Rmu_ssc0000134.1_g000004

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000134.1
OG0014879
Physical Location & Seq
Reverse (-)
28902 .. 31277
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
atgtatgagaataataatcacctcttggcagagttggatgacaatgaggacgatgaggctgaatcgaggcgtagaggagcagttcctggccatatagttattaattgtcttcgacaagaagctggatataatctatacatggactactttgctgaggttccgatattcggagaagcaaaatttcgcagacgatttcgaataagaaaaagtttatttcatcaaattgcggaagccgtcaaagatcaccacaatttctttgtggaacaacgcgatggtattggtaagctcggattatcatctttgcaaaaatttacagctatttttcgaatgcttgcatatggtgtaccatctgatgctcttgatgaatatttaaaaattggctccaacaaagacatcaatgtgcttgaagcatctcacctatttgcaaatcttgcggaaggtaaatctcctcccgttaattgtaagattctagaaaaagattatgacaccggttattatttagccgatggtatatatcctaagtggtctacactagtgcaaactattcatgatcctcaaggtccaaaaaaagtattgtttgccaaaaaacaagagtcgtgtcgaaaggatgttgaacgagcatttggagttcttcaatcacgttgggcagttgtcaagggaccagcacgtttttggaataaatgtgttttacatgatataatgactacatgcaacataatgcataacatgataatcgaagatgagcgtgatctaagtgctccaataaatgatttcaatccagcccctgcattatctgttgagttggattctatcaaaggtgttaatcaaaagaaagataaagtatgggaaagaataactgatttgtggaataaggataaggatgaacaccagatgcgaagcgccaagtctcttcaaagtcgattttctgatcttaactattgcgtaagcaaatttcgtggttcacttcgccaggtggaaaatcggaatcaaagtggtgcttcagagaaagatatttatacccaggcaaaacaacatctattggatgatcctaactatacaaagaagaaacttcaatttgatcatgtgtggcctattctcaaggatgctggaaaatggaccgataatgacgaacaagagctgtttagtgatgaacttgcctcacctcatcggcctattggtgtaaagaaagcaaagctgaaaagaaaagagttgaatgagaagactaagattgttcaacaagtgaaagaatccaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

418

Amino Acids

48.27

Weight (kDa)

