Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002934

Physical Location & Seq

Genomic Coordinates Reverse (-)

14352649 .. 14359919

Gene Structure 7271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAAATCATTGTGGCCACTTGTTGCCAAAAGAAAAATCGGTGGGTGGGACTAGTGTTGATGTGGAAGAGACTAATGCGTCGAAGGATTGGTGTTCTTTTCCAAACGTGGGATGGACATGAGGAATTATTCAACGATATATGTTCCAACTTTGGTGTGATGTTGGTGGTATCCTCAAAAGAAAAACTTGTTACTGCAAGCAGCTGGGCTATGCAAGCGAGGTTTAAGTACTTGGAGGAGCTTTTAGGATCAATTCTCTTTAGTTGGGTTGCTTGTGGTGTAAGCCTCGCTGCACTTGTGGAGATACGGCAATTATTTGTATCGATTCCGAACCTAGTTACTTCATGCGTAAGAGATACGGGAGGGAAAAGGGAGCAGATGTGCTTCGAATTCTATTTTGCATCTTGCTCGGATATCGAGAATGAACGGGACAAACTCATCAAGAAGCATATGCATTTTCGAGCGGCATCCCTTCGGCAGCTGCAAATTATGCTCTTCCGAAATTTTATTAACTATGTCGGAAGGTGGTGGTACGGGATCGACGATGATCTCGAGCGGTTGGACGAGTTTGTTGAAAATTCGAGTCTACGATCGACGATATTGAAAACAAGCACTCTATGTCCAAAGCCTGCAATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko04064 ko04068 ko04110 ko04115 ko04210 ko04214 ko04218 ko05165 ko05166 ko05202 ko05206 map01524 map03440 map04064 map04068 map04110 map04115 map04210 map04214 map04218 map05165 map05166 map05202 map05206

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase PWWP

Protein Analysis

213

Amino Acids

24.83

Weight (kDa)

