Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014812

Physical Location & Seq

Genomic Coordinates Forward (+)

47134117 .. 47139381

Gene Structure 5265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACAGTAACGAAACAGAGACAACCAAAATGGAAAATCGATTACCGGCCAAAACGGAGGTGGACAAAGTCGGGGGACGCCGCTAATCACAAGTCAAAGACGGGAGCTTTGGCGGCAAAGCCTGAGCCTCTGCGTTTGGAAGCCTCTCCAAATTCTGGTGTATCTGTTAACGTTACTGACTATGGCGCTGTTGGAAATAGTCTTATAGATGATTCTCAGGCTTTCACAAAAGCATGGAGAGCCTCCTGCCTAGCTACTCAAGCTGATCAAGGAAAGATTGTCATGCCTGCTGCAAAAACTTTCCTGTTGCAACCGACAGATTTCAAACTCCCGTACATGTTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

115

Amino Acids

12.74

Weight (kDa)

10.06

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014812)

Species	Orthologous Gene IDs
malus_domestica	MD03G1260900.v1.1
pyrus_communis	pycom15g11180
rosa_chinensis	RchiOBHm_Chr2g0146311 RchiOBHm_Chr3g0481611
rosa_multiflora	Rmu_sc0010155.1_g000002 Rmu_ssc0000420.1_g000030
rosa_roxburghii	Rroxscaffold_153G00436760 Rroxscaffold_1G00032790 Rroxscaffold_2G00104840
rosa_rugosa	Rorug06G0113100
rosa_samantha	Rh2AG413400 Rh2DG433300 Rh4CG317800 Rh4DG260000 Rh4DG299500
rosa_wichuraiana	Rw4G022340 Rw4G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	2 cut(s)	81, 113
AclI	AACGTT	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	3 cut(s)	107, 254, 263
AluI	AGCT	3 cut(s)	107, 254, 263
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspLEI	GCGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	3 cut(s)	81, 114, 291
BlsI	GCNGC	3 cut(s)	82, 115, 292
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	114, 230
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	81, 113
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	115, 229
BspDI	ATCGAT	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	7
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	123, 216
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 239, 260
BstNSI	RCATGY	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	234, 283, 337
CviJI	RGCY	9 cut(s)	49, 107, 121, 127, 143, 221, 242, 254, 263
CviKI_1	RGCY	9 cut(s)	49, 107, 121, 127, 143, 221, 242, 254, 263
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	123, 216
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	47
FaeI	CATG	3 cut(s)	237, 286, 340
FaiI	YATR	5 cut(s)	183, 206, 235, 284, 338
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	233, 282, 336
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	81, 114, 291
Fsp4HI	GCNGC	3 cut(s)	81, 114, 291
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	3 cut(s)	81, 114, 291
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	237, 286, 340
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	212
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	63, 169
Hpy8I	GTNNAC	2 cut(s)	63, 169
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	293, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 239, 260
HpyF3I	CTNAG	2 cut(s)	123, 216
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	237, 286, 340
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	59, 135, 141, 203, 259, 300, 317
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	7, 172
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MluCI	AATT	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	51, 138, 154, 253, 336
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	113, 239, 260
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	237, 286, 340
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	212
PflFI	GACNNNGTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	82, 115, 292
PscI	ACATGT	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	81, 114, 291
Sau3AI	GATC	1 cut(s)	265
SetI	ASST	6 cut(s)	62, 109, 174, 256, 265, 347
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	81, 113
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	151
TauI	GCSGC	2 cut(s)	83, 116
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.