Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0004688

Physical Location & Seq

Genomic Coordinates Reverse (-)

368166 .. 376054

Gene Structure 7889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

atgaattacgagaagaggctcagagccgcggcggagatcatactcgccgacgacgcacacgccggagacgcgcgtgtcagcgccggagagctcggcgtgacggcgacgctgaagccgcaccaagtcgaaggcgtctcgtggctcatacggcggtacaacctcggcgtcaacgtcgttctcgtctttctgaaactggacgagttccttattacattcaaggaagctggagatccttcgtcaggctataatacagctgaagtcatagaacaactcaaaagcttaaaacgcatattgggggctttcatgctccggcgcacaaaatctaaactcatcgagattggagatctattcctgccaccccttactgagataacagtcttgcaaaagaaggtgtacatgtcaatattgaggaaggagcttcctaagctacttgcactatcttctggaggttcaaatcatcaatccttacagaatattgtgatacagttgcgaaaagcatgtagccatccttatctcttccctggtattgagccagaaccatatgaagagggtgaacacctgattcaggctagcggtaaacttatgattttggatcgactactttggaagctgcatgagcagggacgccgtgtccttctctttgctcagatgacacatacactcgatgttctacaggattttcttgagttgcgaaaatattcctacgagcgccttgatggatcaattcgggctgaggagcggtttgctgctataagaagtttcagcaagcaatcagcaaagcaaagtttgaagtcccaagctgatcaaaatgatgcttttgtcttcatgatctccactagagctgggggagttggcttgaatcttgttgctgctgatactgttatattctacgagcaagattggaatccgcaggttgataagcaagctttgcagcgggcacacaggattggtcaattaaattctgtgctgtcaataaacctagttaccggacgtacagtggaggaggttatcatgcggagagcagaaaggaagttgcagcttagccataatgttattggggatgatgttatggacgaggaaggtaaagagacagcaggagttgaacctagtgacctgcgatctatcatatttgggttacatctgtttgatcctgctgaagtcaacaatggtgagtgtgagatttcagaattggatgctttggccgagaaggcgatttcagtgcgcaataaagaaacagcaaccaaggatgagaggaaatttgaggtcggtccaacgaatgtattgaatggacaagatctggttgcaggaggaagttctacttctctcggtttaaatactagtttcgatgaagattcatatctctcctgggttaagaaattcaaggaggtaccacaagcaagtagcaatgaaaattcagatatgggaagccgaagaaacttacccgaggaaaggcgtctaaaacttgaggctgcaaaaaaaagagcagaggaaaagaagttatctaggtgggtagacctgggctaccaatcactgtctgttgaggagcctatcagtcctgttgatagggacatcatgtccgactcaggttctgtccaatttgtttatggagattgtacacaaccatcaaaagtttgcccctctaagcctaccattattttgagctgtgttgatgattcaggacagtggggtcatggaggaatgtttaatgcactggagaggctatctgcaagtgtccccgatgcatatcaacgagcctctgaatttaacgacctgcatcttggtgatcttcaccttataagacttgatgaggattcgaatgaacagaagatggacagcaatccccctcgatgggtggctttagctgttgtacaatcttataatcccaggcgtaaagtaccccggagcaagatttctattcctgacttggaacgttgcttatcaaaggcatcgttttcagccgcccaaagttctggtaaagatcttttctattcagttcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

667

Amino Acids

74.56

Weight (kDa)

