440, 2466
DdeI CTNAG 4 cut(s) 1032, 1512, 2104, 2349
DraIII CACNNNGTG 1 cut(s) 1838
DriI GACNNNNNGTC 1 cut(s) 2279
EaeI YGGCCR 2 cut(s) 612, 2530
Eam1104I CTCTTC 7 cut(s) 144, 550, 668, 951, 2348, 2430, 2787
Eam1105I GACNNNNNGTC 1 cut(s) 2279
EarI CTCTTC 7 cut(s) 144, 550, 668, 951, 2348, 2430, 2787
EciI GGCGGA 1 cut(s) 2124
Eco130I CCWWGG 5 cut(s) 416, 1258, 1878, 2199, 2811
Eco24I GRGCYC 2 cut(s) 2500, 2762
Eco31I GGTCTC 2 cut(s) 1729, 2655
Eco47I GGWCC 3 cut(s) 587, 1228, 1424
Eco57I CTGAAG 4 cut(s) 168, 566, 1170, 2768
Eco72I CACGTG 2 cut(s) 1385, 1835
Eco81I CCTNAGG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 1059
EcoO109I RGGNCCY 1 cut(s) 1424
EcoRI GAATTC 1 cut(s) 1323
EcoRII CCWGG 1 cut(s) 1074
EcoT14I CCWWGG 5 cut(s) 416, 1258, 1878, 2199, 2811
EcoT38I GRGCYC 2 cut(s) 2500, 2762
ErhI CCWWGG 5 cut(s) 416, 1258, 1878, 2199, 2811
FaeI CATG 9 cut(s) 395, 922, 956, 973, 1558, 1619, 2001, 2739, 2758
FalI AAGNNNNNCTT 2 cut(s) 1143, 1175
FaqI GGGAC 2 cut(s) 600, 1241
FatI CATG 9 cut(s) 391, 918, 952, 969, 1554, 1615, 1997, 2735, 2754
FauI CCCGC 1 cut(s) 1075
FbaI TGATCA 3 cut(s) 400, 1612, 2640
FriOI GRGCYC 2 cut(s) 2500, 2762
GlaI GCGC 3 cut(s) 48, 1109, 2002
GsuI CTGGAG 1 cut(s) 2246
HaeIII GGCC 8 cut(s) 305, 614, 811, 2312, 2472, 2532, 2740, 2810
HapII CCGG 5 cut(s) 275, 590, 962, 2463, 2615
HgaI GACGC 1 cut(s) 854
HhaI GCGC 3 cut(s) 49, 1110, 2003
Hin1II CATG 9 cut(s) 395, 922, 956, 973, 1558, 1619, 2001, 2739, 2758
Hin6I GCGC 3 cut(s) 47, 1108, 2001
HinP1I GCGC 3 cut(s) 47, 1108, 2001
HincII GTYRAC 2 cut(s) 1699, 2375
HindII GTYRAC 2 cut(s) 1699, 2375
HinfI GANTC 9 cut(s) 152, 206, 281, 362, 383, 697, 1027, 1975, 2162
HpaI GTTAAC 1 cut(s) 1699
HpaII CCGG 5 cut(s) 275, 590, 962, 2463, 2615
Hpy166II GTNNAC 8 cut(s) 780, 825, 1013, 1574, 1699, 1990, 2321, 2375
Hpy188III TCNNGA 8 cut(s) 953, 1328, 1364, 1427, 1721, 2234, 2263, 2450
Hpy8I GTNNAC 8 cut(s) 780, 825, 1013, 1574, 1699, 1990, 2321, 2375
Hpy99I CGWCG 1 cut(s) 2837
HpyCH4III ACNGT 9 cut(s) 572, 709, 898, 1447, 1492, 1497, 1938, 2216, 2769
HpyCH4IV ACGT 7 cut(s) 189, 827, 910, 1384, 1834, 2079, 2674
HpyF10VI GCNNNNNNNGC 9 cut(s) 173, 176, 248, 336, 1152, 1555, 1949, 2134, 2785
