Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010845

Physical Location & Seq

Genomic Coordinates Reverse (-)

16409212 .. 16413870

Gene Structure 4659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGGAGTTTTTAGGTGTCGGAATTCGGAAAAGCTATGGAGGTTTGTGGGCTAAATTGGCAATTTTACTGGTTCTGTGTACTATTGAAGGAGCGGTGTGCGATTCGGACTATTTGATTGGGCTCGGAAGCTATGACATCACCGGACCGGCGGCTGATGTCAATATGATGGGGTATGCTAACACGGAGCAGATCGCTTCCGGAGTTCACTTCAGGCTGCGAGCTCGCTCCTTCATTGTGGCGGAGCCGAAGGGCAACCGAGTGGTGTTTGTGAATCTTGATGCTTGCATGGCCTCGCAGCTTGTGAAATTGAAAGTTATTGAGAGGTTGAAGGCAAGGTATGGGGATCTATACACTGAGAAGAATGTCGCTATTAGTGGAATTCACACCCATGCTGGCCCTGGGGGTTATCTACAGTATATTGTGTATATTGTAACATCTCTCGGGTTCGTGCGTCAGTCATTTGATGCCCTTGTTGATGGCATTGAGCAAAGTGTTATTCAAGCCCATGAAAATCTTGCGCCAGGATCAGTTTTTATTAATAAGGGAGAAATCTTAGATGCTGGAGTAAACCGTAGTCCTAGTGCTTATCTCAATAATCCTGCAGCAGAGCGCAGTAAATACAAATATGATGTCGATAAAGAAATGACTCTTCTGAAGTTTGTCGATACTCAATGGGGTCCAGTGGGTAGCTTCAATTGGTTTGCAACTCATGGAACTTCTATGAGTCGGACAAACTCATTAATTAGTGGGGATAACAAGGGTGCTGCTGCACGATTTATGGAAGACTGGTTTGAGGAGAATGGTGGTAGAAGTGCATATTCTGATGATATTGATGCTGCCGATATACCGCGAAGAACCATGAGTTATTGGAGCTTGCTGCATCCCTTTCAGTCTCCTCCTGGTAAGCCAGCTACCAGCCCAAATGTTCTAGGAGCTTTCTGCACAGATACTGGGCTACCTTGTGATTTCAATCACAGCACCTGTGGTGGGAAGAATGAGTTGTGCTATGGCCGAGGACCGGGTTACCCAGATGAATTTGAGAGTACGCGTATTATTGGTGAGAGGCAACTCAGAAAAGCGGTGGATCTTTTCAACAAAGCATCTGAACAGTTGACTGGGAAGGTGGTAAAGACATGTCCTGCTGCAATGGGGTTTGGATTTGCTGCTGGAACTACTGACGGACCTGGAGCTTTTGATTTCAAGCAAGGGGATGATAAGGGAAATCCTTTCTGGAAATTGGTGCGCAATGTACTCAAAACACCAGGCCAGGAACAGATTGATTGTCAGAGTCCAAAGCCAATCTTGCTTGATACTGGTGAAATGAAGCAACCATATGACTGGGCGCCTTCAATACTTCCAATTCAGATCTTCCGGATAGGGCAGCTTGTCATTCTCAGTGTACCTGGAGAATTTACAACAATGGCTGGTAGGCGGCTCCGTGATGCTGTGAAAACCGTACTGACTAGTGGTGGTCATGGTGGAAATATTCATGTTGTGCTAGCAGGATTGACTAATACATATTCTCAGTATATCACGACCTTTGAAGAGTATGAGGTGCAGAGATATGAGGGTGCATCCACTCTCTATGGACCACACACGCTAAGTGCCTACATTCAGGAGTTCAAGAAGCTTGCTACAGCTCTCATCAGTAACCAACCTGTCGCATCAGGTCCACAACCCCCAGATCTCCTTGATAAGCAGATAAGCTTGCTTACTCCAGTTGTTATGGATGCAACCCCTGTTGGTGTCAGTTTTGGGGATTGCAGTTCGGATGTGCCTCAAAACTCCACCTTTAAGAGAGGTCATGACATGGTAACAGTTACCTTCTGGTCGGCATGTCCTCGGAATGACCTATTGACGGAAGGTACATTTGCCCTTGTGGAGATTCTCCATGGAAAGGATACTTGGGTTCCAGCTTACGATGACGATGATTTCTGTCTGCGCTTTAAAGTGGTCAAGACCTTCCAAACTCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0031090 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050896 GO:0051716 GO:0055082 GO:0055088 GO:0065007 GO:0065008 GO:0070887 GO:0090156 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