5.93

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	193 - 317	8.3e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44980 AT2G44980 AT2G44980
fragaria_vesca	FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450 FvH4_7g09450
malus_domestica	MD07G1098400.v1.1
prunus_persica	Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1 Prupe.2G122400_v2.0.a1
pyrus_communis	pycom07g08110
rosa_chinensis	RchiOBHm_Chr1g0346091
rosa_laevigata	RLG00000028814
rosa_multiflora	Rmu_sc0003809.1_g000022 Rmu_ssc0000255.1_g000070
rosa_roxburghii	Rroxscaffold_4G00308820
rosa_rugosa	Rorug01G0178000 Rorug01G0178100 Rorug01G0178200
rosa_samantha	Rh1AG197500 Rh1BG162800 Rh1CG182500 Rh1DG193400
rosa_wichuraiana	Rw1G016330 Rw1G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1796, 1878
AasI	GACNNNNNNGTC	2 cut(s)	74, 1686
Acc16I	TGCGCA	1 cut(s)	1223
Acc36I	ACCTGC	3 cut(s)	901, 1122, 1779
Acc65I	GGTACC	1 cut(s)	1387
AccB1I	GGYRCC	1 cut(s)	1387
AccBSI	CCGCTC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	1512
AccII	CGCG	3 cut(s)	29, 71, 73
AclI	AACGTT	1 cut(s)	1930
AclWI	GGATC	4 cut(s)	224, 600, 727, 1142
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	5 cut(s)	958, 1256, 1376, 1411, 1760
AcuI	CTGAAG	3 cut(s)	131, 276, 1176
AcyI	GRCGYC	4 cut(s)	132, 165, 625, 1453
AfaI	GTAC	7 cut(s)	155, 395, 994, 1389, 1615, 1869, 1896
AfiI	CCNNNNNNNGG	5 cut(s)	239, 565, 1449, 1848, 1849
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	8 cut(s)	217, 453, 790, 859, 1103, 1285, 1381, 1997
AhdI	GACNNNNNGTC	2 cut(s)	629, 1573
AhlI	ACTAGT	1 cut(s)	1337
AjnI	CCWGG	4 cut(s)	520, 1364, 1515, 1883
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	60, 139, 1082
AlwI	GGATC	4 cut(s)	224, 600, 727, 1142
AlwNI	CAGNNNCTG	1 cut(s)	1589
Ama87I	CYCGRG	1 cut(s)	1442
AoxI	GGCC	1 cut(s)	1200
ApeKI	GCWGC	6 cut(s)	610, 746, 869, 931, 1036, 1469
ApoI	RAATTY	5 cut(s)	958, 1256, 1376, 1411, 1760
Asp700I	GAANNNNTTC	1 cut(s)	697
Asp718I	GGTACC	1 cut(s)	1387
AspLEI	GCGC	5 cut(s)	73, 83, 315, 711, 1224
AspS9I	GGNCC	1 cut(s)	1268
AsuC2I	CCSGG	1 cut(s)	1900
AsuHPI	GGTGA	4 cut(s)	563, 1181, 1781, 1793
AsuII	TTCGAA	1 cut(s)	1814
AsuNHI	GCTAGC	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	1442
AvaII	GGWCC	1 cut(s)	1268
BaeGI	GKGCMC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	1387
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	6 cut(s)	597, 733, 856, 943, 1048, 1456
BccI	CCATC	5 cut(s)	513, 710, 1630, 1822, 1842
BceAI	ACGGC	3 cut(s)	117, 164, 612
BcgI	CGANNNNNNTGC	2 cut(s)	1201, 1235
BciT130I	CCWGG	4 cut(s)	522, 1366, 1517, 1885
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	1900
BcoDI	GTCTC	3 cut(s)	60, 139, 1082
BcuI	ACTAGT	1 cut(s)	1337
BfaI	CTAG	6 cut(s)	570, 837, 980, 1107, 1338, 1503
BfmI	CTRYAG	1 cut(s)	671
BfoI	RGCGCY	2 cut(s)	84, 712
BfuAI	ACCTGC	3 cut(s)	901, 1122, 1779
BglI	GCCNNNNNGGC	1 cut(s)	1208
