Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000482.1

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

94321 .. 115371

Gene Structure 21051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5355 bp

atggctactcttatcacttcactctccaccagcttcagccaagtccctccggcggctgttccggccgtcttggattgcattttggcctctaccggcgtatctcggtcgtcgctattcgcttcgcttctcgacactttcaccaagctctctgagggggtcatgaaaaatgaccagaagttggactcccatgactgtaactatctggcatcattggttggggcactttgtcaccttctaaagaaatttgacactaatcttggtgctttggaatcatttatatggaaatgttttcttccattgataaagatggcacacatgttcagccgcaatatgcttaaccagattacagaatcgtttattaatgctgtgactgagacaaacacctgggtagttgtggaggcaacactggtgccaatttttctaacattagttgccagttctattggtatgcctgaaaaggaagtatcagatacttttcagttcatgttgggatctaatgaccgggtaaatcatatggaaatgagtacaaaaaacatcctttcgccacctggatcaccttcgctgccaatttcatgccacatcctaaccttaatgcttgatgctgtccttcaaagcaagaaaatagctgcctcctcagaatcaataattgcaaatgggtgttttgatgataattttgctggtaaattgacttggggtctttgtagcttgactgagcaattgcttttacaaaatttggaacaccggtcctgtgctactgcctttcttctcccaatcattttcaaagcattttcttcttattgctcttttcaaatctcaatagatgggcagacctttacactttcaaggaacaacttctttatgaaaatttggaagtgctgtgggacactgttttctcttggaaccgtggagagaagagatgcttttggtgtactctccttgtacctgtctttttttccttttacagaagaaagtggagataccaacatgagtgataaagtggaatgttttgatataagagctgaaaccaaattttgggacgagattaaaagaggcctggttgataaggagagcttagtgaggaagcaatcgttacacatcttaaggatagcactacgcataaatggagcagcccaatcctccggtgttttagaggatatatcggctgaaaataattcaatgcctcacagcatgacaaagagggagctgtgggctgataaggaagctaaatctctgggtgtggggaaaatatgtagccaagttgagtcttctccggacagccagaacaagtgggaggcatttgtattgctgtatgaaatgcttgaagagtatggaactcacctcgttgaagcagcttggaattaccaggtatccttgttacttcgaaactctagctcagatgctaataataaaacctctatcagtggagcagttcatcaaaaccagatcgaaagtcctggagaaatctttaactggttagcaattttgtgggaacggggttttaatcatgacaatcctcaagttaggtgcttgatcatgcagtcatttttagggattgattggaagaattacggcacacatgcaagatcggtgcctggatattttgttcttggttcatttatacaagggctaaatgaccctgtgcatcacaaagaatttggtgtaaaaggaatatactcttcaatgacaatagaaggtgcagctaactttctaagcgaatatacaagttatctgaatgtgaggaagtgcattatgtttttgagtgacttagcatctgctgctaagcggcaacctcttggtagagttggattgatgtgccttgctgaatgcatttcttctgctgcttgtctagtcagaaagaataatagtgaaattgatgcacagtgctttgaagatggagttcatgacatgatcaaagtgggaaagtctcctcacaatgacaaaattgttttgcttgatgccttgagatttattattgagagcagcaaacaacatttcaattctaattatcgtcttcgagtttgtgagaaagtccttgactctgctgcttcagtggtgtgtacatgtgatctgcctcttgatgtacttttgcacttcatttcaacatttccatgggagttcactgatcacggcggtcccttaagagagaaaatacgacaatggcttatggggtgtggtaagcgttgtagtgtcaactgctgcagttctgagatgaagctcctgaagagtctttatgactttccaaataggtttacgagccattgcaatgatgatgcttcaaccacttttgacgatgaagatttggatgcatgggaatttgaagcgaagcggtggacaagagtgctctttattgcatgcaaggaggaatatcaattgttacccatactgctgtttattcaaaatcacggtagtgatgtctgcaaacaaaacaataagatggacctatttcctgtgaagtttttcatcctcatcttgagtctagttctggagcttcagatgatgcaagaaagagttgccaaacatggttctaagcttagaaccaaatcagagttttttgtgccagaatcaatgaatgaatttagtcatgcagatgttcctaatttatatcaaaagttcacggacatttttcttctcatattggaggagttggtctcttttgcaaacttgtcttgttccatattctcaaataacaataccactacgatgagagatgcaacccttcctggttctgtaaccggaaaactcggaggacctagtcaacgccggttgtcatcttctaccactactgctgtattgcaagcaactggagcagaaatacgtcttgcagcatatgaagcattagctcctactctcacagcgctagtgtctgtgtgttctcctcaaactttggatatacttaagaaaaatgacagctcattactatcagatggcaaacctctgttggattctttggtgctttcttttcttcagaacataaataagctccttacagttggagtatttgtacgatctcgacgtgcaattttaatgaattggaagtggatttgcctggaatctctactgtcaattccttgctatgctcttaggaatgggcttcttctagaggcaaataattttgtcttctcaggtgctgctctccgatgtattttttctgatattcttgagagccttgagaatgctggggaaggttctgttttaccgatgctcagatctgtccgattagttttggacttatttgcccaaggaaagtctggttcacttgtctgcttatgtgatggggtggattcccagatgctgtggcatttggttcattcttcttggatattgcatgtcagttgcaacaagcggaaggttgcacctattgctgcacttttgtcttccgttctccattcatctctatttagtgatgagagcatgcacataattgatggtgcacctgggcctctgaagtggtttgttgagaaaattctagaggaaggcacgaaaagtccccgtacaattcgtcttgctgcattacacttaacagggctgtggctatcatatcctaggattataaagtactatgtgaaggagctgaagctgctatctctacatggttccgttgcatttgatgaggacttcgaaggtgaattagctgataatcgtgataccagggctgaagtttctttgttggccaaaggccctgatcctgagctgaccaaagcatttattaatacagagttgtatgcacgagcctctgttgctgttttgttttataagctagcagacatggccgtcatggtgggatcaactaatgaaaatgcagattgccatgcagctttggaatctggaaaaatgtttttgcttgagcttcttgattccgcggtaaacgaaaaggatcttgcaaaagagttgtataagaagtatagtgcaattcatagaaggaaggtacgggcatggcaaatgatatgtattttgtcgcatttcgtctgtcaagatatagtttcagaagttgcacgttgcttgcacacatccctctataggaacaacttacctgcagttcgtcaatatttggaaacatttgcaattaatatatacttaaagtttccatcactggttggggagcaactagttcctatattaagagattatgacatgaggcctcaggctctctcttcttacgtatttatagcagctaacgtcatcctccatgcatctcaatctgttcaacaccgacatctgaatgaattacttcctcctatagttccactattaacctcacatcaccacagtctacgtggtttcacccagttgctggtttaccaagttctttgcaaattgttccctccattggattctaaagcctctgaaactatgactttagagaagaggtgttttgaggatctcaaatcgtacctcgcaaagaattctgattgtacgcgcttacgacaatcaatggaaggatatcttgatgcctacagtccccatagctcggtcactcctgcaggcgttttcatcaaccgggttgaggacgtcgagtttgaatgtgtaccaagatcccttatggagcaagtgctcaactttttgaatgatgtgagggaagaccttcgaaattcaatggcaaaggatgttatgactattaagaatgagagtttgagatctgatggagatcaagaccacatggcgatactgtctaatgctaatgaaagaaaattgagtacccagctgcctaaagatacctcactagattttcagaagaagattactctgtctaaacacgagaagcaagacataaacgttaattctcaccaagaaacttacaaacaacttcaggaagtagaaaaggacgataagcttcttgctcaggtgctgcagtctagaactctaggaatggaaagagagagatcaagcagacaacatcttatccttgtagcatctctgcttgatcggatacctaacctagctggccttgcacggacttgtgaggtatttaaagcatcaagtttggccattgcagatacgaacgtgttacatgacaaacagttccaactcatcagtgtgactgcagagaagtgggttcctatcatcgaagtcccagtgaatagtttgaaggtgttccttcagaaaaagaaacgagaaggcttctcaattttaggactagagcagactgcaaatagtatacctcttgatcaatatatatttccaaaagacacagtactggttcttgggcgagagaaggaaggtataccagttgatataatacatattctggatgcttgccttgagattccacagttgggagttgttagatctctcaatgttcatgtcagtggtgccattgctctgtgggagtatactagacagcagagatcccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1784

Amino Acids

200.1

Weight (kDa)

6.24

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	1633 - 1775	4.7e-25	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3551, 3753
AasI	GACNNNNNNGTC	1 cut(s)	3770
AatII	GACGTC	1 cut(s)	4512
Acc36I	ACCTGC	1 cut(s)	4039
AccB1I	GGYRCC	3 cut(s)	409, 1588, 5309
AccB7I	CCANNNNNTGG	3 cut(s)	178, 1032, 4291
AccI	GTMKAC	4 cut(s)	4270, 5155, 5221, 5330
AccII	CGCG	2 cut(s)	3860, 4417
AccIII	TCCGGA	1 cut(s)	1270
AciI	CCGC	8 cut(s)	53, 325, 1783, 2130, 2326, 3343, 3858, 3860
AclI	AACGTT	1 cut(s)	4773
AclWI	GGATC	8 cut(s)	499, 559, 3677, 3790, 3882, 4386, 4527, 5340
AcoI	YGGCCR	4 cut(s)	63, 3669, 3768, 4983
AcyI	GRCGYC	1 cut(s)	4509
AfeI	AGCGCT	1 cut(s)	2856
AfiI	CCNNNNNNNGG	9 cut(s)	52, 178, 1032, 4017, 4291, 4327, 4468, 4504, 5273
AflII	CTTAAG	3 cut(s)	1099, 2137, 2894
AflIII	ACRYGT	3 cut(s)	315, 2060, 5001
AgeI	ACCGGT	1 cut(s)	741
AhdI	GACNNNNNGTC	1 cut(s)	693
AhlI	ACTAGT	1 cut(s)	4105
AjiI	CACGTC	1 cut(s)	3014
AleI	CACNNNNGTG	1 cut(s)	2406
AloI	GAACNNNNNNTCC	2 cut(s)	1587, 1619
Alw21I	GWGCWC	3 cut(s)	2343, 3433, 4554
Alw26I	GTCTC	3 cut(s)	368, 1929, 2653
Alw44I	GTGCAC	1 cut(s)	3429
AlwI	GGATC	8 cut(s)	499, 559, 3677, 3790, 3882, 4386, 4527, 5340
AlwNI	CAGNNNCTG	4 cut(s)	3128, 3292, 4291, 4846
Aor13HI	TCCGGA	1 cut(s)	1270
Aor51HI	AGCGCT	1 cut(s)	2856
ApaLI	GTGCAC	1 cut(s)	3429
ArsI	GACNNNNNNTTYG	2 cut(s)	4499, 4531
AseI	ATTAAT	3 cut(s)	360, 3708, 4065
AsiGI	ACCGGT	1 cut(s)	741
Asp700I	GAANNNNTTC	5 cut(s)	851, 2456, 4227, 4581, 5090
AspA2I	CCTAGG	1 cut(s)	3542
AspLEI	GCGC	2 cut(s)	2857, 4419
AspS9I	GGNCC	6 cut(s)	744, 2132, 2437, 2747, 3437, 3677
AsuC2I	CCSGG	2 cut(s)	503, 4499
AsuHPI	GGTGA	8 cut(s)	130, 221, 546, 1328, 3635, 4253, 4273, 4775
AsuII	TTCGAA	3 cut(s)	1381, 3618, 4585
AsuNHI	GCTAGC	1 cut(s)	3757
AvaII	GGWCC	4 cut(s)	744, 2132, 2437, 2747
AvrII	CCTAGG	1 cut(s)	3542
AxyI	CCTNAGG	1 cut(s)	4140
