Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1118

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atggagagcttaccgacgacgacgacgacgtcgaaatcggacagacgatcgagatcgaagcctattcaaacttccaagccttccatcttcttggccttcttctcctgcgtcgcttggctctacgtcgccggccggttgtggcaagatgcggagaacagaacagtcttagctaatcttcttaagaaaaacttaggccagagaccgatggtgctttcagttgaagataagttagcagtccttggatgcaaggacctggagaggaggattgttgaagctgagatggacttgacgttggccaagagtcaaggctacctcaagaacaacttgaagcaaacctctggtccatttctcgccgttattggagtttttaccggatttggcagccgtttgcagcggaatgggtttcgagggtcttggatgcctaaagtggatgctttgaaaaaacttgaagaaagaggagtagtcatacgttttgtgattggtcggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

162

Amino Acids

18.19

Weight (kDa)

10.28

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	25 - 102	3.8e-07	Domain of unknown function (DUF4094)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	32
AciI	CCGC	2 cut(s)	149, 394
AcoI	YGGCCR	2 cut(s)	130, 294
AcyI	GRCGYC	1 cut(s)	29
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	68, 221, 272, 328, 439, 449
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	9, 170, 275
AluI	AGCT	3 cut(s)	9, 170, 275
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	93, 130, 193, 294
ApeKI	GCWGC	2 cut(s)	381, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspS9I	GGNCC	2 cut(s)	250, 341
AvaII	GGWCC	2 cut(s)	250, 341
BalI	TGGCCA	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	393, 403
BccI	CCATC	3 cut(s)	92, 199, 274
BceAI	ACGGC	2 cut(s)	338, 369
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	382, 392
BlsI	GCNGC	2 cut(s)	383, 393
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	250, 341
BmgT120I	GGNCC	2 cut(s)	250, 341
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	4 cut(s)	136, 233, 408, 421
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	371
Bse118I	RCCGGY	2 cut(s)	128, 132
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	248, 423, 436
BseJI	GATNNNNATC	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	274, 471
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	393, 403
Bsh1285I	CGRYCG	2 cut(s)	50, 133
BshFI	GGCC	4 cut(s)	95, 132, 195, 296
BsiEI	CGRYCG	2 cut(s)	50, 133
BsiSI	CCGG	3 cut(s)	129, 133, 372
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	95, 132, 195, 296
Bso31I	GGTCTC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	47, 53
BspACI	CCGC	2 cut(s)	149, 394
BspANI	GGCC	4 cut(s)	95, 132, 195, 296
BspCNI	CTCAG	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	128, 132
BssAI	RCCGGY	2 cut(s)	128, 132
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	47, 53
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	166, 190, 276
BstF5I	GGATG	3 cut(s)	248, 423, 436
BstKTI	GATC	2 cut(s)	50, 56
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	47, 53
BstMCI	CGRYCG	2 cut(s)	50, 133
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	393, 403
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	95, 132, 195, 296
BtsCI	GGATG	3 cut(s)	248, 423, 436
Cac8I	GCNNGC	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	128, 132
Cfr13I	GGNCC	2 cut(s)	250, 341
CseI	GACGC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	166, 190, 276
DpnI	GATC	2 cut(s)	49, 55
DpnII	GATC	2 cut(s)	47, 53
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	130, 294
EagI	CGGCCG	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	250, 341
Eco52I	CGGCCG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaiI	YATR	1 cut(s)	467
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 308, 340
Fnu4HI	GCNGC	2 cut(s)	382, 392
FokI	GGATG	3 cut(s)	255, 430, 443
Fsp4HI	GCNGC	2 cut(s)	382, 392
GluI	GCNGC	2 cut(s)	382, 392
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	4 cut(s)	95, 132, 195, 296
HapII	CCGG	3 cut(s)	129, 133, 372
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	3 cut(s)	129, 133, 372
Hpy188I	TCNGA	2 cut(s)	40, 486
Hpy188III	TCNNGA	2 cut(s)	51, 316
Hpy99I	CGWCG	8 cut(s)	19, 22, 25, 28, 31, 34, 113, 128
HpyAV	CCTTC	2 cut(s)	90, 106
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	4 cut(s)	29, 123, 290, 469
HpyCH4V	TGCA	2 cut(s)	246, 391
HpyF3I	CTNAG	3 cut(s)	166, 190, 276
HpySE526I	ACGT	4 cut(s)	29, 123, 290, 469
Hsp92I	GRCGYC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	47, 53
LpnPI	CCDG	8 cut(s)	118, 142, 146, 209, 239, 266, 324, 385
Lsp1109I	GCAGC	2 cut(s)	393, 403
LweI	GCATC	4 cut(s)	136, 233, 408, 421
MaeII	ACGT	4 cut(s)	29, 123, 290, 469
MalI	GATC	2 cut(s)	49, 55
MboI	GATC	2 cut(s)	47, 53
MboII	GAAGA	5 cut(s)	79, 91, 167, 233, 461
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	6 cut(s)	252, 255, 323, 346, 401, 449
Mox20I	TGGCCA	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	394
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	3 cut(s)	129, 133, 372
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	2 cut(s)	47, 53
NgoMIV	GCCGGC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 26, 29
PdiI	GCCGGC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	383, 393
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	250, 341
PspPPI	RGGWCCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	382, 392
Sau3AI	GATC	2 cut(s)	47, 53
Sau96I	GGNCC	2 cut(s)	250, 341
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	254
SfaNI	GCATC	4 cut(s)	136, 233, 408, 421
SinI	GGWCC	2 cut(s)	250, 341
SmlI	CTYRAG	2 cut(s)	179, 314
SmoI	CTYRAG	2 cut(s)	179, 314
SsiI	CCGC	2 cut(s)	149, 394
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	4 cut(s)	32, 126, 293, 472
TaqI	TCGA	4 cut(s)	32, 50, 56, 406
TaqII	GACCGA	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	2 cut(s)	381, 391
Tth111I	GACNNNGTC	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	250, 341
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.