8.79

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48190 AT3G48190 AT3G48190
fragaria_vesca	FvH4_2g11670
malus_domestica	MD06G1173700.v1.1
prunus_persica	Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1
pyrus_communis	pycom05g15080 pycom06g15490 pycom16g13670
rosa_chinensis	RchiOBHm_Chr6g0271131
rosa_laevigata	RLG00000013743
rosa_multiflora	Rmu_sc0004675.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233860 Rroxscaffold_4G00324410 Rroxscaffold_4G00324420 Rroxscaffold_5G00346090 Rroxscaffold_5G00348130 Rroxscaffold_5G00348580 Rroxscaffold_5G00348590 Rroxscaffold_5G00385810 Rroxscaffold_6G00394020 Rroxscaffold_7G00197250 Rroxscaffold_8G00436820
rosa_rugosa	Rorug06G0058900
rosa_samantha	Rh6AG178600 Rh6BG182100 Rh6CG177800 Rh6DG169700
rosa_wichuraiana	Rw6G015260 Rw6G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AccBSI	CCGCTC	2 cut(s)	464, 556
AccI	GTMKAC	1 cut(s)	586
AciI	CCGC	2 cut(s)	464, 556
AclWI	GGATC	2 cut(s)	256, 545
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	3 cut(s)	389, 502, 577
AfaI	GTAC	2 cut(s)	230, 533
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	133, 575, 604
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	3 cut(s)	204, 241, 481
AluI	AGCT	3 cut(s)	204, 241, 481
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	256, 545
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	201, 290, 478, 481
ApoI	RAATTY	3 cut(s)	389, 502, 577
AsuII	TTCGAA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	17
BbvI	GCAGC	4 cut(s)	213, 277, 468, 490
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	2 cut(s)	53, 335
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	5 cut(s)	202, 291, 465, 479, 482
BlsI	GCNGC	5 cut(s)	203, 292, 466, 480, 483
BmcAI	AGTACT	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	410, 476
Bpu14I	TTCGAA	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	323
BseGI	GGATG	2 cut(s)	118, 467
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	213, 277, 468, 490
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	551
BslFI	GGGAC	2 cut(s)	63, 443
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	63, 443
BsnI	GGCC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	248, 537, 547, 590
BspACI	CCGC	2 cut(s)	464, 556
BspANI	GGCC	1 cut(s)	17
BspDI	ATCGAT	1 cut(s)	323
BspPI	GGATC	2 cut(s)	256, 545
BspQI	GCTCTTC	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	387
BsrBI	CCGCTC	2 cut(s)	464, 556
BssMI	GATC	4 cut(s)	248, 537, 547, 590
Bst6I	CTCTTC	2 cut(s)	62, 500
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	199, 216, 630
BstF5I	GGATG	2 cut(s)	118, 467
BstKTI	GATC	4 cut(s)	251, 540, 550, 593
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	248, 537, 547, 590
BstMCI	CGRYCG	1 cut(s)	593
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 490
BstV1I	GCAGC	4 cut(s)	213, 277, 468, 490
Bsu15I	ATCGAT	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	118, 467
Cac8I	GCNNGC	3 cut(s)	199, 216, 630
ClaI	ATCGAT	1 cut(s)	323
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	229, 532
CviAII	CATG	2 cut(s)	119, 345
CviJI	RGCY	7 cut(s)	17, 204, 209, 241, 285, 481, 628
CviKI_1	RGCY	7 cut(s)	17, 204, 209, 241, 285, 481, 628
CviQI	GTAC	2 cut(s)	229, 532
DpnI	GATC	4 cut(s)	250, 539, 549, 592
DpnII	GATC	4 cut(s)	248, 537, 547, 590
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	62, 500
EarI	CTCTTC	2 cut(s)	62, 500
Eco32I	GATATC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	2 cut(s)	122, 348
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	63, 443
FatI	CATG	2 cut(s)	118, 344
FauNDI	CATATG	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	5 cut(s)	202, 291, 465, 479, 482
FokI	GGATG	2 cut(s)	125, 454
Fsp4HI	GCNGC	5 cut(s)	202, 291, 465, 479, 482
FspBI	CTAG	2 cut(s)	53, 335
GluI	GCNGC	5 cut(s)	202, 291, 465, 479, 482
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	17
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	122, 348
HinfI	GANTC	2 cut(s)	325, 583
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	4 cut(s)	330, 412, 500, 521
Hpy188III	TCNNGA	3 cut(s)	418, 442, 551
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	3 cut(s)	84, 545, 598
HpyAV	CCTTC	3 cut(s)	78, 482, 516
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	7 cut(s)	197, 214, 293, 401, 454, 484, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 490
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	122, 348
Kzo9I	GATC	4 cut(s)	248, 537, 547, 590
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	238, 373
LpnPI	CCDG	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	213, 277, 468, 490
LweI	GCATC	2 cut(s)	410, 476
MaeI	CTAG	2 cut(s)	53, 335
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	190, 337
MalI	GATC	4 cut(s)	250, 539, 549, 592
MbiI	CCGCTC	2 cut(s)	464, 556
MboI	GATC	4 cut(s)	248, 537, 547, 590
MboII	GAAGA	2 cut(s)	79, 487
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	7 cut(s)	125, 252, 311, 389, 486, 502, 577
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	3 cut(s)	171, 499, 540
MnlI	CCTC	6 cut(s)	115, 184, 213, 229, 296, 356
Mox20I	TGGCCA	1 cut(s)	17
Mph1103I	ATGCAT	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	225, 510, 640
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	204, 481
MwoI	GCNNNNNNNGC	2 cut(s)	215, 490
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	4 cut(s)	248, 537, 547, 590
NlaIII	CATG	2 cut(s)	122, 348
NsiI	ATGCAT	1 cut(s)	456
NspV	TTCGAA	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	551
PciSI	GCTCTTC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	2 cut(s)	540, 549
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	203, 292, 466, 480, 483
Ple19I	CGATCG	1 cut(s)	593
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	204
PvuI	CGATCG	1 cut(s)	593
PvuII	CAGCTG	2 cut(s)	204, 481
RsaI	GTAC	2 cut(s)	230, 533
RsaNI	GTAC	2 cut(s)	229, 532
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	225, 510, 640
SatI	GCNGC	5 cut(s)	202, 291, 465, 479, 482
Sau3AI	GATC	4 cut(s)	248, 537, 547, 590
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	592
SetI	ASST	7 cut(s)	110, 206, 224, 243, 336, 483, 527
SfaNI	GCATC	2 cut(s)	410, 476
Sfr274I	CTCGAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	7 cut(s)	125, 252, 311, 389, 486, 502, 577
SsiI	CCGC	2 cut(s)	464, 556
SspMI	CTAG	2 cut(s)	53, 335
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	9 cut(s)	82, 323, 387, 417, 460, 540, 552, 581, 593
TasI	AATT	7 cut(s)	125, 252, 311, 389, 486, 502, 577
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	225, 510, 640
Tru9I	TTAA	3 cut(s)	225, 510, 640
TseI	GCWGC	4 cut(s)	201, 290, 478, 481
TspDTI	ATGAA	2 cut(s)	333, 438
XapI	RAATTY	3 cut(s)	389, 502, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	2 cut(s)	53, 335
ZrmI	AGTACT	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.