Rmu_ssc0000201.1_g000001

Small acidic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000201.1
OG0003825
Physical Location & Seq
Forward (+)
1 .. 4656
4656 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1343 bp
ggagtcctgagcataataacagctctagcccaaaacttgcaatgggagatcctggaaaagtctctgaacatcaaccgagaaggatagatgattggagagaattaaatagggattcagagaggagctattgtggaagaagcagtgattcctacaggcattctgataggcagtccagaaattcaaagggctactatgggcaggctgactacatcaaaaacgacaagcatgcagaagatgaagaaagaactaatcagaagttatcttctcgttcggatagggaatcaaggggcagtgctcattttgataatgttaggtcaagaaactattcacgacatttcgacaaaaattctcgtgataaatatgatggttctgaacataggagcaaggacaaagagagaggatctaaatttcttgagtaccagaaatataaagatgactcattgtcagaaagagttggatctggtagaagtcatggacatgtcgaagatatggaaagggagaaagataggcataaagttgacagagattctcaggatgagaaaagagatcatcgtaggagtttgggatattttagaagtgaacgaaatctctcctatgaagaatcgagggggcatcgcagtggctcaatttccaggagagatgatagtaaacatcgcgagagtgaaggttataagagtgatttgaaggaaatggatgatgaaaagcttgcgagagatcaaaggaagaaatatgatgatattgaaactaagaggagcaaggaccgagtcattaaagagccaacagagcgttctgataatgaagataaatttaggggtgaagatcaagaatctgctgcgaaacgaccaaagttttttaacctggagaagggcattgctggtcggaaagatgtttccaagttcacaactacatctgatggaagagagtcgtcaagttccaagcaagttcaagatggtaaaatggagaatgacataaatgctgcaaaagttgctgcaatgaaagctgctgaattggttaataggaaccttgctggtgcgggtcctgtgggttgcatgactgctgaccaaaagaaaaagctgctgtggggcaacaaaaagaacacaactgcggaagaggctggtcaccgttgggacacggctttgttccctgaccgggaaagacaagaaaaattcaaaaaactcatgggtgtgaaggccgaattgaaggtggagcacagccccgacaaccaagagggcaccaatcttctcagagccgagaagcagaaggaactccagcaggatttggagaagcagtatacagctggactgcgaagaagagatggccgcactgttggtttaggtctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

446

Amino Acids

51.73

Weight (kDa)