HpyF3I CTNAG 4 cut(s) 1032, 1512, 2104, 2349
HpySE526I ACGT 7 cut(s) 189, 827, 910, 1384, 1834, 2079, 2674
Hsp92II CATG 9 cut(s) 395, 922, 956, 973, 1558, 1619, 2001, 2739, 2758
HspAI GCGC 3 cut(s) 47, 1108, 2001
Ksp22I TGATCA 3 cut(s) 400, 1612, 2640
KspAI GTTAAC 1 cut(s) 1699
LguI GCTCTTC 2 cut(s) 668, 951
LmnI GCTCC 2 cut(s) 878, 2452
MaeII ACGT 7 cut(s) 189, 827, 910, 1384, 1834, 2079, 2674
MaeIII GTNAC 7 cut(s) 185, 539, 709, 828, 1559, 1979, 2458
MfeI CAATTG 1 cut(s) 1598
MflI RGATCY 4 cut(s) 1744, 2363, 2590, 2681
MhlI GDGCHC 2 cut(s) 2500, 2762
MlsI TGGCCA 1 cut(s) 614
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 5 cut(s) 161, 200, 392, 1021, 2156
MmeI TCCRAC 2 cut(s) 46, 2407
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 3 cut(s) 1538, 2150, 2208
MscI TGGCCA 1 cut(s) 614
MseI TTAA 9 cut(s) 117, 300, 978, 1499, 1698, 1863, 2241, 2285, 2406
MslI CAYNNNNRTG 4 cut(s) 118, 1569, 2478, 2615
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 2 cut(s) 20, 146
MspCI CTTAAG 1 cut(s) 2240
MspI CCGG 5 cut(s) 275, 590, 962, 2463, 2615
MspR9I CCNGG 1 cut(s) 1076
MunI CAATTG 1 cut(s) 1598
Mva1269I GAATGC 3 cut(s) 128, 762, 2610
MvaI CCWGG 1 cut(s) 1076
MvnI CGCG 2 cut(s) 49, 2235
MwoI GCNNNNNNNGC 9 cut(s) 173, 176, 248, 336, 1152, 1555, 1949, 2134, 2785
NheI GCTAGC 1 cut(s) 929
NlaIII CATG 9 cut(s) 395, 922, 956, 973, 1558, 1619, 2001, 2739, 2758
NlaIV GGNNCC 5 cut(s) 588, 874, 1229, 2431, 2683
NmuCI GTSAC 4 cut(s) 185, 709, 828, 1559
NruI TCGCGA 1 cut(s) 2235
NspI RCATGY 2 cut(s) 922, 2001
OliI CACNNNNGTG 1 cut(s) 2478
PaeI GCATGC 1 cut(s) 2001
PagI TCATGA 1 cut(s) 952
PciSI GCTCTTC 2 cut(s) 668, 951
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 2430
PctI GAATGC 3 cut(s) 128, 762, 2610
PdmI GAANNNNTTC 3 cut(s) 1538, 2150, 2208
PfeI GAWTC 4 cut(s) 281, 362, 697, 1975
PflMI CCANNNNNTGG 1 cut(s) 1912
PinAI ACCGGT 1 cut(s) 2462
PleI GAGTC 5 cut(s) 160, 200, 391, 1021, 2156
PmaCI CACGTG 2 cut(s) 1385, 1835
PmlI CACGTG 2 cut(s) 1385, 1835
PpsI GAGTC 5 cut(s) 160, 200, 391, 1021, 2156
Ppu21I YACGTR 2 cut(s) 1385, 1835
PpuMI RGGWCCY 1 cut(s) 1424
PsiI TTATAA 1 cut(s) 2333
Psp5II RGGWCCY 1 cut(s) 1424
Psp6I CCWGG 1 cut(s) 1074
PspCI CACGTG 2 cut(s) 1385, 1835
