Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014812

Physical Location & Seq

Genomic Coordinates Forward (+)

28169209 .. 28170896

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACGATAACGAAACAGAGACAACCAAAACGGAAAATCGACGACCGGCCAAAACAGAGGTGGGCAACGTCGGTGGACGCCGCTAATCAGAAATCAAAGATGGGAGCTTTGACGGCAAAGCCTGAGCCTATGCGTTTGGAAGCCTCTCCAAATTCTGGTGTATTTGTTAACTTTATTGACTATGGCGCTGTTGGAAATGGTCTTATAGATGATTCTCAGGCCTTCGCAAAAGCATGGAGAGCCTCCTGCCTAGCTACTCAAGCTGTTCAAGCAAAGATCGTCATACCTGCTGCAAAAACTTTCCTATTGCAACCGACATATTTCAATGGTCCTTGCAATTCAAACTCCGTACATGTTGAGGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

122

Amino Acids

13.38

Weight (kDa)

9.88

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014812)

Species	Orthologous Gene IDs
malus_domestica	MD03G1260900.v1.1
pyrus_communis	pycom15g11180
rosa_chinensis	RchiOBHm_Chr2g0146311 RchiOBHm_Chr3g0481611
rosa_multiflora	Rmu_sc0010155.1_g000002 Rmu_ssc0000420.1_g000030
rosa_roxburghii	Rroxscaffold_153G00436760 Rroxscaffold_1G00032790 Rroxscaffold_2G00104840
rosa_rugosa	Rorug06G0113100
rosa_samantha	Rh2AG413400 Rh2DG433300 Rh4CG317800 Rh4DG260000 Rh4DG299500
rosa_wichuraiana	Rw4G022340 Rw4G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	269, 325, 342
AluBI	AGCT	3 cut(s)	107, 254, 263
AluI	AGCT	3 cut(s)	107, 254, 263
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	47, 219
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	81, 291
BlsI	GCNGC	2 cut(s)	82, 292
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	114, 230
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	49, 221
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	49, 221
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	49, 221
BspCNI	CTCAG	2 cut(s)	115, 229
BspMI	ACCTGC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	123, 216
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 239, 260, 269
BstNSI	RCATGY	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	49, 221
BveI	ACCTGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	350
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	2 cut(s)	234, 353
CviJI	RGCY	9 cut(s)	49, 107, 121, 127, 143, 221, 242, 254, 263
CviKI_1	RGCY	9 cut(s)	49, 107, 121, 127, 143, 221, 242, 254, 263
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	123, 216
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	329
FaeI	CATG	2 cut(s)	237, 356
FaiI	YATR	7 cut(s)	131, 183, 206, 235, 284, 319, 354
FatI	CATG	2 cut(s)	233, 352
Fnu4HI	GCNGC	2 cut(s)	81, 291
Fsp4HI	GCNGC	2 cut(s)	81, 291
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	81, 291
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	49, 221
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	237, 356
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	212
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	76, 169
Hpy188I	TCNGA	1 cut(s)	90
Hpy8I	GTNNAC	2 cut(s)	76, 169
Hpy99I	CGWCG	2 cut(s)	44, 73
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	293, 310, 336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 239, 260, 269
HpyF3I	CTNAG	2 cut(s)	123, 216
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	237, 356
HspAI	GCGC	1 cut(s)	186
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	6 cut(s)	59, 135, 141, 203, 259, 300
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	68
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MluCI	AATT	2 cut(s)	151, 337
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	51, 154, 253, 352
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	113, 239, 260, 269
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	237, 356
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	221
PciI	ACATGT	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	82, 292
PscI	ACATGT	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	81, 291
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	329
SetI	ASST	7 cut(s)	62, 71, 109, 256, 265, 289, 363
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	151, 337
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	151, 337
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	1 cut(s)	290
TspGWI	ACGGA	2 cut(s)	46, 337
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.