Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002934

Physical Location & Seq

Genomic Coordinates Reverse (-)

28767792 .. 28783142

Gene Structure 15351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3894 bp

ATGATAAAGTCTCGAGACGTCCAAGAGATTGTGGCGAAGCTCTCGTCCGATAAAGCCAAGACTCGAGAAGAAGGGATAAAGTTGCTAAATACATGGTTAGAAGGAGAAAGATCAAACGATTTCTGTAAATATCTTGCACAGAAAACTGCCAAGCTTAAACCAGCTGAAATTCCTCACTCTGAAACATGGCCTTTCTTTATTACTATGTTGATTCAATGTGCTTCATTGGAGATATCCCCAAGCAAGCGCCGATCACCGAAATTGGTATTTGCAAAGACCTTGAGGATAGTTGTGCAACGAGCGGAGGATGATAAGTTTTCAGGCAATTTATTGCCATTGTTACCTGTGGTTAAAAGTCTTTTCAACCATATTTGGGAGGTCTTAAACAATGATCCAAGCTACCAGTGGCAGTCGGAATATGGGCTTATTCTGCAGGATCTTTTGGTTGTCAGAGATTATCGATTTCACATGAGAAAGCGAATTTATTGCAGCCTAGTGCTTCTGTATATGGAAAATATGGAAAAAATCTTGAGTGGTAGAAACGATAATCAACATATTATCAAGGACGTAAATACTCTCCGTTCACTTTTGGAGAACCCCCCTGGAGATTTCCCAGAAAATCTAAGGGACGGCGTTGTTAGAGGTTTTGTTAGGATTTTCTCTTGTATCAGGGATGAGGGAAAGGTTTCTCGCAAACTTATTGAGTGTATTAATACATTCTTGTTAAAAGATGGTCCAAATTTAGGGCGTCAGTCCCTGGAGATCCACAATGCTGTGCATCAATTTGTCTTTCGGTGTTTGCTGACAACCCATGATCAAACTTTTAAGGATTGCCTTATTTTTTATGCAATGTTACAACTGAATATGACAAGAGGTGCTACTGATGGGAGCTTTTTGGTACAACATCTTTTAGACATAGTGTACAAGGAATTAGATCAAAGCTCTGTATCCAATACAATTGTGCCCAGGACTGATGCAGCTAAATATGAGAAGTTTGGAACTTTGAGCAGCTCTCATTGTGCCTTGGTTGAGCTTGCAGCTGCTGTACTTTATAGGGCTTGTATTAACTTGACAAAAGCACCATCAACTGAAAAGAGGGTCAAGAGAGAGCATGTTGCTGCCCATTTACGAGAGGCTCTCATGAAGGGGAAATGGTTATGGTATGCTTCATTTTGTTGTCTTACTCGTAAGTACTCTACACGCATTGGTAAAGATCTTTTTATGTACTGGTTCGAGGGGATATGTTCAAGCTTTCAAAGAATTTTGAACGAGGCAAATGTGGGGCATGCTTATGATGGTTTGCTATGGACACTGAGGAGCCTGCAGGAACTCTCTTCTGTGTTGTTGCTTCCGGATCCAAAGCGGAAAAAGCCATTAAGCTCCTCTCCCTTGAATGAGTTTGACTGTGGTTGGCAATTAGTATGGAGCTGCCTTATGCAGGGCTTCCCGTTGTTCAGTAATGTAACTGCAGTTGTAGATGCAGCTCTGGTGCTCCTGGGAAACATAATTTCAAGTGATCTTGTACATACATGTGTCGTACCTCAGGATGTATGGGACCTTAGGATATTCAAACAAATGCCGTCAGTGTCTTTGTTGTACTTTATATCCTGTTACTTTTCGAGGAAAGGTTCGCAAGGTGATGTTCGAGACATTTTACACCTGAGAAAAAACCTCCTGAGAGCAGTTTTGGGTCAACTCAAGGAGATGGAGAGTTCCATACATAACGAGCAGTTGGTGTTATTATTGCCTGCAGCTGTTAATGCTCTTTGTGCTGGTTGTGTTCCTTTTACACAATGCCACACTGGACTAATCCAATCTTACACTTCTCTAGATGCTACTGATGCTGTAAATAAGACAGAAAAACCTGAGCACAATTGTCTGCATGGACTATTCGACTGCACTGTGGAGGTTCTCGCTGATATTGGTCCAGGTCCGAGCGTTGAGGTTTTCCCATCCCAACACTATCCAAATCTACGGCTTCCCAGGCAATTAAGAGAACCACTACTTTCTGAGATGGAGACTCTAATTCTTGGAGCTCTAGTGGAGAAGGAGATGAGAAGGAGATCTTTGTCAGATATATTCTTTAAATGTGCTATATTGTCAAACATCATCTATGGTTCAGTCTTGACAAGGCAAAGAGAGGAAGTTTCATCATTTGTCTCAAAATTGGGTCGATACCTGTTAGAATTGCTGGATTGTGCTGTTACGGTCACCCAGGGAAATGATTGTCTAGCTCTCAGTTCTGATCTCCTATCTAATGGAGCAAGCTCTATTGTTGCTTCCTTTAGAAGTTTTGCTAATTCCCCTATCTTTAGTCGACAGCACGATCAAAATCATGTCGATGCTGAACTATATGGTGCCATAATGCAAGTGATGGAGAGGCTCTTAAAAGCAATGTCTAATGTGTATGAAGAGTATTCCAGTGGTGCAGGAGAACGTTTAACTGCATGTGATACGCTAAAACAATATTCTTTCCCTGCTGATAGCAATAAAAGTAGGATTGTGGACATGGAGTTGGATGTTAATGAGGATACCGGAGATATGGATACATTATCTGATGGTGGCAAAACTGCCAGTGGTGTATTCTCTTCTGTAGAGAAATGGAAGCTGGGCATGATATCGCTTATTTCTAATTTTTTCTCAGTTTTACACACAACTTGGGATGTCCTGTTTAAGCTCCTGTCAAAAGAGAGGGATCAAATGGTCAGGGAAAAAATTATGTTTAGTCTTTGTCAACATCCCTTCTGGTCCTCTGCTGAAAATTTCAAGGAAATGGTTGGTTTAATGACTAAAATGATTAAGATACAAGTGAGTCTTAAGCTTGATTGTGGTAAGGTATTATCTGCTATCCATGGTTTGCTGGGGACACTATCATCCTTGGACACTAACTGGAAAGATAAAGGTTTCACTGACTCTTTGGGTGAAAGGGGACCTGAGCAGAACTTGATGCATCTTCGAGATGCGGTTGCTGAATGTGATCTTCTTGACTGGTTTGGACGTGTTAAGCTCATCGATTGCATATGCAATTTTGTTTTACTCAGTCCTCAAATTGGTCAGACACTGATTGAAAGGTTGTTGACGATGCTTCAAGATCCTGATTATCGAGTTCGGTTCTCCCTGGCTAGAAGGATTGGTGTTCTTTTCCAAACGTGGGATGGACATGAGGAATTATTCAACGATATATGTTCCAACTTTGGTGTGAAGTTGGTGGTATCCTCAAAAGAAAAACTTGTTACTGCAAGTGAGGTCTTAGCTAGTGGTCCACAGCCTCAGCCCACGATGGAAACTGTCATTATTACTCTCATGCATCTTGCTTTGCAAAGTGAGAAAATAGAGTTGGAGGCTGTATTCATGATATGCGTGGTTGCTGCTATTGATCCTTGTCAGAGGGAATTGATCTTTGTAATACTTGACAATCTCTCAAGGCAGCTGCGCTATGCAAGCAGGTTTAAGTACTTGGAGGAGCTTTTAGGATCAATTCTCTTTAGTTGGGTTGCTTGTGGTGTAAGCCTTGCTGCACTTGTGGAGATACGGCAATTATTTGTGTCTGATTCCGAACCTAGTTACTTCATGCAGTATTGCTGCCATTGGCTTCTCCCAGCTCTAGTTTTGCTTGGGGATAGCTCTAGTCTCAGCTGGGTTGCTAGAATTGCTTGTCAACCTCCAGCAGTTCTGGTGAAAATCACTTCGTGCAGATCTTCTCTGTTTGTATGGGATTACATTGTAGTAAGAGATCTGGGTGGGGAAAAGGGAGCAGATGTGCTTCAGAATTCTATTTTGCATCTTGCTCAGATATCTGAGAATGAACGGGACAAACTCATCAAGAAGCATATGGTTTGCTACTTATTCTTTAGATTCATTTATCTAGGTCTGAAGTTGATTGGCAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko04064 ko04068 ko04110 ko04115 ko04210 ko04214 ko04218 ko05165 ko05166 ko05202 ko05206 map01524 map03440 map04064 map04068 map04110 map04115 map04210 map04214 map04218 map05165 map05166 map05202 map05206

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase PWWP

Protein Analysis

1297

Amino Acids

146.78

Weight (kDa)

6.77