9.26

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMAP PF15477 375 - 445 2.6e-17 Small acidic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AccB1I GGYRCC 1 cut(s) 1231
AccI GTMKAC 1 cut(s) 1291
AccII CGCG 1 cut(s) 656
AciI CCGC 3 cut(s) 1033, 1105, 1320
AclWI GGATC 3 cut(s) 43, 408, 465
AcoI YGGCCR 1 cut(s) 1317
AcsI RAATTY 5 cut(s) 177, 345, 406, 805, 1165
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 864, 1149
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 6 cut(s) 182, 684, 742, 946, 1170, 1200
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 3 cut(s) 51, 631, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AluBI AGCT 6 cut(s) 23, 125, 705, 1000, 1074, 1297
AluI AGCT 6 cut(s) 23, 125, 705, 1000, 1074, 1297
Alw21I GWGCWC 2 cut(s) 297, 1211
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 3 cut(s) 43, 408, 465
AoxI GGCC 2 cut(s) 1190, 1317
ApeKI GCWGC 5 cut(s) 832, 976, 988, 1000, 1074
ApoI RAATTY 5 cut(s) 177, 345, 406, 805, 1165
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 759, 1036
AsuC2I CCSGG 1 cut(s) 1150
AsuHPI GGTGA 2 cut(s) 826, 1111
AvaII GGWCC 2 cut(s) 759, 1036
BaeGI GKGCMC 1 cut(s) 1234
BanI GGYRCC 1 cut(s) 1231
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 297, 1211
BbvI GCAGC 5 cut(s) 819, 963, 975, 987, 1061
BccI CCATC 4 cut(s) 358, 907, 943, 1309
BceAI ACGGC 1 cut(s) 1148
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 3 cut(s) 53, 633, 859
BcnI CCSGG 1 cut(s) 1150
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 6 cut(s) 833, 977, 989, 1001, 1075, 1320
BlsI GCNGC 6 cut(s) 834, 978, 990, 1002, 1076, 1321
Bme1390I CCNGG 4 cut(s) 53, 633, 859, 1150
Bme18I GGWCC 2 cut(s) 759, 1036
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 759, 1036
BmiI GGNNCC 3 cut(s) 1021, 1037, 1233
BmrFI CCNGG 4 cut(s) 53, 633, 859, 1150
BmsI GCATC 1 cut(s) 621
BpmI CTGGAG 2 cut(s) 880, 1252
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 1150
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 1273, 1303
Bsc4I CCNNNNNNNGG 2 cut(s) 864, 1149
Bse3DI GCAATG 3 cut(s) 47, 869, 998
BseBI CCWGG 3 cut(s) 53, 633, 859
BseGI GGATG 2 cut(s) 540, 699
BseLI CCNNNNNNNGG 2 cut(s) 864, 1149
BseMI GCAATG 3 cut(s) 47, 869, 998
BseMII CTCAG 2 cut(s) 544, 1257
BseRI GAGGAG 2 cut(s) 135, 765
BseSI GKGCMC 1 cut(s) 1234
BseXI GCAGC 5 cut(s) 819, 963, 975, 987, 1061
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 2 cut(s) 1192, 1319
BshNI GGYRCC 1 cut(s) 1231
BsiHKAI GWGCWC 2 cut(s) 297, 1211
BsiSI CCGG 1 cut(s) 1149
BslFI GGGAC 1 cut(s) 1141
BslI CCNNNNNNNGG 2 cut(s) 864, 1149
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 1141
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 1192, 1319
Bsp1286I GDGCHC 3 cut(s) 297, 1211, 1234
Bsp143I GATC 6 cut(s) 48, 400, 457, 546, 714, 819
Bsp68I TCGCGA 1 cut(s) 656
BspACI CCGC 3 cut(s) 1033, 1105, 1320
BspANI GGCC 2 cut(s) 1192, 1319
BspCNI CTCAG 2 cut(s) 543, 1256
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 3 cut(s) 1021, 1037, 1233
BspPI GGATC 3 cut(s) 43, 408, 465
BspT107I GGYRCC 1 cut(s) 1231
BsrDI GCAATG 3 cut(s) 47, 869, 998
BssMI GATC 6 cut(s) 48, 400, 457, 546, 714, 819
BssNAI GTATAC 1 cut(s) 1292
BssSI CACGAG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 1292