Ceramidase_alk Ceramidse_alk_C

Protein Analysis

659

Amino Acids

72.15

Weight (kDa)

5.72

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ceramidase_alk	PF04734	37 - 375	8.6e-129	Neutral/alkaline non-lysosomal ceramidase, N-terminal
Ceramidase_alk	PF04734	373 - 539	6e-78	Neutral/alkaline non-lysosomal ceramidase, N-terminal
Ceramidse_alk_C	PF17048	541 - 654	4.7e-31	Neutral/alkaline non-lysosomal ceramidase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07380 AT1G07380 AT5G58980
fragaria_vesca	FvH4_3g37680
malus_domestica	MD03G1079000.v1.1
prunus_persica	Prupe.6G063600_v2.0.a1
pyrus_communis	pycom03g06300
rosa_chinensis	RchiOBHm_Chr5g0067951
rosa_laevigata	RLG00000035946
rosa_multiflora	Rmu_sc0000435.1_g000039
rosa_roxburghii	Rroxscaffold_1G00012650 Rroxscaffold_1G00013360
rosa_rugosa	Rorug05G0386600 Rorug05G0386700
rosa_samantha	Rh5AG445600 Rh5BG463100 Rh5CG485000 Rh5DG477100
rosa_wichuraiana	Rw0G015370 Rw5G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1244
AccB1I	GGYRCC	1 cut(s)	1342
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	2 cut(s)	850, 1048
AccIII	TCCGGA	2 cut(s)	197, 1371
AciI	CCGC	6 cut(s)	92, 149, 239, 848, 1079, 1432
AclWI	GGATC	3 cut(s)	351, 532, 1092
AcoI	YGGCCR	1 cut(s)	1009
AcsI	RAATTY	4 cut(s)	21, 378, 1034, 1409
AcuI	CTGAAG	2 cut(s)	193, 674
AcyI	GRCGYC	1 cut(s)	1343
AfaI	GTAC	7 cut(s)	79, 1045, 1251, 1401, 1458, 1867, 1976
AfiI	CCNNNNNNNGG	4 cut(s)	987, 1018, 1858, 1897
AflIII	ACRYGT	2 cut(s)	1046, 1133
AhlI	ACTAGT	1 cut(s)	1463
AjnI	CCWGG	7 cut(s)	397, 520, 898, 1183, 1261, 1266, 1402
AjuI	GAANNNNNNNTTGG	2 cut(s)	1888, 1920
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	897
AlwI	GGATC	3 cut(s)	351, 532, 1092
AlwNI	CAGNNNCTG	2 cut(s)	950, 981
Ama87I	CYCGRG	1 cut(s)	440
Aor13HI	TCCGGA	2 cut(s)	197, 1371
AoxI	GGCC	4 cut(s)	288, 394, 1009, 1264
ApoI	RAATTY	4 cut(s)	21, 378, 1034, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AseI	ATTAAT	2 cut(s)	537, 740
AspLEI	GCGC	5 cut(s)	520, 612, 1245, 1345, 1944
AspS9I	GGNCC	7 cut(s)	143, 395, 677, 1016, 1181, 1589, 1670
AsuC2I	CCSGG	1 cut(s)	1020
AsuHPI	GGTGA	3 cut(s)	130, 1070, 1328
AsuNHI	GCTAGC	1 cut(s)	1498
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	6 cut(s)	143, 677, 1016, 1181, 1589, 1670
BaeI	ACNNNNGTAYC	2 cut(s)	1893, 1926
BanI	GGYRCC	1 cut(s)	1342
BanII	GRGCYC	2 cut(s)	123, 223
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	2 cut(s)	160, 470
BciT130I	CCWGG	7 cut(s)	399, 522, 900, 1185, 1263, 1268, 1404
BciVI	GTATCC	1 cut(s)	1894
BcnI	CCSGG	1 cut(s)	1020
BcoDI	GTCTC	1 cut(s)	897
BcuI	ACTAGT	1 cut(s)	1463
BfaI	CTAG	5 cut(s)	579, 929, 1464, 1499, 1978
BfmI	CTRYAG	3 cut(s)	410, 600, 1635
