Rh4DG299500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014812
Physical Location & Seq
Reverse (-)
52147536 .. 52164836
17301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG299500.1

Sequence Viewer

Length: 366 bp
ATGACGATAACGAAACAGAGACAACCAAAACGGAAAATCAGCGACAGGCCAAAACAGAGGTGGGCAACGTCGGGGGACGCCGCTAATCACAAGTCAAAGACGGGAGCTTTGACGGCAAAGCCTGAGCCTCTGCGTTTGGAAGCCTCTCCAAATTCTGAAGGACGAGAATTTAGGCAATTGGGGAGTGGAGATATGGAATCACTTGGCATGGATTTGCAAAGGTACCAGTTTTGTCGATTATTTCATTCTAAGCACATAAACTTTCTTGAAGTGGGATCAATCCAATTACTATACCCTGTTAGTAGACAATTGAGCTATGTAATATGGACATTTTTAGCAACTAGTGCAATGCTCTTCAGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.84

Weight (kDa)

10.22

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 304
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 151, 167
AcuI CTGAAG 2 cut(s) 177, 340
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 269
AhlI ACTAGT 1 cut(s) 341
AluBI AGCT 2 cut(s) 107, 315
AluI AGCT 2 cut(s) 107, 315
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 283
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 151, 167
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
Asp718I GGTACC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 13
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 275
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 283
BspQI GCTCTTC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 1 cut(s) 226
BssMI GATC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 359
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 123, 249
BstKTI GATC 1 cut(s) 278
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 113, 344
BsuRI GGCC 1 cut(s) 49
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 208
CviJI RGCY 6 cut(s) 49, 107, 121, 127, 143, 315
CviKI_1 RGCY 6 cut(s) 49, 107, 121, 127, 143, 315
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 123, 249
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 177, 340
FaeI CATG 1 cut(s) 211
FaiI YATR 6 cut(s) 194, 209, 257, 292, 318, 325
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 207
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 49
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 211
HinfI GANTC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 157, 359
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 217, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 344
HpyF3I CTNAG 2 cut(s) 123, 249
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 211
KpnI GGTACC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 275
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 31, 135, 239, 309
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MboII GAAGA 1 cut(s) 346
MfeI CAATTG 2 cut(s) 176, 308
MluCI AATT 5 cut(s) 151, 167, 176, 284, 308
MnlI CCTC 4 cut(s) 51, 138, 154, 353
MunI CAATTG 2 cut(s) 176, 308
MwoI GCNNNNNNNGC 2 cut(s) 113, 344
NdeII GATC 1 cut(s) 275
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 224
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 359
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 275
SetI ASST 5 cut(s) 62, 71, 109, 224, 317
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 5 cut(s) 151, 167, 176, 284, 308
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 342
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 235
TasI AATT 5 cut(s) 151, 167, 176, 284, 308
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 46
XapI RAATTY 2 cut(s) 151, 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.