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 3 cut(s) 53, 633, 859
Bst4CI ACNGT 2 cut(s) 1123, 1326
Bst6I CTCTTC 3 cut(s) 912, 1103, 1305
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 3 cut(s) 200, 227, 707
BstDEI CTNAG 4 cut(s) 8, 530, 746, 1243
BstEII GGTNACC 1 cut(s) 1117
BstENI CCTNNNNNAGG 1 cut(s) 862
BstF5I GGATG 2 cut(s) 540, 699
BstFNI CGCG 1 cut(s) 656
BstKTI GATC 6 cut(s) 51, 403, 460, 549, 717, 822
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 6 cut(s) 48, 400, 457, 546, 714, 819
BstMWI GCNNNNNNNGC 4 cut(s) 783, 985, 997, 1111
BstNI CCWGG 3 cut(s) 53, 633, 859
BstNSI RCATGY 2 cut(s) 229, 481
BstPI GGTNACC 1 cut(s) 1117
BstSCI CCNGG 4 cut(s) 51, 631, 857, 1148
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 1234
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 5 cut(s) 819, 963, 975, 987, 1061
BstX2I RGATCY 3 cut(s) 48, 400, 457
BstYI RGATCY 3 cut(s) 48, 400, 457
BstZ17I GTATAC 1 cut(s) 1292
BsuRI GGCC 2 cut(s) 1192, 1319
BtgZI GCGATG 2 cut(s) 598, 637
BtsCI GGATG 2 cut(s) 540, 699
BtsI GCAGTG 3 cut(s) 147, 297, 624
BtsIMutI CAGTG 4 cut(s) 147, 297, 624, 1322
BtuMI TCGCGA 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 200, 227, 707
Cfr13I GGNCC 2 cut(s) 759, 1036
Csp6I GTAC 1 cut(s) 417
CviAII CATG 5 cut(s) 226, 472, 478, 1050, 1179
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 8, 530, 746, 1243
DpnI GATC 6 cut(s) 50, 402, 459, 548, 716, 821
DpnII GATC 6 cut(s) 48, 400, 457, 546, 714, 819
DriI GACNNNNNGTC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 1317
Eam1104I CTCTTC 3 cut(s) 912, 1103, 1305
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 3 cut(s) 912, 1103, 1305
Eco47I GGWCC 2 cut(s) 759, 1036
Eco91I GGTNACC 1 cut(s) 1117
EcoNI CCTNNNNNAGG 1 cut(s) 862
EcoO109I RGGNCCY 1 cut(s) 1036
EcoO65I GGTNACC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 51, 631, 857
FaeI CATG 5 cut(s) 229, 475, 481, 1053, 1182
FaqI GGGAC 1 cut(s) 1141
FatI CATG 5 cut(s) 225, 471, 477, 1049, 1178
FauI CCCGC 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 1291
Fnu4HI GCNGC 6 cut(s) 833, 977, 989, 1001, 1075, 1320
FokI GGATG 2 cut(s) 547, 706
Fsp4HI GCNGC 6 cut(s) 833, 977, 989, 1001, 1075, 1320
FspBI CTAG 1 cut(s) 26
GluI GCNGC 6 cut(s) 833, 977, 989, 1001, 1075, 1320
GsuI CTGGAG 2 cut(s) 880, 1252
HaeIII GGCC 2 cut(s) 1192, 1319
HapII CCGG 1 cut(s) 1149
Hin1II CATG 5 cut(s) 229, 475, 481, 1053, 1182
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 703
HpaII CCGG 1 cut(s) 1149
HphI GGTGA 2 cut(s) 826, 1111
Hpy166II GTNNAC 5 cut(s) 519, 580, 649, 899, 1292
Hpy8I GTNNAC 5 cut(s) 519, 580, 649, 899, 1292
HpyAV CCTTC 7 cut(s) 74, 658, 678, 858, 1182, 1194, 1254
HpyCH4III ACNGT 2 cut(s) 1123, 1326
HpyCH4V TGCA 5 cut(s) 40, 229, 979, 991, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 783, 985, 997, 1111
HpyF3I CTNAG 4 cut(s) 8, 530, 746, 1243
Hsp92II CATG 5 cut(s) 229, 475, 481, 1053, 1182
Kzo9I GATC 6 cut(s) 48, 400, 457, 546, 714, 819
LmnI GCTCC 4 cut(s) 122, 380, 752, 1206
Lsp1109I GCAGC 5 cut(s) 819, 963, 975, 987, 1061
LweI GCATC 1 cut(s) 621
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 1117
MalI GATC 6 cut(s) 50, 402, 459, 548, 716, 821
MboI GATC 6 cut(s) 48, 400, 457, 546, 714, 819