BfoI	RGCGCY	1 cut(s)	1346
BfuI	GTATCC	1 cut(s)	1894
BglII	AGATCT	2 cut(s)	1365, 1684
BmcAI	AGTACT	1 cut(s)	1976
Bme1390I	CCNGG	8 cut(s)	399, 522, 900, 1020, 1185, 1263, 1268, 1404
Bme18I	GGWCC	6 cut(s)	143, 677, 1016, 1181, 1589, 1670
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	7 cut(s)	143, 395, 677, 1016, 1181, 1589, 1670
BmiI	GGNNCC	5 cut(s)	243, 678, 1344, 1436, 1911
BmrFI	CCNGG	8 cut(s)	399, 522, 900, 1020, 1185, 1263, 1268, 1404
BmrI	ACTGGG	3 cut(s)	960, 1125, 1348
BmtI	GCTAGC	1 cut(s)	1502
BmuI	ACTGGG	3 cut(s)	960, 1125, 1348
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	4 cut(s)	582, 1206, 1425, 1701
BpuMI	CCSGG	1 cut(s)	1020
BsaBI	GATNNNNATC	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	1343
BsaJI	CCNNGG	5 cut(s)	397, 398, 1012, 1841, 1891
BsaWI	WCCGGW	3 cut(s)	140, 197, 1371
Bsc4I	CCNNNNNNNGG	4 cut(s)	987, 1018, 1858, 1897
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	8 cut(s)	72, 680, 791, 955, 1120, 1318, 1343, 1718
Bse3DI	GCAATG	2 cut(s)	1152, 1252
Bse8I	GATNNNNATC	1 cut(s)	969
BseAI	TCCGGA	2 cut(s)	197, 1371
BseBI	CCWGG	7 cut(s)	399, 522, 900, 1185, 1263, 1268, 1404
BseDI	CCNNGG	5 cut(s)	397, 398, 1012, 1841, 1891
BseGI	GGATG	5 cut(s)	880, 1216, 1574, 1735, 1777
BseJI	GATNNNNATC	1 cut(s)	969
BseLI	CCNNNNNNNGG	4 cut(s)	987, 1018, 1858, 1897
BseMI	GCAATG	2 cut(s)	1152, 1252
BseMII	CTCAG	4 cut(s)	345, 1084, 1408, 1538
BseNI	ACTGG	8 cut(s)	72, 680, 791, 955, 1120, 1318, 1343, 1718
BseRI	GAGGAG	2 cut(s)	809, 885
BsgI	GTGCAG	3 cut(s)	753, 925, 1577
Bsh1236I	CGCG	2 cut(s)	850, 1048
BshFI	GGCC	4 cut(s)	290, 396, 1011, 1266
BshNI	GGYRCC	1 cut(s)	1342
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	5 cut(s)	141, 146, 198, 1019, 1372
BslI	CCNNNNNNNGG	4 cut(s)	987, 1018, 1858, 1897
BsmAI	GTCTC	1 cut(s)	897
BsnI	GGCC	4 cut(s)	290, 396, 1011, 1266
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	123, 223
Bsp13I	TCCGGA	2 cut(s)	197, 1371
Bsp143I	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
Bsp19I	CCATGG	1 cut(s)	1891
BspACI	CCGC	6 cut(s)	92, 149, 239, 848, 1079, 1432
BspANI	GGCC	4 cut(s)	290, 396, 1011, 1266
BspCNI	CTCAG	4 cut(s)	346, 1083, 1407, 1537
BspEI	TCCGGA	2 cut(s)	197, 1371
BspFNI	CGCG	2 cut(s)	850, 1048
BspHI	TCATGA	1 cut(s)	1804
BspLI	GGNNCC	5 cut(s)	243, 678, 1344, 1436, 1911
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	1502
BspPI	GGATC	3 cut(s)	351, 532, 1092
BspT107I	GGYRCC	1 cut(s)	1342
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	1152, 1252
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	8 cut(s)	72, 680, 791, 955, 1120, 1318, 1343, 1718
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	5 cut(s)	397, 398, 1012, 1841, 1891
