Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002934

Physical Location & Seq

Genomic Coordinates Reverse (-)

20877590 .. 20884106

Gene Structure 6517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCACATAAAGTTATTAAAATCAACACATCCTTGGAGAAATTGATTAATATGGCAAGTGCTATTGAGTTGAGTGCTAAGCCGTCCATTTATGCAATAAGCTCCAATGGTCAAAGAATTGACCGGGAAACATACTCTCATTTTGAAGAAAGCCAAGAACCCTTTACAATCAAGGACGATTGCTCTCTTTTCCTTTGCAATCGTGATGCCGTTTCGGGTCTAGCATTTTCGAGCGGCATCCTTCGGCAGCTGCAAACCGTGCTCTTCCGAAATTTTTTTAACTATGTCGGAAGGTGGTGGTCTGGGATCGACGATGATCTCGAGCGGTTGGACGAGTTTTGGTTGAAAATTCAGTCTCGATCGACGACGTTGAAAACAAGCACTCTATGTCCAAAGCCTCGCAATCTGTTAATCGAAGATTGCAAGGCCGTTCGAGTGTCGCAAACGAAGAAGAGGGTAGGGAACATTGAGCCGTCCGGTCTCAAGGTCGAAACGAAGAAGAGGGTAGGGAACTTGGATGTTGGATTGAATGGTTACCGGGACATGACTAAGAAACCTGCTCGATTGCCCCATCTCTTCCCGTCGCTCGTTCGCAATCGAATGAAGGAGGGAATAGATCGATCCGGAAGTTGTTGGCCCCTCAAGCCGACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04014 map03460 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

218

Amino Acids

24.85

Weight (kDa)