MflI RGATCY 3 cut(s) 48, 400, 457
MhlI GDGCHC 3 cut(s) 297, 1211, 1234
MluCI AATT 9 cut(s) 100, 177, 345, 406, 626, 805, 1006, 1165, 1195
MlyI GAGTC 4 cut(s) 12, 430, 773, 931
MmeI TCCRAC 2 cut(s) 435, 859
MnlI CCTC 6 cut(s) 113, 391, 599, 743, 1104, 1221
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 5 cut(s) 103, 770, 854, 1013, 1341
MslI CAYNNNNRTG 3 cut(s) 476, 617, 1183
MspA1I CMGCKG 1 cut(s) 1297
MspI CCGG 1 cut(s) 1149
MspR9I CCNGG 4 cut(s) 53, 633, 859, 1150
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 3 cut(s) 53, 633, 859
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 4 cut(s) 783, 985, 997, 1111
NciI CCSGG 1 cut(s) 1150
NdeII GATC 6 cut(s) 48, 400, 457, 546, 714, 819
NlaIII CATG 5 cut(s) 229, 475, 481, 1053, 1182
NlaIV GGNNCC 3 cut(s) 1021, 1037, 1233
NmeAIII GCCGAG 1 cut(s) 1275
NmuCI GTSAC 1 cut(s) 1117
NruI TCGCGA 1 cut(s) 656
NspI RCATGY 2 cut(s) 229, 481
PaeI GCATGC 1 cut(s) 229
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 6 cut(s) 112, 145, 280, 526, 601, 826
PflFI GACNNNGTC 1 cut(s) 763
PfoI TCCNGGA 2 cut(s) 51, 631
PkrI GCNGC 6 cut(s) 834, 978, 990, 1002, 1076, 1321
PleI GAGTC 4 cut(s) 11, 430, 772, 930
PpsI GAGTC 4 cut(s) 11, 430, 772, 930
PpuMI RGGWCCY 1 cut(s) 1036
PscI ACATGT 1 cut(s) 477
PsiI TTATAA 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 1036
Psp6I CCWGG 3 cut(s) 51, 631, 857
PspEI GGTNACC 1 cut(s) 1117
PspGI CCWGG 3 cut(s) 51, 631, 857
PspN4I GGNNCC 3 cut(s) 1021, 1037, 1233
PspPI GGNCC 2 cut(s) 759, 1036
PspPPI RGGWCCY 1 cut(s) 1036
PsuI RGATCY 3 cut(s) 48, 400, 457
PsyI GACNNNGTC 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 1297
RruI TCGCGA 1 cut(s) 656
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 3 cut(s) 476, 617, 1183
SaqAI TTAA 5 cut(s) 103, 770, 854, 1013, 1341
SatI GCNGC 6 cut(s) 833, 977, 989, 1001, 1075, 1320
Sau3AI GATC 6 cut(s) 48, 400, 457, 546, 714, 819
Sau96I GGNCC 2 cut(s) 759, 1036
SchI GAGTC 4 cut(s) 12, 430, 773, 931
ScrFI CCNGG 4 cut(s) 53, 633, 859, 1150
SduI GDGCHC 3 cut(s) 297, 1211, 1234
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 2 cut(s) 759, 1036
SmiMI CAYNNNNRTG 3 cut(s) 476, 617, 1183
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
SphI GCATGC 1 cut(s) 229
Sse9I AATT 9 cut(s) 100, 177, 345, 406, 626, 805, 1006, 1165, 1195
SsiI CCGC 3 cut(s) 1033, 1105, 1320
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 4 cut(s) 51, 631, 857, 1148
TaaI ACNGT 2 cut(s) 1123, 1326
TaqI TCGA 3 cut(s) 338, 482, 604
TaqII GACCGA 1 cut(s) 776
TasI AATT 9 cut(s) 100, 177, 345, 406, 626, 805, 1006, 1165, 1195
TauI GCSGC 1 cut(s) 1322
TfiI GAWTC 6 cut(s) 112, 145, 280, 526, 601, 826
Tru1I TTAA 5 cut(s) 103, 770, 854, 1013, 1341
Tru9I TTAA 5 cut(s) 103, 770, 854, 1013, 1341
TscAI CASTG 4 cut(s) 147, 297, 624, 1329
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 5 cut(s) 832, 976, 988, 1000, 1074
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 5 cut(s) 251, 611, 713, 812, 1009
TspRI CASTG 4 cut(s) 147, 297, 624, 1329
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 759, 1036
XagI CCTNNNNNAGG 1 cut(s) 862
XapI RAATTY 5 cut(s) 177, 345, 406, 805, 1165
XceI RCATGY 2 cut(s) 229, 481
XmiI GTMKAC 1 cut(s) 1291
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.