BaeGI	GKGCMC	2 cut(s)	223, 3433
BaeI	ACNNNNGTAYC	4 cut(s)	81, 114, 4986, 5019
BalI	TGGCCA	2 cut(s)	3671, 4985
BanI	GGYRCC	3 cut(s)	409, 1588, 5309
BauI	CACGAG	2 cut(s)	3726, 4754
BbsI	GAAGAC	5 cut(s)	1257, 2003, 3109, 3366, 4584
Bbv12I	GWGCWC	3 cut(s)	2343, 3433, 4554
BccI	CCATC	9 cut(s)	301, 815, 1886, 2428, 2918, 3266, 3419, 4093, 4634
BceAI	ACGGC	4 cut(s)	50, 1585, 2143, 3755
BciVI	GTATCC	2 cut(s)	1378, 4920
BclI	TGATCA	4 cut(s)	1530, 1908, 2122, 5164
BcnI	CCSGG	2 cut(s)	503, 4499
BcoDI	GTCTC	3 cut(s)	368, 1929, 2653
BcuI	ACTAGT	1 cut(s)	4105
BfmI	CTRYAG	8 cut(s)	2197, 4015, 4032, 4236, 4453, 4479, 4847, 5040
BfoI	RGCGCY	1 cut(s)	2858
BfrI	CTTAAG	3 cut(s)	1099, 2137, 2894
BfuAI	ACCTGC	1 cut(s)	4039
BfuI	GTATCC	2 cut(s)	1378, 4920
BglII	AGATCT	3 cut(s)	3206, 4634, 5285
BlnI	CCTAGG	1 cut(s)	3542
BlpI	GCTNAGC	1 cut(s)	1779
BmcAI	AGTACT	2 cut(s)	3557, 5193
Bme18I	GGWCC	4 cut(s)	744, 2132, 2437, 2747
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmgBI	CACGTC	1 cut(s)	3014
BmgT120I	GGNCC	6 cut(s)	744, 2132, 2437, 2747, 3437, 3677
BmiI	GGNNCC	7 cut(s)	411, 901, 1590, 2134, 3595, 5055, 5311
BmrI	ACTGGG	3 cut(s)	4279, 5066, 5344
BmtI	GCTAGC	1 cut(s)	3761
BmuI	ACTGGG	3 cut(s)	4279, 5066, 5344
BpiI	GAAGAC	5 cut(s)	1257, 2003, 3109, 3366, 4584
BplI	GAGNNNNNCTC	2 cut(s)	2633, 2665
BpmI	CTGGAG	3 cut(s)	1476, 2504, 2823
Bpu10I	CCTNAGC	2 cut(s)	3687, 4839
Bpu1102I	GCTNAGC	1 cut(s)	1779
Bpu14I	TTCGAA	3 cut(s)	1381, 3618, 4585
BpuEI	CTTGAG	7 cut(s)	1500, 1981, 2491, 3179, 3188, 3863, 5279
BpuMI	CCSGG	2 cut(s)	503, 4499
BsaAI	YACGTR	2 cut(s)	4159, 4274
BsaBI	GATNNNNATC	1 cut(s)	4644
BsaHI	GRCGYC	1 cut(s)	4509
BsaI	GGTCTC	1 cut(s)	2653
BsaJI	CCNNGG	8 cut(s)	384, 903, 2108, 3238, 3434, 3542, 3648, 3858
BsaWI	WCCGGW	4 cut(s)	741, 1139, 1270, 2732
BsaXI	ACNNNNNCTCC	2 cut(s)	2985, 3015
Bsc4I	CCNNNNNNNGG	9 cut(s)	52, 178, 1032, 4017, 4291, 4327, 4468, 4504, 5273
Bse118I	RCCGGY	3 cut(s)	92, 741, 2760
Bse21I	CCTNAGG	1 cut(s)	4140
Bse3DI	GCAATG	4 cut(s)	2257, 2269, 4986, 5313
Bse8I	GATNNNNATC	1 cut(s)	4644
BseAI	TCCGGA	1 cut(s)	1270
BseDI	CCNNGG	8 cut(s)	384, 903, 2108, 3238, 3434, 3542, 3648, 3858
BseGI	GGATG	8 cut(s)	534, 579, 2308, 2460, 4007, 4179, 4609, 5254
BseJI	GATNNNNATC	1 cut(s)	4644
BseLI	CCNNNNNNNGG	9 cut(s)	52, 178, 1032, 4017, 4291, 4327, 4468, 4504, 5273
BseMI	GCAATG	4 cut(s)	2257, 2269, 4986, 5313
BseRI	GAGGAG	4 cut(s)	622, 1917, 2654, 2865
BseSI	GKGCMC	2 cut(s)	223, 3433
BseX3I	CGGCCG	1 cut(s)	63
BseYI	CCCAGC	2 cut(s)	3176, 4698