8.31

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 126 - 251 5.4e-58 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 527
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 227, 434
AclWI GGATC 2 cut(s) 545, 1040
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 3 cut(s) 179, 308, 950
AcuI CTGAAG 1 cut(s) 984
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 167
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 8 cut(s) 407, 614, 635, 775, 914, 1073, 1213, 1235
AhlI ACTAGT 1 cut(s) 532
AjnI CCWGG 3 cut(s) 85, 969, 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 5 cut(s) 122, 286, 317, 1138, 1195
AluI AGCT 5 cut(s) 122, 286, 317, 1138, 1195
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 1 cut(s) 912
AlwI GGATC 2 cut(s) 545, 1040
AlwNI CAGNNNCTG 2 cut(s) 86, 785
AoxI GGCC 3 cut(s) 88, 1088, 1169
ApoI RAATTY 3 cut(s) 179, 308, 950
AseI ATTAAT 1 cut(s) 102
AsiGI ACCGGT 1 cut(s) 488
AspLEI GCGC 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 560, 659, 1116
AsuHPI GGTGA 4 cut(s) 11, 236, 407, 1152
AsuII TTCGAA 2 cut(s) 196, 325
AvaII GGWCC 3 cut(s) 560, 659, 1116
BalI TGGCCA 1 cut(s) 90
BbsI GAAGAC 2 cut(s) 101, 1226
Bbv12I GWGCWC 1 cut(s) 760
BbvCI CCTCAGC 1 cut(s) 153
BccI CCATC 3 cut(s) 266, 355, 500
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 87, 971, 1022
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 912
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 2 cut(s) 470, 533
BfoI RGCGCY 1 cut(s) 903
Bme1390I CCNGG 3 cut(s) 87, 971, 1022
Bme18I GGWCC 3 cut(s) 560, 659, 1116
BmgT120I GGNCC 3 cut(s) 560, 659, 1116
BmiI GGNNCC 3 cut(s) 159, 382, 660
BmrFI CCNGG 3 cut(s) 87, 971, 1022
BmsI GCATC 4 cut(s) 343, 419, 882, 1093
BpiI GAAGAC 2 cut(s) 101, 1226
Bpu10I CCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 2 cut(s) 196, 325
BpuEI CTTGAG 2 cut(s) 540, 1082
BsaBI GATNNNNATC 2 cut(s) 295, 774
BsaJI CCNNGG 1 cut(s) 1020
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 488
Bse8I GATNNNNATC 2 cut(s) 295, 774
BseBI CCWGG 3 cut(s) 87, 971, 1022
BseDI CCNNGG 1 cut(s) 1020
BseGI GGATG 5 cut(s) 43, 613, 886, 1048, 1108
BseJI GATNNNNATC 2 cut(s) 295, 774
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 2 cut(s) 90, 438
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 90, 1090, 1171
BshTI ACCGGT 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 912
BsmFI GGGAC 1 cut(s) 672
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 3 cut(s) 90, 1090, 1171
Bsp119I TTCGAA 2 cut(s) 196, 325
Bsp1286I GDGCHC 1 cut(s) 760
Bsp143I GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
BspACI CCGC 2 cut(s) 227, 434
BspANI GGCC 3 cut(s) 90, 1090, 1171
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 159, 382, 660
BspPI GGATC 2 cut(s) 545, 1040
BspT104I TTCGAA 2 cut(s) 196, 325
BsrFI RCCGGY 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 1020
BssMI GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
Bst2UI CCWGG 3 cut(s) 87, 971, 1022
Bst6I CTCTTC 1 cut(s) 915
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBI TTCGAA 2 cut(s) 196, 325
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 153, 519, 752, 1224
BstF5I GGATG 5 cut(s) 43, 613, 886, 1048, 1108
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 903
BstHHI GCGC 1 cut(s) 902
BstKTI GATC 6 cut(s) 244, 553, 751, 931, 1048, 1081
BstMAI GTCTC 1 cut(s) 912
BstMBI GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 3 cut(s) 87, 971, 1022
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 3 cut(s) 85, 969, 1020
BstUI CGCG 1 cut(s) 270
BstV2I GAAGAC 2 cut(s) 101, 1226
BsuRI GGCC 3 cut(s) 90, 1090, 1171
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 5 cut(s) 43, 613, 886, 1048, 1108
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 2 cut(s) 86, 785
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 902
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 3 cut(s) 560, 659, 1116
Csp6I GTAC 1 cut(s) 344
CspAI ACCGGT 1 cut(s) 488
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 6 cut(s) 139, 548, 692, 708, 727, 1082
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 4 cut(s) 153, 519, 752, 1224
DpnI GATC 6 cut(s) 243, 552, 750, 930, 1047, 1080
DpnII GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
DraI TTTAAA 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Eco47I GGWCC 3 cut(s) 560, 659, 1116
Eco57I CTGAAG 1 cut(s) 984
EcoRII CCWGG 3 cut(s) 85, 969, 1020
EcoT22I ATGCAT 1 cut(s) 723
FaeI CATG 6 cut(s) 142, 551, 695, 711, 730, 1085
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FaqI GGGAC 1 cut(s) 672
FatI CATG 6 cut(s) 138, 547, 691, 707, 726, 1081
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 1 cut(s) 527
FokI GGATG 5 cut(s) 50, 620, 893, 1055, 1115
FspBI CTAG 2 cut(s) 470, 533
GlaI GCGC 1 cut(s) 901
HaeII RGCGCY 1 cut(s) 903
HaeIII GGCC 3 cut(s) 90, 1090, 1171
HapII CCGG 1 cut(s) 489
HhaI GCGC 1 cut(s) 902
Hin1II CATG 6 cut(s) 142, 551, 695, 711, 730, 1085
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HinfI GANTC 6 cut(s) 62, 466, 593, 806, 985, 1247
HpaII CCGG 1 cut(s) 489
HphI GGTGA 4 cut(s) 11, 236, 407, 1152
Hpy166II GTNNAC 3 cut(s) 344, 528, 962
Hpy188I TCNGA 7 cut(s) 162, 170, 290, 352, 928, 984, 1003
Hpy188III TCNNGA 3 cut(s) 359, 470, 548
Hpy8I GTNNAC 3 cut(s) 344, 528, 962
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 2 cut(s) 640, 667
HpyCH4V TGCA 7 cut(s) 304, 335, 425, 538, 711, 721, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 4 cut(s) 153, 519, 752, 1224
HpySE526I ACGT 2 cut(s) 640, 667
Hsp92II CATG 6 cut(s) 142, 551, 695, 711, 730, 1085
HspAI GCGC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
LmnI GCTCC 3 cut(s) 77, 386, 763
LweI GCATC 4 cut(s) 343, 419, 882, 1093
MaeI CTAG 2 cut(s) 470, 533
MaeII ACGT 2 cut(s) 640, 667
MalI GATC 6 cut(s) 243, 552, 750, 930, 1047, 1080
MboI GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
MboII GAAGA 6 cut(s) 101, 623, 749, 902, 1075, 1231
MhlI GDGCHC 1 cut(s) 760
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 9 cut(s) 103, 179, 222, 250, 308, 375, 457, 950, 1073
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 3 cut(s) 15, 408, 783
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 723
MscI TGGCCA 1 cut(s) 90
MseI TTAA 5 cut(s) 102, 371, 456, 822, 933
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 3 cut(s) 87, 971, 1022
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 3 cut(s) 87, 971, 1022
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 431
NdeI CATATG 1 cut(s) 337
NdeII GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
NlaIII CATG 6 cut(s) 142, 551, 695, 711, 730, 1085
NlaIV GGNNCC 3 cut(s) 159, 382, 660
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 2 cut(s) 196, 325
PagI TCATGA 1 cut(s) 547
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 5 cut(s) 62, 466, 806, 985, 1247
PinAI ACCGGT 1 cut(s) 488
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 3 cut(s) 85, 969, 1020
PspGI CCWGG 3 cut(s) 85, 969, 1020
PspN4I GGNNCC 3 cut(s) 159, 382, 660
PspPI GGNCC 3 cut(s) 560, 659, 1116
PstNI CAGNNNCTG 2 cut(s) 86, 785
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 5 cut(s) 102, 371, 456, 822, 933
Sau3AI GATC 6 cut(s) 241, 550, 748, 928, 1045, 1078
Sau96I GGNCC 3 cut(s) 560, 659, 1116
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 87, 971, 1022
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 4 cut(s) 343, 419, 882, 1093
SfuI TTCGAA 2 cut(s) 196, 325
SinI GGWCC 3 cut(s) 560, 659, 1116
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 555, 1097
SmoI CTYRAG 2 cut(s) 555, 1097
SpeI ACTAGT 1 cut(s) 532
Sse9I AATT 9 cut(s) 103, 179, 222, 250, 308, 375, 457, 950, 1073
SsiI CCGC 2 cut(s) 227, 434
SspI AATATT 1 cut(s) 368
SspMI CTAG 2 cut(s) 470, 533
StyD4I CCNGG 3 cut(s) 85, 969, 1020
TaiI ACGT 2 cut(s) 643, 670
TaqI TCGA 7 cut(s) 65, 112, 196, 325, 601, 735, 919
TaqII GACCGA 1 cut(s) 1133
TasI AATT 9 cut(s) 103, 179, 222, 250, 308, 375, 457, 950, 1073
TfiI GAWTC 5 cut(s) 62, 466, 806, 985, 1247
Tru1I TTAA 5 cut(s) 102, 371, 456, 822, 933
Tru9I TTAA 5 cut(s) 102, 371, 456, 822, 933
TspDTI ATGAA 5 cut(s) 206, 378, 536, 897, 1164
VpaK11BI GGWCC 3 cut(s) 560, 659, 1116
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 3 cut(s) 179, 308, 950
XbaI TCTAGA 1 cut(s) 469
XceI RCATGY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 2 cut(s) 470, 533
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.