BssMI	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
BssNI	GRCGYC	1 cut(s)	1343
BssT1I	CCWWGG	1 cut(s)	1891
Bst2UI	CCWGG	7 cut(s)	399, 522, 900, 1185, 1263, 1268, 1404
Bst4CI	ACNGT	5 cut(s)	414, 572, 1110, 1456, 1819
Bst6I	CTCTTC	2 cut(s)	654, 1539
BstACI	GRCGYC	1 cut(s)	1343
BstC8I	GCNNGC	9 cut(s)	219, 223, 283, 394, 875, 909, 1500, 1632, 1709
BstDEI	CTNAG	7 cut(s)	354, 553, 1070, 1394, 1524, 1601, 1971
BstDSI	CCRYGG	1 cut(s)	1891
BstEII	GGTNACC	1 cut(s)	1022
BstF5I	GGATG	5 cut(s)	880, 1216, 1574, 1735, 1777
BstFNI	CGCG	2 cut(s)	850, 1048
BstH2I	RGCGCY	1 cut(s)	1346
BstHHI	GCGC	5 cut(s)	520, 612, 1245, 1345, 1944
BstKTI	GATC	6 cut(s)	192, 346, 527, 1087, 1368, 1687
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 287, 1303
BstNI	CCWGG	7 cut(s)	399, 522, 900, 1185, 1263, 1268, 1404
BstNSI	RCATGY	2 cut(s)	1137, 1839
BstPI	GGTNACC	1 cut(s)	1022
BstSCI	CCNGG	8 cut(s)	397, 520, 898, 1018, 1183, 1261, 1266, 1402
BstSFI	CTRYAG	3 cut(s)	410, 600, 1635
BstUI	CGCG	2 cut(s)	850, 1048
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	4 cut(s)	343, 1084, 1365, 1684
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	4 cut(s)	343, 1084, 1365, 1684
BsuI	GTATCC	1 cut(s)	1894
BsuRI	GGCC	4 cut(s)	290, 396, 1011, 1266
BtgI	CCRYGG	1 cut(s)	1891
BtsCI	GGATG	5 cut(s)	880, 1216, 1574, 1735, 1777
BtsIMutI	CAGTG	3 cut(s)	351, 687, 1402
Cac8I	GCNNGC	9 cut(s)	219, 223, 283, 394, 875, 909, 1500, 1632, 1709
CaiI	CAGNNNCTG	2 cut(s)	950, 981
CciI	TCATGA	1 cut(s)	1804
CfoI	GCGC	5 cut(s)	520, 612, 1245, 1345, 1944
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	7 cut(s)	143, 395, 677, 1016, 1181, 1589, 1670
CpoI	CGGWCCG	1 cut(s)	143
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	7 cut(s)	78, 1044, 1250, 1400, 1457, 1866, 1975
CspI	CGGWCCG	1 cut(s)	143
CviQI	GTAC	7 cut(s)	78, 1044, 1250, 1400, 1457, 1866, 1975
DdeI	CTNAG	7 cut(s)	354, 553, 1070, 1394, 1524, 1601, 1971
DinI	GGCGCC	1 cut(s)	1344
DpnI	GATC	6 cut(s)	191, 345, 526, 1086, 1367, 1686
DpnII	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
DraI	TTTAAA	1 cut(s)	1948
EaeI	YGGCCR	1 cut(s)	1009
Eam1104I	CTCTTC	2 cut(s)	654, 1539
EarI	CTCTTC	2 cut(s)	654, 1539
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	1891
Eco24I	GRGCYC	2 cut(s)	123, 223
Eco47I	GGWCC	6 cut(s)	143, 677, 1016, 1181, 1589, 1670
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	193, 674
Eco88I	CYCGRG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	1022
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	1022
EcoRI	GAATTC	2 cut(s)	21, 378
EcoRII	CCWGG	7 cut(s)	397, 520, 898, 1183, 1261, 1266, 1402
EcoT14I	CCWWGG	1 cut(s)	1891