BsgI	GTGCAG	2 cut(s)	1716, 3348
Bsh1236I	CGCG	2 cut(s)	3860, 4417
Bsh1285I	CGRYCG	2 cut(s)	66, 107
BshNI	GGYRCC	3 cut(s)	409, 1588, 5309
BshTI	ACCGGT	1 cut(s)	741
BsiEI	CGRYCG	2 cut(s)	66, 107
BsiHKAI	GWGCWC	3 cut(s)	2343, 3433, 4554
BslFI	GGGAC	7 cut(s)	29, 895, 1049, 2118, 3471, 4443, 5054
BslI	CCNNNNNNNGG	9 cut(s)	52, 178, 1032, 4017, 4291, 4327, 4468, 4504, 5273
BsmAI	GTCTC	3 cut(s)	368, 1929, 2653
BsmFI	GGGAC	7 cut(s)	29, 895, 1049, 2118, 3471, 4443, 5054
BsmI	GAATGC	2 cut(s)	1829, 3178
Bso31I	GGTCTC	1 cut(s)	2653
Bsp119I	TTCGAA	3 cut(s)	1381, 3618, 4585
Bsp1286I	GDGCHC	4 cut(s)	223, 2343, 3433, 4554
Bsp13I	TCCGGA	1 cut(s)	1270
Bsp1407I	TGTACA	1 cut(s)	2057
Bsp1720I	GCTNAGC	1 cut(s)	1779
Bsp19I	CCATGG	1 cut(s)	2108
BspACI	CCGC	8 cut(s)	53, 325, 1783, 2130, 2326, 3343, 3858, 3860
BspEI	TCCGGA	1 cut(s)	1270
BspFNI	CGCG	2 cut(s)	3860, 4417
BspHI	TCATGA	3 cut(s)	159, 1504, 1900
BspLI	GGNNCC	7 cut(s)	411, 901, 1590, 2134, 3595, 5055, 5311
BspMAI	CTGCAG	5 cut(s)	2201, 4036, 4483, 4851, 5044
BspMI	ACCTGC	1 cut(s)	4039
BspOI	GCTAGC	1 cut(s)	3761
BspPI	GGATC	8 cut(s)	499, 559, 3677, 3790, 3882, 4386, 4527, 5340
BspT104I	TTCGAA	3 cut(s)	1381, 3618, 4585
BspT107I	GGYRCC	3 cut(s)	409, 1588, 5309
BspTI	CTTAAG	3 cut(s)	1099, 2137, 2894
BspTNI	GGTCTC	1 cut(s)	2653
BsrDI	GCAATG	4 cut(s)	2257, 2269, 4986, 5313
BsrFI	RCCGGY	3 cut(s)	92, 741, 2760
BsrGI	TGTACA	1 cut(s)	2057
BssAI	RCCGGY	3 cut(s)	92, 741, 2760
BssECI	CCNNGG	8 cut(s)	384, 903, 2108, 3238, 3434, 3542, 3648, 3858
BssNAI	GTATAC	3 cut(s)	5156, 5222, 5331
BssNI	GRCGYC	1 cut(s)	4509
BssSI	CACGAG	2 cut(s)	3726, 4754
BssT1I	CCWWGG	3 cut(s)	2108, 3238, 3542
Bst1107I	GTATAC	3 cut(s)	5156, 5222, 5331
Bst2BI	CACGAG	2 cut(s)	3726, 4754
Bst6I	CTCTTC	6 cut(s)	907, 1317, 1681, 2216, 4156, 4358
BstACI	GRCGYC	1 cut(s)	4509
BstAFI	CTTAAG	3 cut(s)	1099, 2137, 2894
BstAPI	GCANNNNNTGC	2 cut(s)	1775, 3359
BstAUI	TGTACA	1 cut(s)	2057
BstBAI	YACGTR	2 cut(s)	4159, 4274
BstBI	TTCGAA	3 cut(s)	1381, 3618, 4585
BstC8I	GCNNGC	8 cut(s)	2353, 2796, 3413, 3759, 4001, 4483, 4942, 5254
BstDSI	CCRYGG	3 cut(s)	903, 2108, 3858
BstF5I	GGATG	8 cut(s)	534, 579, 2308, 2460, 4007, 4179, 4609, 5254
BstFNI	CGCG	2 cut(s)	3860, 4417
BstH2I	RGCGCY	1 cut(s)	2858
BstHHI	GCGC	2 cut(s)	2857, 4419
BstMAI	GTCTC	3 cut(s)	368, 1929, 2653
BstMCI	CGRYCG	2 cut(s)	66, 107
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 1775, 2804, 2831, 3359, 3577, 3737, 3767, 4946
BstNSI	RCATGY	6 cut(s)	319, 1580, 2064, 2355, 3329, 3415
BstSFI	CTRYAG	8 cut(s)	2197, 4015, 4032, 4236, 4453, 4479, 4847, 5040
