Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000197.1

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Reverse (-)

101976 .. 102707

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggtctgtcctgactatgtctcatctcgatccccgtatcgcacagtgttagcattaaagccaccctcaagtgcaagaggtatgattgctacagctgagcagccactatgtgcatatcatgtggacgattggattcatccttcacagctgcccataagatatgctggatattcatcttgtttccgcaaggaagcgggttcacatggtcgagataccttgggaatttttagggttcatcagtttgaaaaagttgaacagttttgtatgacaagcccaaatggccaggactcttgggaaatgctcgaggaaatgatcaagaactctgaggaattttatcagcagctcaaacttccttatcgtgttgtgtccatcgtttctggtgctttgaatgatgcggcagcaaagaagtatgatctggaagggtggtttcctgcatctcagacatacagggagctcgtctcatgttcaaactgtacagactaccaatcaagaaaattaggaattcgatttgggcagaacaagagcaatgagcagacgaagcaatacgttcacatgttgaactccactcttacagcaactgagagaaccatttgctgcattcttgaaaactatcagagggaagatggtgttgaggtaccagaagtcttacgaaactacatgggtggagtgtccttcctaccattcaagaacaaaccagcccctgaagtcaaagggaagaaatcaaaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

243

Amino Acids

27.64

Weight (kDa)

8.34

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	28 - 204	2e-41	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	634
AciI	CCGC	3 cut(s)	184, 194, 395
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	3 cut(s)	222, 329, 501
AcuI	CTGAAG	1 cut(s)	723
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	475, 636
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	7 cut(s)	245, 254, 388, 468, 559, 605, 685
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	95, 148, 343, 454
AluI	AGCT	4 cut(s)	95, 148, 343, 454
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	25, 463
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	2 cut(s)	578, 701
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	280, 726
ApeKI	GCWGC	5 cut(s)	100, 148, 340, 398, 594
ApoI	RAATTY	3 cut(s)	222, 329, 501
Asp718I	GGTACC	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	112, 135, 352, 410, 581
BccI	CCATC	2 cut(s)	377, 617
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	25, 463
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	279
BisI	GCNGC	6 cut(s)	101, 149, 341, 396, 399, 595
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	6 cut(s)	102, 150, 342, 397, 400, 596
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	382, 443
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	4 cut(s)	87, 315, 452, 570
BseXI	GCAGC	5 cut(s)	112, 135, 352, 410, 581
BshFI	GGCC	2 cut(s)	282, 728
BshNI	GGYRCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	25, 463
BsmBI	CGTCTC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	282, 728
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	29, 312, 412
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	184, 194, 395
BspANI	GGCC	2 cut(s)	282, 728
BspCNI	CTCAG	4 cut(s)	88, 316, 451, 571
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	29, 312, 412
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	46, 258, 473
BstAUI	TGTACA	1 cut(s)	473
BstDEI	CTNAG	4 cut(s)	96, 324, 438, 579
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	32, 315, 415
BstMAI	GTCTC	2 cut(s)	25, 463
BstMBI	GATC	3 cut(s)	29, 312, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 538
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	112, 135, 352, 410, 581
BsuRI	GGCC	2 cut(s)	282, 728
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	51
CaiI	CAGNNNCTG	2 cut(s)	578, 701
Csp6I	GTAC	2 cut(s)	474, 635
CviAII	CATG	5 cut(s)	119, 203, 462, 553, 658
CviQI	GTAC	2 cut(s)	474, 635
DdeI	CTNAG	4 cut(s)	96, 324, 438, 579
DpnI	GATC	3 cut(s)	31, 314, 414
DpnII	GATC	3 cut(s)	29, 312, 412
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	728
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	5 cut(s)	122, 206, 465, 556, 661
FatI	CATG	5 cut(s)	118, 202, 461, 552, 657
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	101, 149, 341, 396, 399, 595
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	6 cut(s)	101, 149, 341, 396, 399, 595
GluI	GCNGC	6 cut(s)	101, 149, 341, 396, 399, 595
HaeIII	GGCC	2 cut(s)	282, 728
Hin1II	CATG	5 cut(s)	122, 206, 465, 556, 661
HinfI	GANTC	2 cut(s)	133, 287
Hpy166II	GTNNAC	3 cut(s)	124, 200, 550
Hpy188I	TCNGA	3 cut(s)	325, 441, 615
Hpy188III	TCNNGA	8 cut(s)	11, 27, 209, 316, 416, 489, 602, 685
Hpy8I	GTNNAC	3 cut(s)	124, 200, 550
HpyAV	CCTTC	3 cut(s)	150, 413, 682
HpyCH4III	ACNGT	3 cut(s)	46, 258, 473
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	4 cut(s)	74, 113, 434, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 538
HpyF3I	CTNAG	4 cut(s)	96, 324, 438, 579
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	5 cut(s)	122, 206, 465, 556, 661
KpnI	GGTACC	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	29, 312, 412
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	5 cut(s)	112, 135, 352, 410, 581
LweI	GCATC	2 cut(s)	382, 443
MaeII	ACGT	1 cut(s)	546
MalI	GATC	3 cut(s)	31, 314, 414
MboI	GATC	3 cut(s)	29, 312, 412
MboII	GAAGA	2 cut(s)	632, 727
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	4 cut(s)	222, 329, 494, 501
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	71, 76, 298, 319, 609, 625
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	95, 148
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	279, 538
NdeII	GATC	3 cut(s)	29, 312, 412
NlaIII	CATG	5 cut(s)	122, 206, 465, 556, 661
NlaIV	GGNNCC	1 cut(s)	636
NspI	RCATGY	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	728
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	6 cut(s)	102, 150, 342, 397, 400, 596
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	636
PspXI	VCTCGAGB	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	578, 701
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	95, 148
RsaI	GTAC	2 cut(s)	475, 636
RsaNI	GTAC	2 cut(s)	474, 635
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	6 cut(s)	101, 149, 341, 396, 399, 595
Sau3AI	GATC	3 cut(s)	29, 312, 412
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	82, 97, 150, 218, 345, 456, 549, 636
SfaNI	GCATC	2 cut(s)	382, 443
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	67, 302
SmoI	CTYRAG	2 cut(s)	67, 302
Sse9I	AATT	4 cut(s)	222, 329, 494, 501
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	3 cut(s)	184, 194, 395
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	46, 258, 473
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	28, 208, 303, 505
TasI	AATT	4 cut(s)	222, 329, 494, 501
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	5 cut(s)	100, 148, 340, 398, 594
TspDTI	ATGAA	3 cut(s)	125, 162, 224
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	17
XapI	RAATTY	3 cut(s)	222, 329, 501
XceI	RCATGY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.