9.63

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48190 AT3G48190 AT3G48190
fragaria_vesca	FvH4_2g11670
malus_domestica	MD06G1173700.v1.1
prunus_persica	Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1
pyrus_communis	pycom05g15080 pycom06g15490 pycom16g13670
rosa_chinensis	RchiOBHm_Chr6g0271131
rosa_laevigata	RLG00000013743
rosa_multiflora	Rmu_sc0004675.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233860 Rroxscaffold_4G00324410 Rroxscaffold_4G00324420 Rroxscaffold_5G00346090 Rroxscaffold_5G00348130 Rroxscaffold_5G00348580 Rroxscaffold_5G00348590 Rroxscaffold_5G00385810 Rroxscaffold_6G00394020 Rroxscaffold_7G00197250 Rroxscaffold_8G00436820
rosa_rugosa	Rorug06G0058900
rosa_samantha	Rh6AG178600 Rh6BG182100 Rh6CG177800 Rh6DG169700
rosa_wichuraiana	Rw6G015260 Rw6G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccBSI	CCGCTC	2 cut(s)	234, 325
AccIII	TCCGGA	1 cut(s)	623
AciI	CCGC	2 cut(s)	234, 325
AclWI	GGATC	2 cut(s)	314, 615
AcsI	RAATTY	2 cut(s)	271, 348
AgsI	TTSAA	4 cut(s)	146, 346, 373, 529
AluBI	AGCT	2 cut(s)	102, 250
AluI	AGCT	2 cut(s)	102, 250
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	360, 485
AlwI	GGATC	2 cut(s)	314, 615
Ama87I	CYCGRG	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	623
AoxI	GGCC	2 cut(s)	426, 635
ApeKI	GCWGC	2 cut(s)	247, 250
ApoI	RAATTY	2 cut(s)	271, 348
AseI	ATTAAT	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	636
AsuC2I	CCSGG	2 cut(s)	125, 539
AvaI	CYCGRG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	237, 259
BccI	CCATC	1 cut(s)	579
BceAI	ACGGC	4 cut(s)	67, 194, 413, 457
BcnI	CCSGG	2 cut(s)	125, 539
BcoDI	GTCTC	2 cut(s)	360, 485
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	3 cut(s)	235, 248, 251
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	3 cut(s)	236, 249, 252
Bme1390I	CCNGG	2 cut(s)	125, 539
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	636
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	2 cut(s)	125, 539
BmsI	GCATC	2 cut(s)	196, 246
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	467, 626
BpuMI	CCSGG	2 cut(s)	125, 539
Bsa29I	ATCGAT	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	476, 623
BseAI	TCCGGA	1 cut(s)	623
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	29, 237, 523
BseXI	GCAGC	2 cut(s)	237, 259
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	428, 637
BshVI	ATCGAT	1 cut(s)	619
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	124, 477, 538, 624
BslFI	GGGAC	1 cut(s)	554
BsmAI	GTCTC	2 cut(s)	360, 485
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	428, 637
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	623
Bsp143I	GATC	5 cut(s)	306, 316, 359, 616, 620
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	234, 325
BspANI	GGCC	2 cut(s)	428, 637
BspDI	ATCGAT	1 cut(s)	619
BspEI	TCCGGA	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	2 cut(s)	314, 615
BspQI	GCTCTTC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	485
BsrBI	CCGCTC	2 cut(s)	234, 325
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	5 cut(s)	306, 316, 359, 616, 620
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	269, 446, 494, 581
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	78, 549
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	29, 237, 523
BstKTI	GATC	5 cut(s)	309, 319, 362, 619, 623
BstMAI	GTCTC	2 cut(s)	360, 485
BstMBI	GATC	5 cut(s)	306, 316, 359, 616, 620
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 643
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	123, 537
BstV1I	GCAGC	2 cut(s)	237, 259
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	428, 637
BsuTUI	ATCGAT	1 cut(s)	619
BtsCI	GGATG	3 cut(s)	29, 237, 523
BveI	ACCTGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	636
ClaI	ATCGAT	1 cut(s)	619
CviAII	CATG	1 cut(s)	544
CviJI	RGCY	9 cut(s)	82, 102, 153, 250, 397, 428, 472, 637, 646
CviKI_1	RGCY	9 cut(s)	82, 102, 153, 250, 397, 428, 472, 637, 646
DdeI	CTNAG	2 cut(s)	78, 549
DpnI	GATC	5 cut(s)	308, 318, 361, 618, 622
DpnII	GATC	5 cut(s)	306, 316, 359, 616, 620
Eam1104I	CTCTTC	4 cut(s)	269, 446, 494, 581
EarI	CTCTTC	4 cut(s)	269, 446, 494, 581
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	547
FaiI	YATR	7 cut(s)	9, 53, 93, 133, 285, 388, 545
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	235, 248, 251
FokI	GGATG	3 cut(s)	16, 224, 530
Fsp4HI	GCNGC	3 cut(s)	235, 248, 251
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	3 cut(s)	235, 248, 251
HaeIII	GGCC	2 cut(s)	428, 637
HapII	CCGG	4 cut(s)	124, 477, 538, 624
Hin1II	CATG	1 cut(s)	547
HpaII	CCGG	4 cut(s)	124, 477, 538, 624
Hpy188I	TCNGA	2 cut(s)	269, 290
Hpy188III	TCNNGA	4 cut(s)	203, 320, 357, 624
Hpy99I	CGWCG	4 cut(s)	314, 367, 370, 586
HpyAV	CCTTC	3 cut(s)	251, 285, 598
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	95, 198, 253, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 643
HpyF3I	CTNAG	2 cut(s)	78, 549
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	1 cut(s)	547
Kpn2I	TCCGGA	1 cut(s)	623
Kzo9I	GATC	5 cut(s)	306, 316, 359, 616, 620
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	137, 288, 490, 551, 570, 637
Lsp1109I	GCAGC	2 cut(s)	237, 259
LweI	GCATC	2 cut(s)	196, 246
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	5 cut(s)	308, 318, 361, 618, 622
MbiI	CCGCTC	2 cut(s)	234, 325
MboI	GATC	5 cut(s)	306, 316, 359, 616, 620
MboII	GAAGA	8 cut(s)	158, 256, 428, 460, 463, 508, 511, 568
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	4 cut(s)	41, 117, 271, 348
MmeI	TCCRAC	3 cut(s)	268, 309, 502
MnlI	CCTC	5 cut(s)	408, 447, 495, 601, 650
MroI	TCCGGA	1 cut(s)	623
MseI	TTAA	4 cut(s)	18, 48, 279, 410
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	4 cut(s)	124, 477, 538, 624
MspR9I	CCNGG	2 cut(s)	125, 539
MwoI	GCNNNNNNNGC	2 cut(s)	259, 643
NciI	CCSGG	2 cut(s)	125, 539
NdeII	GATC	5 cut(s)	306, 316, 359, 616, 620
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	236, 249, 252
Ple19I	CGATCG	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	636
PvuI	CGATCG	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	18, 48, 279, 410
SatI	GCNGC	3 cut(s)	235, 248, 251
Sau3AI	GATC	5 cut(s)	306, 316, 359, 616, 620
Sau96I	GGNCC	1 cut(s)	636
ScrFI	CCNGG	2 cut(s)	125, 539
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	104, 252, 296, 371, 489, 559
SfaNI	GCATC	2 cut(s)	196, 246
Sfr274I	CTCGAG	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	320, 482, 641
SmoI	CTYRAG	3 cut(s)	320, 482, 641
Sse9I	AATT	4 cut(s)	41, 117, 271, 348
SsiI	CCGC	2 cut(s)	234, 325
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	123, 537
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	371
TasI	AATT	4 cut(s)	41, 117, 271, 348
TauI	GCSGC	1 cut(s)	237
Tru1I	TTAA	4 cut(s)	18, 48, 279, 410
Tru9I	TTAA	4 cut(s)	18, 48, 279, 410
TseI	GCWGC	2 cut(s)	247, 250
TspDTI	ATGAA	1 cut(s)	617
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	2 cut(s)	271, 348
XhoI	CTCGAG	1 cut(s)	320
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.