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_ATM	PF25360	1181 - 1280	1.5e-30	ATM-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48190 AT3G48190 AT3G48190
fragaria_vesca	FvH4_2g11670
malus_domestica	MD06G1173700.v1.1
prunus_persica	Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1 Prupe.5G173600_v2.0.a1
pyrus_communis	pycom05g15080 pycom06g15490 pycom16g13670
rosa_chinensis	RchiOBHm_Chr6g0271131
rosa_laevigata	RLG00000013743
rosa_multiflora	Rmu_sc0004675.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233860 Rroxscaffold_4G00324410 Rroxscaffold_4G00324420 Rroxscaffold_5G00346090 Rroxscaffold_5G00348130 Rroxscaffold_5G00348580 Rroxscaffold_5G00348590 Rroxscaffold_5G00385810 Rroxscaffold_6G00394020 Rroxscaffold_7G00197250 Rroxscaffold_8G00436820
rosa_rugosa	Rorug06G0058900
rosa_samantha	Rh6AG178600 Rh6BG182100 Rh6CG177800 Rh6DG169700
rosa_wichuraiana	Rw6G015260 Rw6G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	3435
AccB1I	GGYRCC	1 cut(s)	2357
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	2317
AccIII	TCCGGA	1 cut(s)	1351
AciI	CCGC	3 cut(s)	302, 1363, 2963
AclI	AACGTT	1 cut(s)	2437
AclWI	GGATC	9 cut(s)	386, 444, 757, 1349, 1362, 2703, 3086, 3371, 3481
AcsI	RAATTY	6 cut(s)	168, 480, 739, 1260, 2761, 3769
AcuI	CTGAAG	2 cut(s)	3749, 3893
AcyI	GRCGYC	2 cut(s)	18, 748
AdeI	CACNNNGTG	1 cut(s)	3690
AfaI	GTAC	9 cut(s)	900, 923, 1047, 1193, 1226, 1524, 1539, 1598, 3455
AfiI	CCNNNNNNNGG	5 cut(s)	373, 743, 1438, 3050, 3151
AflII	CTTAAG	1 cut(s)	2816
AflIII	ACRYGT	2 cut(s)	1529, 2998
AjiI	CACGTC	1 cut(s)	2999
AjnI	CCWGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
AjuI	GAANNNNNNNTTGG	2 cut(s)	3320, 3352
Alw21I	GWGCWC	3 cut(s)	1494, 1872, 2038
Alw26I	GTCTC	6 cut(s)	9, 15, 1641, 2012, 2164, 3635
AlwI	GGATC	9 cut(s)	386, 444, 757, 1349, 1362, 2703, 3086, 3371, 3481
AlwNI	CAGNNNCTG	3 cut(s)	757, 1043, 3061
Ama87I	CYCGRG	2 cut(s)	12, 63
Aor13HI	TCCGGA	1 cut(s)	1351
AoxI	GGCC	1 cut(s)	188
ApoI	RAATTY	6 cut(s)	168, 480, 739, 1260, 2761, 3769
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AseI	ATTAAT	1 cut(s)	711
Asp700I	GAANNNNTTC	1 cut(s)	685
AspLEI	GCGC	2 cut(s)	249, 3435
AspS9I	GGNCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
AsuHPI	GGTGA	5 cut(s)	246, 1649, 2203, 2933, 3688
AvaI	CYCGRG	2 cut(s)	12, 63