BglII	AGATCT	3 cut(s)	343, 1294, 1978
BlpI	GCTNAGC	1 cut(s)	1040
Bme1390I	CCNGG	5 cut(s)	522, 1366, 1517, 1885, 1900
Bme18I	GGWCC	1 cut(s)	1268
BmeRI	GACNNNNNGTC	2 cut(s)	629, 1573
BmeT110I	CYCGRG	1 cut(s)	1442
BmgT120I	GGNCC	1 cut(s)	1268
BmiI	GGNNCC	2 cut(s)	1389, 1545
BmrFI	CCNGG	5 cut(s)	522, 1366, 1517, 1885, 1900
BmsI	GCATC	5 cut(s)	802, 1183, 1729, 1783, 1955
BmtI	GCTAGC	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	814
BpmI	CTGGAG	3 cut(s)	246, 465, 1733
Bpu10I	CCTNAGC	2 cut(s)	423, 732
Bpu1102I	GCTNAGC	1 cut(s)	1040
Bpu14I	TTCGAA	1 cut(s)	1814
BpuEI	CTTGAG	2 cut(s)	704, 1484
BpuMI	CCSGG	1 cut(s)	1900
BsaBI	GATNNNNATC	3 cut(s)	903, 1356, 1743
BsaHI	GRCGYC	4 cut(s)	132, 165, 625, 1453
BsaJI	CCNNGG	9 cut(s)	27, 160, 520, 1242, 1365, 1443, 1516, 1883, 1898
BsaWI	WCCGGW	1 cut(s)	986
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 565, 1449, 1848, 1849
Bse1I	ACTGG	2 cut(s)	198, 1716
Bse3DI	GCAATG	1 cut(s)	1411
Bse8I	GATNNNNATC	3 cut(s)	903, 1356, 1743
BseBI	CCWGG	4 cut(s)	522, 1366, 1517, 1885
BseDI	CCNNGG	9 cut(s)	27, 160, 520, 1242, 1365, 1443, 1516, 1883, 1898
BseGI	GGATG	4 cut(s)	505, 1066, 1198, 1252
BseJI	GATNNNNATC	3 cut(s)	903, 1356, 1743
BseLI	CCNNNNNNNGG	5 cut(s)	239, 565, 1449, 1848, 1849
BseMI	GCAATG	1 cut(s)	1411
BseMII	CTCAG	5 cut(s)	34, 357, 659, 723, 1596
BseNI	ACTGG	2 cut(s)	198, 1716
BseRI	GAGGAG	3 cut(s)	749, 1016, 1556
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	6 cut(s)	597, 733, 856, 943, 1048, 1456
BseYI	CCCAGC	1 cut(s)	842
Bsh1236I	CGCG	3 cut(s)	29, 71, 73
BshFI	GGCC	1 cut(s)	1202
BshNI	GGYRCC	1 cut(s)	1387
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	1442
BsiSI	CCGG	5 cut(s)	63, 84, 310, 987, 1900
BslFI	GGGAC	4 cut(s)	636, 778, 1580, 1718
BslI	CCNNNNNNNGG	5 cut(s)	239, 565, 1449, 1848, 1849
BsmAI	GTCTC	3 cut(s)	60, 139, 1082
BsmBI	CGTCTC	2 cut(s)	60, 139
BsmFI	GGGAC	4 cut(s)	636, 778, 1580, 1718
BsnI	GGCC	1 cut(s)	1202
BsoBI	CYCGRG	1 cut(s)	1442
Bsp119I	TTCGAA	1 cut(s)	1814
Bsp1286I	GDGCHC	2 cut(s)	93, 940
Bsp1407I	TGTACA	3 cut(s)	393, 1613, 1867
Bsp1720I	GCTNAGC	1 cut(s)	1040
BspANI	GGCC	1 cut(s)	1202
BspCNI	CTCAG	5 cut(s)	33, 358, 658, 724, 1595
BspFNI	CGCG	3 cut(s)	29, 71, 73
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	1389, 1545
BspMI	ACCTGC	3 cut(s)	901, 1122, 1779
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	4 cut(s)	224, 600, 727, 1142
BspT104I	TTCGAA	1 cut(s)	1814
BspT107I	GGYRCC	1 cut(s)	1387
BsrBI	CCGCTC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	1411
BsrGI	TGTACA	3 cut(s)	393, 1613, 1867
BsrI	ACTGG	2 cut(s)	198, 1716
BssECI	CCNNGG	9 cut(s)	27, 160, 520, 1242, 1365, 1443, 1516, 1883, 1898
BssNI	GRCGYC	4 cut(s)	132, 165, 625, 1453
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	1242
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	4 cut(s)	522, 1366, 1517, 1885
