Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000153

Orthogroup ID

OG0014812

Physical Location & Seq

Genomic Coordinates Forward (+)

332730 .. 334409

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_153G00436760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGAGCTTTGACGGCAAAGCCTGAGCCTATGCGTTTGGAAGCCTCTCCAAATTCTGGTGTATTTGTTAACTTTATTGACTATGGCGCTGTTGGAAATGGTCTTATAGATGATTCTCAGGCCTTCGCAAAAGCATGGAGAGCCTCCTGCCTAGCTACTCAAGCTGTTCAAGCAAAGATCGTCATACCTGCTGCAAAAACTTTCCTATTGCAACCGACATATTTCAATGGTCCTTGCAATTCAAACTCCGTACATGTTGAGGTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

89

Amino Acids

9.43

Weight (kDa)

6.52

Isoelectric Point (pI)

21.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014812)

Species	Orthologous Gene IDs
malus_domestica	MD03G1260900.v1.1
pyrus_communis	pycom15g11180
rosa_chinensis	RchiOBHm_Chr2g0146311 RchiOBHm_Chr3g0481611
rosa_multiflora	Rmu_sc0010155.1_g000002 Rmu_ssc0000420.1_g000030
rosa_roxburghii	Rroxscaffold_153G00436760 Rroxscaffold_1G00032790 Rroxscaffold_2G00104840
rosa_rugosa	Rorug06G0113100
rosa_samantha	Rh2AG413400 Rh2DG433300 Rh4CG317800 Rh4DG260000 Rh4DG299500
rosa_wichuraiana	Rw4G022340 Rw4G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	170, 226, 243
AluBI	AGCT	3 cut(s)	8, 155, 164
AluI	AGCT	3 cut(s)	8, 155, 164
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	15, 131
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	56
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	16, 130
BspMI	ACCTGC	1 cut(s)	196
BssMI	GATC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	24, 117
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 140, 161, 170
BstNSI	RCATGY	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	135, 254
CviJI	RGCY	8 cut(s)	8, 22, 28, 44, 122, 143, 155, 164
CviKI_1	RGCY	8 cut(s)	8, 22, 28, 44, 122, 143, 155, 164
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	24, 117
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	230
FaeI	CATG	2 cut(s)	138, 257
FaiI	YATR	8 cut(s)	32, 84, 107, 136, 185, 220, 255, 268
FatI	CATG	2 cut(s)	134, 253
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	138, 257
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	113
HpaI	GTTAAC	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	194, 211, 237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 140, 161, 170
HpyF3I	CTNAG	2 cut(s)	24, 117
Hsp92II	CATG	2 cut(s)	138, 257
HspAI	GCGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	36, 42, 104, 160, 201
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MluCI	AATT	2 cut(s)	52, 238
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	55, 154, 253
MseI	TTAA	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	14, 140, 161, 170
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	138, 257
NspI	RCATGY	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	230
SetI	ASST	5 cut(s)	10, 157, 166, 190, 264
SinI	GGWCC	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	52, 238
SseBI	AGGCCT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	122
TasI	AATT	2 cut(s)	52, 238
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.