AvaII	GGWCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
AxyI	CCTNAGG	2 cut(s)	1542, 1559
BaeGI	GKGCMC	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	1354
BanI	GGYRCC	1 cut(s)	2357
BanII	GRGCYC	1 cut(s)	2038
Bbv12I	GWGCWC	3 cut(s)	1494, 1872, 2038
BbvCI	CCTCAGC	1 cut(s)	3270
BceAI	ACGGC	4 cut(s)	646, 1564, 1991, 3548
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
BciVI	GTATCC	4 cut(s)	958, 2524, 2539, 3223
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	6 cut(s)	9, 15, 1641, 2012, 2164, 3635
BfmI	CTRYAG	5 cut(s)	431, 1322, 1467, 1749, 2592
BfoI	RGCGCY	1 cut(s)	250
BfrI	CTTAAG	1 cut(s)	2816
BfuAI	ACCTGC	1 cut(s)	3435
BfuI	GTATCC	4 cut(s)	958, 2524, 2539, 3223
BglII	AGATCT	4 cut(s)	1213, 2063, 3695, 3733
BmcAI	AGTACT	2 cut(s)	1193, 3455
Bme1390I	CCNGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
Bme18I	GGWCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
BmeT110I	CYCGRG	2 cut(s)	12, 63
BmgBI	CACGTC	1 cut(s)	2999
BmgT120I	GGNCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
BmiI	GGNNCC	5 cut(s)	1319, 1356, 1556, 2359, 2931
BmrFI	CCNGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
BplI	GAGNNNNNCTC	4 cut(s)	997, 1029, 1122, 1154
BpmI	CTGGAG	3 cut(s)	624, 779, 3648
Bpu10I	CCTNAGC	3 cut(s)	1866, 2934, 3270
BpuEI	CTTGAG	4 cut(s)	301, 550, 1682, 3406
Bsa29I	ATCGAT	2 cut(s)	460, 3012
BsaBI	GATNNNNATC	1 cut(s)	2331
BsaHI	GRCGYC	2 cut(s)	18, 748
BsaWI	WCCGGW	2 cut(s)	1351, 2534
BsaXI	ACNNNNNCTCC	4 cut(s)	2025, 2055, 3744, 3774
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 743, 1438, 3050, 3151
Bse1I	ACTGG	7 cut(s)	403, 1232, 1807, 2421, 2574, 2894, 2993
Bse21I	CCTNAGG	2 cut(s)	1542, 1559
Bse3DI	GCAATG	2 cut(s)	855, 2400
Bse8I	GATNNNNATC	1 cut(s)	2331
BseAI	TCCGGA	1 cut(s)	1351
BseBI	CCWGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
BseCI	ATCGAT	2 cut(s)	460, 3012
BseGI	GGATG	9 cut(s)	313, 679, 1552, 1952, 2524, 2668, 2737, 2873, 3160
BseJI	GATNNNNATC	1 cut(s)	2331
BseLI	CCNNNNNNNGG	5 cut(s)	373, 743, 1438, 3050, 3151
BseMI	GCAATG	2 cut(s)	855, 2400
BseNI	ACTGG	7 cut(s)	403, 1232, 1807, 2421, 2574, 2894, 2993
BseRI	GAGGAG	3 cut(s)	1330, 1372, 3476
BseSI	GKGCMC	1 cut(s)	966
BseYI	CCCAGC	4 cut(s)	2608, 2860, 3598, 3636
BsgI	GTGCAG	4 cut(s)	1882, 2448, 3501, 3712
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	2357