Bst4CI	ACNGT	6 cut(s)	376, 486, 880, 997, 1533, 1683
Bst6I	CTCTTC	3 cut(s)	8, 521, 540
BstACI	GRCGYC	4 cut(s)	132, 165, 625, 1453
BstAPI	GCANNNNNTGC	1 cut(s)	928
BstAUI	TGTACA	3 cut(s)	393, 1613, 1867
BstBI	TTCGAA	1 cut(s)	1814
BstC8I	GCNNGC	4 cut(s)	571, 767, 924, 936
BstDEI	CTNAG	8 cut(s)	20, 366, 423, 645, 732, 1040, 1582, 1641
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	2 cut(s)	237, 563
BstF5I	GGATG	4 cut(s)	505, 1066, 1198, 1252
BstFNI	CGCG	3 cut(s)	29, 71, 73
BstH2I	RGCGCY	2 cut(s)	84, 712
BstHHI	GCGC	5 cut(s)	73, 83, 315, 711, 1224
BstMAI	GTCTC	3 cut(s)	60, 139, 1082
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 285, 424, 616, 928, 1208
BstNI	CCWGG	4 cut(s)	522, 1366, 1517, 1885
BstNSI	RCATGY	2 cut(s)	400, 501
BstSCI	CCNGG	5 cut(s)	520, 1364, 1515, 1883, 1898
BstSFI	CTRYAG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	940
BstUI	CGCG	3 cut(s)	29, 71, 73
BstV1I	GCAGC	6 cut(s)	597, 733, 856, 943, 1048, 1456
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	4 cut(s)	229, 343, 1294, 1978
BstXI	CCANNNNNNTGG	1 cut(s)	1970
BstYI	RGATCY	4 cut(s)	229, 343, 1294, 1978
BsuRI	GGCC	1 cut(s)	1202
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	505, 1066, 1198, 1252
BtsIMutI	CAGTG	5 cut(s)	1002, 1224, 1529, 1688, 1709
BveI	ACCTGC	3 cut(s)	901, 1122, 1779
Cac8I	GCNNGC	4 cut(s)	571, 767, 924, 936
CaiI	CAGNNNCTG	1 cut(s)	1589
CciI	TCATGA	1 cut(s)	825
CfoI	GCGC	5 cut(s)	73, 83, 315, 711, 1224
Cfr13I	GGNCC	1 cut(s)	1268
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	7 cut(s)	62, 77, 115, 121, 154, 633, 1442
Csp6I	GTAC	7 cut(s)	154, 394, 993, 1388, 1614, 1868, 1895
CviAII	CATG	8 cut(s)	304, 397, 498, 614, 826, 1012, 1573, 1691
CviQI	GTAC	7 cut(s)	154, 394, 993, 1388, 1614, 1868, 1895
DdeI	CTNAG	8 cut(s)	20, 366, 423, 645, 732, 1040, 1582, 1641
DraI	TTTAAA	1 cut(s)	1332
DrdI	GACNNNNNNGTC	2 cut(s)	74, 1686
DriI	GACNNNNNGTC	2 cut(s)	629, 1573
DseDI	GACNNNNNNGTC	2 cut(s)	74, 1686
EaeI	YGGCCR	1 cut(s)	1200
Eam1104I	CTCTTC	3 cut(s)	8, 521, 540
Eam1105I	GACNNNNNGTC	2 cut(s)	629, 1573
EarI	CTCTTC	3 cut(s)	8, 521, 540
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	1242
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	1268
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	3 cut(s)	131, 276, 1176
Eco88I	CYCGRG	1 cut(s)	1442
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	237, 563
EcoRII	CCWGG	4 cut(s)	520, 1364, 1515, 1883
EcoT14I	CCWWGG	1 cut(s)	1242
EcoT22I	ATGCAT	1 cut(s)	1744
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	1242
Esp3I	CGTCTC	2 cut(s)	60, 139
FaeI	CATG	8 cut(s)	307, 400, 501, 617, 829, 1015, 1576, 1694
FalI	AAGNNNNNCTT	2 cut(s)	1303, 1335
FaqI	GGGAC	4 cut(s)	636, 778, 1580, 1718
FatI	CATG	8 cut(s)	303, 396, 497, 613, 825, 1011, 1572, 1690
FauI	CCCGC	1 cut(s)	927
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	1512