BstSLI	GKGCMC	2 cut(s)	223, 3433
BstSNI	TACGTA	1 cut(s)	4159
BstUI	CGCG	2 cut(s)	3860, 4417
BstV2I	GAAGAC	5 cut(s)	1257, 2003, 3109, 3366, 4584
BstX2I	RGATCY	8 cut(s)	491, 3206, 3874, 4378, 4532, 4634, 5285, 5345
BstYI	RGATCY	8 cut(s)	491, 3206, 3874, 4378, 4532, 4634, 5285, 5345
BstZ17I	GTATAC	3 cut(s)	5156, 5222, 5331
BstZI	CGGCCG	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	4140
BsuI	GTATCC	2 cut(s)	1378, 4920
BtgI	CCRYGG	3 cut(s)	903, 2108, 3858
BtrI	CACGTC	1 cut(s)	3014
BtsCI	GGATG	8 cut(s)	534, 579, 2308, 2460, 4007, 4179, 4609, 5254
BveI	ACCTGC	1 cut(s)	4039
Cac8I	GCNNGC	8 cut(s)	2353, 2796, 3413, 3759, 4001, 4483, 4942, 5254
CaiI	CAGNNNCTG	4 cut(s)	3128, 3292, 4291, 4846
CciI	TCATGA	3 cut(s)	159, 1504, 1900
CfoI	GCGC	2 cut(s)	2857, 4419
Cfr10I	RCCGGY	3 cut(s)	92, 741, 2760
Cfr13I	GGNCC	6 cut(s)	744, 2132, 2437, 2747, 3437, 3677
Cfr42I	CCGCGG	1 cut(s)	3861
CsiI	ACCWGGT	1 cut(s)	1362
CspAI	ACCGGT	1 cut(s)	741
DraI	TTTAAA	1 cut(s)	4969
DrdI	GACNNNNNNGTC	1 cut(s)	3770
DriI	GACNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	3770
EaeI	YGGCCR	4 cut(s)	63, 3669, 3768, 4983
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	6 cut(s)	907, 1317, 1681, 2216, 4156, 4358
Eam1105I	GACNNNNNGTC	1 cut(s)	693
EarI	CTCTTC	6 cut(s)	907, 1317, 1681, 2216, 4156, 4358
EclXI	CGGCCG	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	4159
Eco130I	CCWWGG	3 cut(s)	2108, 3238, 3542
Eco147I	AGGCCT	2 cut(s)	1053, 4138
Eco31I	GGTCTC	1 cut(s)	2653
Eco32I	GATATC	1 cut(s)	4442
Eco47I	GGWCC	4 cut(s)	744, 2132, 2437, 2747
Eco47III	AGCGCT	1 cut(s)	2856
Eco52I	CGGCCG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	4140
EcoO109I	RGGNCCY	2 cut(s)	2747, 3677
EcoRI	GAATTC	1 cut(s)	4402
EcoRV	GATATC	1 cut(s)	4442
EcoT14I	CCWWGG	3 cut(s)	2108, 3238, 3542
EcoT22I	ATGCAT	3 cut(s)	1829, 2308, 4192
ErhI	CCWWGG	3 cut(s)	2108, 3238, 3542
FalI	AAGNNNNNCTT	6 cut(s)	904, 936, 1055, 1087, 4428, 4460
FaqI	GGGAC	7 cut(s)	29, 895, 1049, 2118, 3471, 4443, 5054
FauNDI	CATATG	2 cut(s)	513, 2827
FbaI	TGATCA	4 cut(s)	1530, 1908, 2122, 5164
FblI	GTMKAC	4 cut(s)	4270, 5155, 5221, 5330
FokI	GGATG	8 cut(s)	521, 566, 2315, 2447, 3994, 4166, 4616, 5261
GlaI	GCGC	2 cut(s)	2856, 4418
GsaI	CCCAGC	2 cut(s)	3180, 4702
GsuI	CTGGAG	3 cut(s)	1476, 2504, 2823
HaeII	RGCGCY	1 cut(s)	2858
HhaI	GCGC	2 cut(s)	2857, 4419
Hin1I	GRCGYC	1 cut(s)	4509
Hin6I	GCGC	2 cut(s)	2855, 4417
HinP1I	GCGC	2 cut(s)	2855, 4417
HincII	GTYRAC	2 cut(s)	2191, 2756
HindII	GTYRAC	2 cut(s)	2191, 2756