BshVI	ATCGAT	2 cut(s)	460, 3012
BsiHKAI	GWGCWC	3 cut(s)	1494, 1872, 2038
BsiHKCI	CYCGRG	2 cut(s)	12, 63
BsiSI	CCGG	2 cut(s)	1352, 2535
BslFI	GGGAC	6 cut(s)	641, 739, 1568, 2878, 2943, 3824
BslI	CCNNNNNNNGG	5 cut(s)	373, 743, 1438, 3050, 3151
BsmAI	GTCTC	6 cut(s)	9, 15, 1641, 2012, 2164, 3635
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	6 cut(s)	641, 739, 1568, 2878, 2943, 3824
BsnI	GGCC	1 cut(s)	190
BsoBI	CYCGRG	2 cut(s)	12, 63
Bsp1286I	GDGCHC	4 cut(s)	966, 1494, 1872, 2038
Bsp13I	TCCGGA	1 cut(s)	1351
Bsp1407I	TGTACA	2 cut(s)	921, 1522
Bsp19I	CCATGG	1 cut(s)	2851
BspACI	CCGC	3 cut(s)	302, 1363, 2963
BspANI	GGCC	1 cut(s)	190
BspDI	ATCGAT	2 cut(s)	460, 3012
BspEI	TCCGGA	1 cut(s)	1351
BspHI	TCATGA	3 cut(s)	1140, 3351, 3890
BspLI	GGNNCC	5 cut(s)	1319, 1356, 1556, 2359, 2931
BspMAI	CTGCAG	4 cut(s)	435, 1326, 1471, 1753
BspMI	ACCTGC	1 cut(s)	3435
BspPI	GGATC	9 cut(s)	386, 444, 757, 1349, 1362, 2703, 3086, 3371, 3481
BspT107I	GGYRCC	1 cut(s)	2357
BspTI	CTTAAG	1 cut(s)	2816
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	855, 2400
BsrGI	TGTACA	2 cut(s)	921, 1522
BsrI	ACTGG	7 cut(s)	403, 1232, 1807, 2421, 2574, 2894, 2993
BssNI	GRCGYC	2 cut(s)	18, 748
BssT1I	CCWWGG	3 cut(s)	1023, 2851, 2877
Bst2UI	CCWGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
Bst4CI	ACNGT	4 cut(s)	1406, 1903, 2209, 3289
Bst6I	CTCTTC	3 cut(s)	1339, 2406, 2593
BstACI	GRCGYC	2 cut(s)	18, 748
BstAFI	CTTAAG	1 cut(s)	2816
BstAUI	TGTACA	2 cut(s)	921, 1522
BstC8I	GCNNGC	7 cut(s)	245, 1035, 1287, 1322, 1749, 2266, 3442
BstDSI	CCRYGG	1 cut(s)	2851
BstEII	GGTNACC	1 cut(s)	2209
BstENI	CCTNNNNNAGG	1 cut(s)	1436
BstF5I	GGATG	9 cut(s)	313, 679, 1552, 1952, 2524, 2668, 2737, 2873, 3160
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 3435
BstMAI	GTCTC	6 cut(s)	9, 15, 1641, 2012, 2164, 3635
BstMWI	GCNNNNNNNGC	8 cut(s)	430, 1369, 1760, 1769, 1841, 1984, 3441, 3650
BstNI	CCWGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
BstNSI	RCATGY	4 cut(s)	1115, 1289, 1533, 2451
BstPI	GGTNACC	1 cut(s)	2209
BstSCI	CCNGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
BstSFI	CTRYAG	5 cut(s)	431, 1322, 1467, 1749, 2592
BstSLI	GKGCMC	1 cut(s)	966
BstX2I	RGATCY	8 cut(s)	436, 762, 1213, 1354, 2063, 3091, 3695, 3733
BstYI	RGATCY	8 cut(s)	436, 762, 1213, 1354, 2063, 3091, 3695, 3733