FokI	GGATG	4 cut(s)	492, 1073, 1205, 1259
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	570, 837, 980, 1107, 1338, 1503
FspI	TGCGCA	1 cut(s)	1223
GlaI	GCGC	5 cut(s)	72, 82, 314, 710, 1223
GsaI	CCCAGC	1 cut(s)	846
GsuI	CTGGAG	3 cut(s)	246, 465, 1733
HaeII	RGCGCY	2 cut(s)	84, 712
HaeIII	GGCC	1 cut(s)	1202
HapII	CCGG	5 cut(s)	63, 84, 310, 987, 1900
HgaI	GACGC	7 cut(s)	62, 77, 115, 121, 154, 633, 1442
HhaI	GCGC	5 cut(s)	73, 83, 315, 711, 1224
Hin1I	GRCGYC	4 cut(s)	132, 165, 625, 1453
Hin1II	CATG	8 cut(s)	307, 400, 501, 617, 829, 1015, 1576, 1694
Hin6I	GCGC	5 cut(s)	71, 81, 313, 709, 1222
HinP1I	GCGC	5 cut(s)	71, 81, 313, 709, 1222
HincII	GTYRAC	2 cut(s)	169, 1162
HindII	GTYRAC	2 cut(s)	169, 1162
HindIII	AAGCTT	2 cut(s)	277, 924
HinfI	GANTC	7 cut(s)	562, 859, 904, 1352, 1580, 1673, 1811
HpaII	CCGG	5 cut(s)	63, 84, 310, 987, 1900
HphI	GGTGA	4 cut(s)	563, 1181, 1781, 1793
Hpy166II	GTNNAC	7 cut(s)	169, 394, 554, 578, 1162, 1513, 1616
Hpy188I	TCNGA	7 cut(s)	23, 189, 648, 1186, 1417, 1579, 1759
Hpy188III	TCNNGA	6 cut(s)	334, 444, 683, 826, 1677, 1919
Hpy8I	GTNNAC	7 cut(s)	169, 394, 554, 578, 1162, 1513, 1616
Hpy99I	CGWCG	4 cut(s)	53, 56, 109, 176
HpyAV	CCTTC	7 cut(s)	122, 243, 382, 406, 644, 1073, 1201
HpyCH4III	ACNGT	6 cut(s)	376, 486, 880, 997, 1533, 1683
HpyCH4IV	ACGT	3 cut(s)	171, 991, 1930
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 285, 424, 616, 928, 1208
HpyF3I	CTNAG	8 cut(s)	20, 366, 423, 645, 732, 1040, 1582, 1641
HpySE526I	ACGT	3 cut(s)	171, 991, 1930
Hsp92I	GRCGYC	4 cut(s)	132, 165, 625, 1453
Hsp92II	CATG	8 cut(s)	307, 400, 501, 617, 829, 1015, 1576, 1694
HspAI	GCGC	5 cut(s)	71, 81, 313, 709, 1222
KpnI	GGTACC	1 cut(s)	1391
Ksp22I	TGATCA	1 cut(s)	802
KspI	CCGCGG	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	312, 415, 736, 1543, 1902
Lsp1109I	GCAGC	6 cut(s)	597, 733, 856, 943, 1048, 1456
LweI	GCATC	5 cut(s)	802, 1183, 1729, 1783, 1955
MaeI	CTAG	6 cut(s)	570, 837, 980, 1107, 1338, 1503
MaeII	ACGT	3 cut(s)	171, 991, 1930
MaeIII	GTNAC	4 cut(s)	97, 982, 1109, 1134
MbiI	CCGCTC	1 cut(s)	739
MboII	GAAGA	9 cut(s)	25, 432, 508, 557, 814, 1361, 1443, 1778, 1837
MflI	RGATCY	4 cut(s)	229, 343, 1294, 1978
MhlI	GDGCHC	2 cut(s)	93, 940
MlyI	GAGTC	1 cut(s)	1574
MmeI	TCCRAC	2 cut(s)	1295, 1602
Mph1103I	ATGCAT	1 cut(s)	1744
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	6 cut(s)	281, 956, 1331, 1371, 1704, 1764
MslI	CAYNNNNRTG	1 cut(s)	1779
MspA1I	CMGCKG	3 cut(s)	29, 254, 934
MspI	CCGG	5 cut(s)	63, 84, 310, 987, 1900
MspR9I	CCNGG	5 cut(s)	522, 1366, 1517, 1885, 1900
MvaI	CCWGG	4 cut(s)	522, 1366, 1517, 1885
MvnI	CGCG	3 cut(s)	29, 71, 73
MwoI	GCNNNNNNNGC	9 cut(s)	53, 68, 115, 148, 285, 424, 616, 928, 1208
NciI	CCSGG	1 cut(s)	1900
NdeI	CATATG	1 cut(s)	541
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	8 cut(s)	307, 400, 501, 617, 829, 1015, 1576, 1694