EcoT38I	GRGCYC	2 cut(s)	123, 223
EgeI	GGCGCC	1 cut(s)	1344
EheI	GGCGCC	1 cut(s)	1344
ErhI	CCWWGG	1 cut(s)	1891
FalI	AAGNNNNNCTT	2 cut(s)	1286, 1318
FauNDI	CATATG	1 cut(s)	1333
FokI	GGATG	5 cut(s)	867, 1223, 1561, 1742, 1784
FriOI	GRGCYC	2 cut(s)	123, 223
FspBI	CTAG	5 cut(s)	579, 929, 1464, 1499, 1978
FspI	TGCGCA	1 cut(s)	1244
GlaI	GCGC	5 cut(s)	519, 611, 1244, 1344, 1943
GsuI	CTGGAG	4 cut(s)	582, 1206, 1425, 1701
HaeII	RGCGCY	1 cut(s)	1346
HaeIII	GGCC	4 cut(s)	290, 396, 1011, 1266
HapII	CCGG	5 cut(s)	141, 146, 198, 1019, 1372
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	5 cut(s)	520, 612, 1245, 1345, 1944
Hin1I	GRCGYC	1 cut(s)	1343
Hin6I	GCGC	5 cut(s)	518, 610, 1243, 1343, 1942
HinP1I	GCGC	5 cut(s)	518, 610, 1243, 1343, 1942
HincII	GTYRAC	1 cut(s)	1113
HindII	GTYRAC	1 cut(s)	1113
HindIII	AAGCTT	2 cut(s)	1628, 1705
HinfI	GANTC	6 cut(s)	101, 271, 646, 724, 1288, 1885
HpaII	CCGG	5 cut(s)	141, 146, 198, 1019, 1372
HphI	GGTGA	3 cut(s)	130, 1070, 1328
Hpy166II	GTNNAC	6 cut(s)	78, 205, 568, 1113, 1400, 1673
Hpy188III	TCNNGA	9 cut(s)	198, 275, 1231, 1372, 1534, 1616, 1624, 1805, 1957
Hpy8I	GTNNAC	6 cut(s)	78, 205, 568, 1113, 1400, 1673
HpyAV	CCTTC	9 cut(s)	80, 238, 241, 322, 1114, 1356, 1834, 1856, 1972
HpyCH4III	ACNGT	5 cut(s)	414, 572, 1110, 1456, 1819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 287, 1303
HpyF3I	CTNAG	7 cut(s)	354, 553, 1070, 1394, 1524, 1601, 1971
Hsp92I	GRCGYC	1 cut(s)	1343
HspAI	GCGC	5 cut(s)	518, 610, 1243, 1343, 1942
KasI	GGCGCC	1 cut(s)	1342
Kpn2I	TCCGGA	2 cut(s)	197, 1371
Kzo9I	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
LmnI	GCTCC	8 cut(s)	89, 184, 230, 241, 870, 932, 1187, 1440
MaeI	CTAG	5 cut(s)	579, 929, 1464, 1499, 1978
MaeIII	GTNAC	5 cut(s)	430, 1022, 1649, 1813, 1819
MalI	GATC	6 cut(s)	191, 345, 526, 1086, 1367, 1686
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
MboII	GAAGA	7 cut(s)	370, 641, 794, 864, 1003, 1360, 1556
MfeI	CAATTG	1 cut(s)	694
MflI	RGATCY	4 cut(s)	343, 1084, 1365, 1684
MhlI	GDGCHC	2 cut(s)	123, 223
MluI	ACGCGT	1 cut(s)	1046
Mly113I	GGCGCC	1 cut(s)	1343
MlyI	GAGTC	3 cut(s)	640, 733, 1297
MmeI	TCCRAC	1 cut(s)	707
MroI	TCCGGA	2 cut(s)	197, 1371
MseI	TTAA	4 cut(s)	537, 740, 1794, 1947
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	5 cut(s)	141, 146, 198, 1019, 1372
MspR9I	CCNGG	8 cut(s)	399, 522, 900, 1020, 1185, 1263, 1268, 1404
MunI	CAATTG	1 cut(s)	694
MvaI	CCWGG	7 cut(s)	399, 522, 900, 1185, 1263, 1268, 1404
MvnI	CGCG	2 cut(s)	850, 1048
MwoI	GCNNNNNNNGC	3 cut(s)	56, 287, 1303
NarI	GGCGCC	1 cut(s)	1343
NciI	CCSGG	1 cut(s)	1020
NcoI	CCATGG	1 cut(s)	1891
NdeI	CATATG	1 cut(s)	1333
NdeII	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