Bsu15I	ATCGAT	2 cut(s)	460, 3012
Bsu36I	CCTNAGG	2 cut(s)	1542, 1559
BsuI	GTATCC	4 cut(s)	958, 2524, 2539, 3223
BsuRI	GGCC	1 cut(s)	190
BsuTUI	ATCGAT	2 cut(s)	460, 3012
BtgI	CCRYGG	1 cut(s)	2851
BtrI	CACGTC	1 cut(s)	2999
BtsCI	GGATG	9 cut(s)	313, 679, 1552, 1952, 2524, 2668, 2737, 2873, 3160
BtsIMutI	CAGTG	9 cut(s)	410, 1310, 1590, 1800, 1899, 2428, 2581, 2907, 3059
BveI	ACCTGC	1 cut(s)	3435
Cac8I	GCNNGC	7 cut(s)	245, 1035, 1287, 1322, 1749, 2266, 3442
CaiI	CAGNNNCTG	3 cut(s)	757, 1043, 3061
CciI	TCATGA	3 cut(s)	1140, 3351, 3890
CfoI	GCGC	2 cut(s)	249, 3435
Cfr13I	GGNCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
ClaI	ATCGAT	2 cut(s)	460, 3012
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	9 cut(s)	899, 922, 1046, 1192, 1225, 1523, 1538, 1597, 3454
CviQI	GTAC	9 cut(s)	899, 922, 1046, 1192, 1225, 1523, 1538, 1597, 3454
DraI	TTTAAA	1 cut(s)	2086
DraIII	CACNNNGTG	1 cut(s)	3690
Eam1104I	CTCTTC	3 cut(s)	1339, 2406, 2593
EarI	CTCTTC	3 cut(s)	1339, 2406, 2593
Ecl136II	GAGCTC	1 cut(s)	2036
Eco130I	CCWWGG	3 cut(s)	1023, 2851, 2877
Eco24I	GRGCYC	1 cut(s)	2038
Eco32I	GATATC	3 cut(s)	234, 2619, 3795
Eco47I	GGWCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
Eco53kI	GAGCTC	1 cut(s)	2036
Eco57I	CTGAAG	2 cut(s)	3749, 3893
Eco81I	CCTNAGG	2 cut(s)	1542, 1559
Eco88I	CYCGRG	2 cut(s)	12, 63
Eco91I	GGTNACC	1 cut(s)	2209
EcoICRI	GAGCTC	1 cut(s)	2036
EcoNI	CCTNNNNNAGG	1 cut(s)	1436
EcoO109I	RGGNCCY	2 cut(s)	1555, 2930
EcoO65I	GGTNACC	1 cut(s)	2209
EcoRI	GAATTC	1 cut(s)	3769
EcoRII	CCWGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
EcoRV	GATATC	3 cut(s)	234, 2619, 3795
EcoT14I	CCWWGG	3 cut(s)	1023, 2851, 2877
EcoT22I	ATGCAT	2 cut(s)	2952, 3309
EcoT38I	GRGCYC	1 cut(s)	2038
ErhI	CCWWGG	3 cut(s)	1023, 2851, 2877
Esp3I	CGTCTC	1 cut(s)	9
FalI	AAGNNNNNCTT	6 cut(s)	2050, 2082, 2799, 2831, 3213, 3245
FaqI	GGGAC	6 cut(s)	641, 739, 1568, 2878, 2943, 3824
FauNDI	CATATG	2 cut(s)	3020, 3831
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	2317
FokI	GGATG	9 cut(s)	320, 686, 1559, 1939, 2531, 2675, 2724, 2860, 3167
FriOI	GRGCYC	1 cut(s)	2038
GlaI	GCGC	2 cut(s)	248, 3434
GsaI	CCCAGC	4 cut(s)	2612, 2864, 3602, 3640
GsuI	CTGGAG	3 cut(s)	624, 779, 3648
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	1352, 2535