PspGI CCWGG 1 cut(s) 1074
PspN4I GGNNCC 5 cut(s) 588, 874, 1229, 2431, 2683
PspPI GGNCC 3 cut(s) 587, 1228, 1424
PspPPI RGGWCCY 1 cut(s) 1424
PstI CTGCAG 2 cut(s) 1690, 2185
PsuI RGATCY 4 cut(s) 1744, 2363, 2590, 2681
PvuII CAGCTG 2 cut(s) 20, 146
RruI TCGCGA 1 cut(s) 2235
RsaI GTAC 9 cut(s) 72, 109, 779, 891, 1012, 1494, 1927, 2441, 2467
RsaNI GTAC 9 cut(s) 71, 108, 778, 890, 1011, 1493, 1926, 2440, 2466
RseI CAYNNNNRTG 4 cut(s) 118, 1569, 2478, 2615
SapI GCTCTTC 2 cut(s) 668, 951
SaqAI TTAA 9 cut(s) 117, 300, 978, 1499, 1698, 1863, 2241, 2285, 2406
Sau96I GGNCC 3 cut(s) 587, 1228, 1424
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 5 cut(s) 161, 200, 392, 1021, 2156
ScrFI CCNGG 1 cut(s) 1076
SduI GDGCHC 2 cut(s) 2500, 2762
SfcI CTRYAG 2 cut(s) 1686, 2181
SinI GGWCC 3 cut(s) 587, 1228, 1424
SmiMI CAYNNNNRTG 4 cut(s) 118, 1569, 2478, 2615
SmlI CTYRAG 2 cut(s) 1732, 2240
SmoI CTYRAG 2 cut(s) 1732, 2240
SphI GCATGC 1 cut(s) 2001
SsiI CCGC 6 cut(s) 654, 1082, 1231, 2109, 2378, 2533
SspI AATATT 2 cut(s) 1583, 2254
StyD4I CCNGG 1 cut(s) 1074
StyI CCWWGG 5 cut(s) 416, 1258, 1878, 2199, 2811
TaaI ACNGT 9 cut(s) 572, 709, 898, 1447, 1492, 1497, 1938, 2216, 2769
TaiI ACGT 7 cut(s) 192, 830, 913, 1387, 1837, 2082, 2677
TaqI TCGA 2 cut(s) 132, 850
TatI WGTACW 7 cut(s) 70, 107, 777, 889, 1010, 1492, 2439
TauI GCSGC 1 cut(s) 2535
TfiI GAWTC 4 cut(s) 281, 362, 697, 1975
Tru1I TTAA 9 cut(s) 117, 300, 978, 1499, 1698, 1863, 2241, 2285, 2406
Tru9I TTAA 9 cut(s) 117, 300, 978, 1499, 1698, 1863, 2241, 2285, 2406
TscAI CASTG 6 cut(s) 169, 523, 1690, 1906, 2219, 2485
TseFI GTSAC 4 cut(s) 185, 709, 828, 1559
Tsp45I GTSAC 4 cut(s) 185, 709, 828, 1559
TspDTI ATGAA 9 cut(s) 102, 621, 969, 986, 1576, 1748, 1961, 2049, 2159
TspGWI ACGGA 5 cut(s) 236, 827, 1388, 2714, 2738
TspRI CASTG 6 cut(s) 169, 523, 1690, 1906, 2219, 2485
Van91I CCANNNNNTGG 1 cut(s) 1912
Vha464I CTTAAG 1 cut(s) 2240
VpaK11BI GGWCC 3 cut(s) 587, 1228, 1424
XapI RAATTY 7 cut(s) 198, 1323, 1392, 1534, 2147, 2416, 2848
XbaI TCTAGA 1 cut(s) 1363
XceI RCATGY 2 cut(s) 922, 2001
XcmI CCANNNNNNNNNTGG 2 cut(s) 1746, 1876
XmnI GAANNNNTTC 3 cut(s) 1538, 2150, 2208
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.