NlaIV	GGNNCC	2 cut(s)	1389, 1545
NmeAIII	GCCGAG	3 cut(s)	72, 141, 1228
NmuCI	GTSAC	2 cut(s)	97, 1109
NsbI	TGCGCA	1 cut(s)	1223
NsiI	ATGCAT	1 cut(s)	1744
NspI	RCATGY	2 cut(s)	400, 501
NspV	TTCGAA	1 cut(s)	1814
PagI	TCATGA	1 cut(s)	825
PciI	ACATGT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 177
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	6 cut(s)	562, 859, 904, 1352, 1673, 1811
PleI	GAGTC	1 cut(s)	1574
PpsI	GAGTC	1 cut(s)	1574
PscI	ACATGT	1 cut(s)	396
PsiI	TTATAA	2 cut(s)	1796, 1878
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	1930
Psp6I	CCWGG	4 cut(s)	520, 1364, 1515, 1883
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	4 cut(s)	520, 1364, 1515, 1883
PspN4I	GGNNCC	2 cut(s)	1389, 1545
PspPI	GGNCC	1 cut(s)	1268
PstNI	CAGNNNCTG	1 cut(s)	1589
PsuI	RGATCY	4 cut(s)	229, 343, 1294, 1978
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	7 cut(s)	155, 395, 994, 1389, 1615, 1869, 1896
RsaNI	GTAC	7 cut(s)	154, 394, 993, 1388, 1614, 1868, 1895
RseI	CAYNNNNRTG	1 cut(s)	1779
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	6 cut(s)	281, 956, 1331, 1371, 1704, 1764
Sau96I	GGNCC	1 cut(s)	1268
SchI	GAGTC	1 cut(s)	1574
ScrFI	CCNGG	5 cut(s)	522, 1366, 1517, 1885, 1900
SduI	GDGCHC	2 cut(s)	93, 940
SfaNI	GCATC	5 cut(s)	802, 1183, 1729, 1783, 1955
SfcI	CTRYAG	1 cut(s)	671
Sfr303I	CCGCGG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	1814
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	1268
SmiMI	CAYNNNNRTG	1 cut(s)	1779
SmlI	CTYRAG	2 cut(s)	683, 1463
SmoI	CTYRAG	2 cut(s)	683, 1463
SpeI	ACTAGT	1 cut(s)	1337
SspI	AATATT	3 cut(s)	405, 475, 698
SspMI	CTAG	6 cut(s)	570, 837, 980, 1107, 1338, 1503
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	520, 1364, 1515, 1883, 1898
StyI	CCWWGG	1 cut(s)	1242
TaaI	ACNGT	6 cut(s)	376, 486, 880, 997, 1533, 1683
TaiI	ACGT	3 cut(s)	174, 994, 1933
TaqI	TCGA	7 cut(s)	126, 333, 595, 663, 1344, 1814, 1846
TaqII	GACCGA	1 cut(s)	1256
TatI	WGTACW	3 cut(s)	393, 1613, 1867
TauI	GCSGC	4 cut(s)	29, 32, 118, 1961
TfiI	GAWTC	6 cut(s)	562, 859, 904, 1352, 1673, 1811
Tru1I	TTAA	6 cut(s)	281, 956, 1331, 1371, 1704, 1764
Tru9I	TTAA	6 cut(s)	281, 956, 1331, 1371, 1704, 1764
TscAI	CASTG	5 cut(s)	1002, 1224, 1536, 1688, 1716
TseFI	GTSAC	2 cut(s)	97, 1109
TseI	GCWGC	6 cut(s)	610, 746, 869, 931, 1036, 1469
Tsp45I	GTSAC	2 cut(s)	97, 1109
TspDTI	ATGAA	8 cut(s)	17, 292, 558, 814, 1344, 1362, 1422, 1833
TspRI	CASTG	5 cut(s)	1002, 1224, 1536, 1688, 1716
VpaK11BI	GGWCC	1 cut(s)	1268
XagI	CCTNNNNNAGG	2 cut(s)	237, 563
XapI	RAATTY	5 cut(s)	958, 1256, 1376, 1411, 1760
XceI	RCATGY	2 cut(s)	400, 501
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1052, 1601
XmiI	GTMKAC	1 cut(s)	1512
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	6 cut(s)	570, 837, 980, 1107, 1338, 1503
Zsp2I	ATGCAT	1 cut(s)	1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.