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	2 cut(s)	249, 3435
Hin1I	GRCGYC	2 cut(s)	18, 748
Hin6I	GCGC	2 cut(s)	247, 3433
HinP1I	GCGC	2 cut(s)	247, 3433
HincII	GTYRAC	5 cut(s)	1694, 2318, 2735, 3078, 3659
HindII	GTYRAC	5 cut(s)	1694, 2318, 2735, 3078, 3659
HindIII	AAGCTT	3 cut(s)	152, 1249, 2819
HinfI	GANTC	7 cut(s)	61, 211, 2020, 2812, 2912, 3551, 3855
HpaII	CCGG	2 cut(s)	1352, 2535
HphI	GGTGA	5 cut(s)	246, 1649, 2203, 2933, 3688
Hpy166II	GTNNAC	9 cut(s)	584, 922, 1694, 2318, 2506, 2735, 3078, 3263, 3659
Hpy8I	GTNNAC	9 cut(s)	584, 922, 1694, 2318, 2506, 2735, 3078, 3263, 3659
HpyAV	CCTTC	7 cut(s)	65, 95, 1138, 2041, 2052, 2752, 3120
HpyCH4III	ACNGT	4 cut(s)	1406, 1903, 2209, 3289
HpyCH4IV	ACGT	5 cut(s)	18, 567, 2437, 2998, 3149
HpyF10VI	GCNNNNNNNGC	8 cut(s)	430, 1369, 1760, 1769, 1841, 1984, 3441, 3650
HpySE526I	ACGT	5 cut(s)	18, 567, 2437, 2998, 3149
Hsp92I	GRCGYC	2 cut(s)	18, 748
HspAI	GCGC	2 cut(s)	247, 3433
Kpn2I	TCCGGA	1 cut(s)	1351
Ksp22I	TGATCA	1 cut(s)	814
MaeII	ACGT	5 cut(s)	18, 567, 2437, 2998, 3149
MaeIII	GTNAC	8 cut(s)	339, 852, 1462, 1610, 2203, 2209, 3232, 3563
MbiI	CCGCTC	1 cut(s)	302
MboII	GAAGA	7 cut(s)	80, 1326, 2423, 2580, 2945, 2972, 3690
MfeI	CAATTG	2 cut(s)	957, 1873
MflI	RGATCY	8 cut(s)	436, 762, 1213, 1354, 2063, 3091, 3695, 3733
MhlI	GDGCHC	4 cut(s)	966, 1494, 1872, 2038
MlyI	GAGTC	4 cut(s)	55, 2014, 2821, 2906
MmeI	TCCRAC	4 cut(s)	393, 2496, 3213, 3318
Mph1103I	ATGCAT	2 cut(s)	2952, 3309
MroI	TCCGGA	1 cut(s)	1351
MroXI	GAANNNNTTC	1 cut(s)	685
MslI	CAYNNNNRTG	3 cut(s)	1290, 1530, 2340
MspA1I	CMGCKG	5 cut(s)	164, 1040, 1754, 3430, 3636
MspCI	CTTAAG	1 cut(s)	2816
MspI	CCGG	2 cut(s)	1352, 2535
MspR9I	CCNGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
MunI	CAATTG	2 cut(s)	957, 1873
MvaI	CCWGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
MwoI	GCNNNNNNNGC	8 cut(s)	430, 1369, 1760, 1769, 1841, 1984, 3441, 3650
NcoI	CCATGG	1 cut(s)	2851
NdeI	CATATG	2 cut(s)	3020, 3831
NlaIV	GGNNCC	5 cut(s)	1319, 1356, 1556, 2359, 2931
NmuCI	GTSAC	1 cut(s)	2209
NsiI	ATGCAT	2 cut(s)	2952, 3309
NspI	RCATGY	4 cut(s)	1115, 1289, 1533, 2451
PaeI	GCATGC	1 cut(s)	1289
PaeR7I	CTCGAG	2 cut(s)	12, 63
PagI	TCATGA	3 cut(s)	1140, 3351, 3890
PasI	CCCWGGG	1 cut(s)	2215
PciI	ACATGT	1 cut(s)	1529