NheI	GCTAGC	1 cut(s)	1498
NlaIV	GGNNCC	5 cut(s)	243, 678, 1344, 1436, 1911
NmeAIII	GCCGAG	1 cut(s)	1037
NsbI	TGCGCA	1 cut(s)	1244
NspI	RCATGY	2 cut(s)	1137, 1839
PagI	TCATGA	1 cut(s)	1804
PasI	CCCWGGG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	1133
PfeI	GAWTC	3 cut(s)	101, 271, 1885
PleI	GAGTC	3 cut(s)	640, 732, 1296
PluTI	GGCGCC	1 cut(s)	1346
PpsI	GAGTC	3 cut(s)	640, 732, 1296
PscI	ACATGT	1 cut(s)	1133
PshBI	ATTAAT	2 cut(s)	537, 740
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	7 cut(s)	397, 520, 898, 1183, 1261, 1266, 1402
PspEI	GGTNACC	1 cut(s)	1022
PspGI	CCWGG	7 cut(s)	397, 520, 898, 1183, 1261, 1266, 1402
PspN4I	GGNNCC	5 cut(s)	243, 678, 1344, 1436, 1911
PspPI	GGNCC	7 cut(s)	143, 395, 677, 1016, 1181, 1589, 1670
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	2 cut(s)	950, 981
PsuI	RGATCY	4 cut(s)	343, 1084, 1365, 1684
RsaI	GTAC	7 cut(s)	79, 1045, 1251, 1401, 1458, 1867, 1976
RsaNI	GTAC	7 cut(s)	78, 1044, 1250, 1400, 1457, 1866, 1975
RseI	CAYNNNNRTG	1 cut(s)	387
Rsr2I	CGGWCCG	1 cut(s)	143
RsrII	CGGWCCG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	537, 740, 1794, 1947
Sau3AI	GATC	6 cut(s)	189, 343, 524, 1084, 1365, 1684
Sau96I	GGNCC	7 cut(s)	143, 395, 677, 1016, 1181, 1589, 1670
ScaI	AGTACT	1 cut(s)	1976
SchI	GAGTC	3 cut(s)	640, 733, 1297
ScrFI	CCNGG	8 cut(s)	399, 522, 900, 1020, 1185, 1263, 1268, 1404
SduI	GDGCHC	2 cut(s)	123, 223
SfcI	CTRYAG	3 cut(s)	410, 600, 1635
SfoI	GGCGCC	1 cut(s)	1344
SinI	GGWCC	6 cut(s)	143, 677, 1016, 1181, 1589, 1670
SmiMI	CAYNNNNRTG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	1463
SsiI	CCGC	6 cut(s)	92, 149, 239, 848, 1079, 1432
SspDI	GGCGCC	1 cut(s)	1342
SspI	AATATT	1 cut(s)	1486
SspMI	CTAG	5 cut(s)	579, 929, 1464, 1499, 1978
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	8 cut(s)	397, 520, 898, 1018, 1183, 1261, 1266, 1402
StyI	CCWWGG	1 cut(s)	1891
TaaI	ACNGT	5 cut(s)	414, 572, 1110, 1456, 1819
TaqI	TCGA	2 cut(s)	633, 663
TatI	WGTACW	3 cut(s)	77, 1249, 1974
TauI	GCSGC	2 cut(s)	152, 1435
TfiI	GAWTC	3 cut(s)	101, 271, 1885
Tru1I	TTAA	4 cut(s)	537, 740, 1794, 1947
Tru9I	TTAA	4 cut(s)	537, 740, 1794, 1947
TscAI	CASTG	3 cut(s)	358, 687, 1402
TspDTI	ATGAA	5 cut(s)	220, 522, 1047, 1337, 1478
TspGWI	ACGGA	4 cut(s)	197, 1194, 1427, 1874
TspRI	CASTG	3 cut(s)	358, 687, 1402
VpaK11BI	GGWCC	6 cut(s)	143, 677, 1016, 1181, 1589, 1670
VspI	ATTAAT	2 cut(s)	537, 740
XapI	RAATTY	4 cut(s)	21, 378, 1034, 1409
XceI	RCATGY	2 cut(s)	1137, 1839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XspI	CTAG	5 cut(s)	579, 929, 1464, 1499, 1978
ZrmI	AGTACT	1 cut(s)	1976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.