HindIII	AAGCTT	2 cut(s)	2528, 4829
HphI	GGTGA	8 cut(s)	130, 221, 546, 1328, 3635, 4253, 4273, 4775
Hpy99I	CGWCG	3 cut(s)	112, 3015, 4514
HpyCH4IV	ACGT	9 cut(s)	2815, 3013, 3994, 4158, 4176, 4273, 4509, 4773, 5001
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 1775, 2804, 2831, 3359, 3577, 3737, 3767, 4946
HpySE526I	ACGT	9 cut(s)	2815, 3013, 3994, 4158, 4176, 4273, 4509, 4773, 5001
Hsp92I	GRCGYC	1 cut(s)	4509
HspAI	GCGC	2 cut(s)	2855, 4417
Kpn2I	TCCGGA	1 cut(s)	1270
Ksp22I	TGATCA	4 cut(s)	1530, 1908, 2122, 5164
KspI	CCGCGG	1 cut(s)	3861
MabI	ACCWGGT	1 cut(s)	1362
MaeII	ACGT	9 cut(s)	2815, 3013, 3994, 4158, 4176, 4273, 4509, 4773, 5001
MfeI	CAATTG	2 cut(s)	716, 2369
MflI	RGATCY	8 cut(s)	491, 3206, 3874, 4378, 4532, 4634, 5285, 5345
MhlI	GDGCHC	4 cut(s)	223, 2343, 3433, 4554
MlsI	TGGCCA	2 cut(s)	3671, 4985
MluNI	TGGCCA	2 cut(s)	3671, 4985
MlyI	GAGTC	5 cut(s)	176, 1271, 2030, 2233, 2482
MmeI	TCCRAC	5 cut(s)	159, 1783, 2919, 2971, 5047
Mox20I	TGGCCA	2 cut(s)	3671, 4985
Mph1103I	ATGCAT	3 cut(s)	1829, 2308, 4192
MroI	TCCGGA	1 cut(s)	1270
MroXI	GAANNNNTTC	5 cut(s)	851, 2456, 4227, 4581, 5090
MscI	TGGCCA	2 cut(s)	3671, 4985
MslI	CAYNNNNRTG	9 cut(s)	277, 2107, 2262, 2406, 2586, 2699, 4218, 5033, 5304
Msp20I	TGGCCA	2 cut(s)	3671, 4985
MspA1I	CMGCKG	2 cut(s)	3860, 4702
MspCI	CTTAAG	3 cut(s)	1099, 2137, 2894
MunI	CAATTG	2 cut(s)	716, 2369
Mva1269I	GAATGC	2 cut(s)	1829, 3178
MvnI	CGCG	2 cut(s)	3860, 4417
MwoI	GCNNNNNNNGC	9 cut(s)	62, 1775, 2804, 2831, 3359, 3577, 3737, 3767, 4946
NciI	CCSGG	2 cut(s)	503, 4499
NcoI	CCATGG	1 cut(s)	2108
NdeI	CATATG	2 cut(s)	513, 2827
NheI	GCTAGC	1 cut(s)	3757
NlaIV	GGNNCC	7 cut(s)	411, 901, 1590, 2134, 3595, 5055, 5311
NmuCI	GTSAC	5 cut(s)	227, 367, 1760, 4471, 5035
NsiI	ATGCAT	3 cut(s)	1829, 2308, 4192
NspI	RCATGY	6 cut(s)	319, 1580, 2064, 2355, 3329, 3415
NspV	TTCGAA	3 cut(s)	1381, 3618, 4585
OliI	CACNNNNGTG	1 cut(s)	2406
PaeI	GCATGC	2 cut(s)	2355, 3415
PagI	TCATGA	3 cut(s)	159, 1504, 1900
PceI	AGGCCT	2 cut(s)	1053, 4138
PciI	ACATGT	2 cut(s)	315, 2060
PcsI	WCGNNNNNNNCGW	1 cut(s)	3010
PctI	GAATGC	2 cut(s)	1829, 3178
PdmI	GAANNNNTTC	5 cut(s)	851, 2456, 4227, 4581, 5090
PflFI	GACNNNGTC	1 cut(s)	2751
PflMI	CCANNNNNTGG	3 cut(s)	178, 1032, 4291
PfoI	TCCNGGA	1 cut(s)	1453
PinAI	ACCGGT	1 cut(s)	741
PleI	GAGTC	5 cut(s)	176, 1270, 2030, 2232, 2481
PpsI	GAGTC	5 cut(s)	176, 1270, 2030, 2232, 2481
Ppu21I	YACGTR	2 cut(s)	4159, 4274
PpuMI	RGGWCCY	1 cut(s)	2747
PscI	ACATGT	2 cut(s)	315, 2060
PshBI	ATTAAT	3 cut(s)	360, 3708, 4065
PsiI	TTATAA	2 cut(s)	3551, 3753
Psp1406I	AACGTT	1 cut(s)	4773
Psp5II	RGGWCCY	1 cut(s)	2747
PspFI	CCCAGC	2 cut(s)	3176, 4698
PspN4I	GGNNCC	7 cut(s)	411, 901, 1590, 2134, 3595, 5055, 5311
PspPI	GGNCC	6 cut(s)	744, 2132, 2437, 2747, 3437, 3677
PspPPI	RGGWCCY	1 cut(s)	2747
PstI	CTGCAG	5 cut(s)	2201, 4036, 4483, 4851, 5044
PstNI	CAGNNNCTG	4 cut(s)	3128, 3292, 4291, 4846
PsuI	RGATCY	8 cut(s)	491, 3206, 3874, 4378, 4532, 4634, 5285, 5345
PsyI	GACNNNGTC	1 cut(s)	2751
PvuII	CAGCTG	1 cut(s)	4702
RseI	CAYNNNNRTG	9 cut(s)	277, 2107, 2262, 2406, 2586, 2699, 4218, 5033, 5304
SacII	CCGCGG	1 cut(s)	3861
Sau96I	GGNCC	6 cut(s)	744, 2132, 2437, 2747, 3437, 3677
SbfI	CCTGCAGG	1 cut(s)	4483
ScaI	AGTACT	2 cut(s)	3557, 5193
SchI	GAGTC	5 cut(s)	176, 1271, 2030, 2233, 2482
SdaI	CCTGCAGG	1 cut(s)	4483
SduI	GDGCHC	4 cut(s)	223, 2343, 3433, 4554
SexAI	ACCWGGT	1 cut(s)	1362
SfcI	CTRYAG	8 cut(s)	2197, 4015, 4032, 4236, 4453, 4479, 4847, 5040
Sfr303I	CCGCGG	1 cut(s)	3861
SfuI	TTCGAA	3 cut(s)	1381, 3618, 4585
SgrBI	CCGCGG	1 cut(s)	3861
SinI	GGWCC	4 cut(s)	744, 2132, 2437, 2747
SmiMI	CAYNNNNRTG	9 cut(s)	277, 2107, 2262, 2406, 2586, 2699, 4218, 5033, 5304
SnaBI	TACGTA	1 cut(s)	4159
SpeI	ACTAGT	1 cut(s)	4105
SphI	GCATGC	2 cut(s)	2355, 3415
Sse8387I	CCTGCAGG	1 cut(s)	4483
SseBI	AGGCCT	2 cut(s)	1053, 4138
SsiI	CCGC	8 cut(s)	53, 325, 1783, 2130, 2326, 3343, 3858, 3860
SspI	AATATT	1 cut(s)	4046
StuI	AGGCCT	2 cut(s)	1053, 4138
StyI	CCWWGG	3 cut(s)	2108, 3238, 3542
TaiI	ACGT	9 cut(s)	2818, 3016, 3997, 4161, 4179, 4276, 4512, 4776, 5004
TaqI	TCGA	9 cut(s)	129, 1381, 1446, 2014, 3010, 3618, 4512, 4585, 5064
TaqII	GACCGA	2 cut(s)	93, 4459
TatI	WGTACW	6 cut(s)	524, 928, 2057, 2080, 3555, 5191
TauI	GCSGC	3 cut(s)	56, 327, 1786
TseFI	GTSAC	5 cut(s)	227, 367, 1760, 4471, 5035
Tsp45I	GTSAC	5 cut(s)	227, 367, 1760, 4471, 5035
TspGWI	ACGGA	4 cut(s)	2630, 3367, 3586, 4966
Tth111I	GACNNNGTC	1 cut(s)	2751
Van91I	CCANNNNNTGG	3 cut(s)	178, 1032, 4291
Vha464I	CTTAAG	3 cut(s)	1099, 2137, 2894
VneI	GTGCAC	1 cut(s)	3429
VpaK11BI	GGWCC	4 cut(s)	744, 2132, 2437, 2747
VspI	ATTAAT	3 cut(s)	360, 3708, 4065
XbaI	TCTAGA	3 cut(s)	3097, 3466, 4853
XceI	RCATGY	6 cut(s)	319, 1580, 2064, 2355, 3329, 3415
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3245, 4271
XmaJI	CCTAGG	1 cut(s)	3542
XmiI	GTMKAC	4 cut(s)	4270, 5155, 5221, 5330
XmnI	GAANNNNTTC	5 cut(s)	851, 2456, 4227, 4581, 5090
ZraI	GACGTC	1 cut(s)	4510
ZrmI	AGTACT	2 cut(s)	3557, 5193
Zsp2I	ATGCAT	3 cut(s)	1829, 2308, 4192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.