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	211, 3551, 3855
PleI	GAGTC	4 cut(s)	55, 2014, 2820, 2906
PpsI	GAGTC	4 cut(s)	55, 2014, 2820, 2906
PpuMI	RGGWCCY	2 cut(s)	1555, 2930
PscI	ACATGT	1 cut(s)	1529
PshBI	ATTAAT	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	2038
Psp1406I	AACGTT	1 cut(s)	2437
Psp5II	RGGWCCY	2 cut(s)	1555, 2930
Psp6I	CCWGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
PspEI	GGTNACC	1 cut(s)	2209
PspFI	CCCAGC	4 cut(s)	2608, 2860, 3598, 3636
PspGI	CCWGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
PspN4I	GGNNCC	5 cut(s)	1319, 1356, 1556, 2359, 2931
PspPI	GGNCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
PspPPI	RGGWCCY	2 cut(s)	1555, 2930
PstI	CTGCAG	4 cut(s)	435, 1326, 1471, 1753
PstNI	CAGNNNCTG	3 cut(s)	757, 1043, 3061
PsuI	RGATCY	8 cut(s)	436, 762, 1213, 1354, 2063, 3091, 3695, 3733
PvuII	CAGCTG	5 cut(s)	164, 1040, 1754, 3430, 3636
RsaI	GTAC	9 cut(s)	900, 923, 1047, 1193, 1226, 1524, 1539, 1598, 3455
RsaNI	GTAC	9 cut(s)	899, 922, 1046, 1192, 1225, 1523, 1538, 1597, 3454
RseI	CAYNNNNRTG	3 cut(s)	1290, 1530, 2340
SacI	GAGCTC	1 cut(s)	2038
SalI	GTCGAC	1 cut(s)	2316
Sau96I	GGNCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
SbfI	CCTGCAGG	1 cut(s)	1326
ScaI	AGTACT	2 cut(s)	1193, 3455
SchI	GAGTC	4 cut(s)	55, 2014, 2821, 2906
ScrFI	CCNGG	8 cut(s)	603, 758, 967, 1496, 1929, 1984, 2216, 3119
SdaI	CCTGCAGG	1 cut(s)	1326
SduI	GDGCHC	4 cut(s)	966, 1494, 1872, 2038
SfcI	CTRYAG	5 cut(s)	431, 1322, 1467, 1749, 2592
Sfr274I	CTCGAG	2 cut(s)	12, 63
SinI	GGWCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
SlaI	CTCGAG	2 cut(s)	12, 63
SmiMI	CAYNNNNRTG	3 cut(s)	1290, 1530, 2340
SmlI	CTYRAG	7 cut(s)	12, 63, 280, 529, 1697, 2816, 3421
SmoI	CTYRAG	7 cut(s)	12, 63, 280, 529, 1697, 2816, 3421
SphI	GCATGC	1 cut(s)	1289
Sse8387I	CCTGCAGG	1 cut(s)	1326
SsiI	CCGC	3 cut(s)	302, 1363, 2963
SspI	AATATT	1 cut(s)	2468
SstI	GAGCTC	1 cut(s)	2038
StyD4I	CCNGG	8 cut(s)	601, 756, 965, 1494, 1927, 1982, 2214, 3117
StyI	CCWWGG	3 cut(s)	1023, 2851, 2877
TaaI	ACNGT	4 cut(s)	1406, 1903, 2209, 3289
TaiI	ACGT	5 cut(s)	21, 570, 2440, 3001, 3152
TatI	WGTACW	7 cut(s)	921, 1045, 1191, 1224, 1522, 1596, 3453
TfiI	GAWTC	3 cut(s)	211, 3551, 3855
TscAI	CASTG	9 cut(s)	410, 1317, 1590, 1807, 1906, 2428, 2581, 2914, 3066
TseFI	GTSAC	1 cut(s)	2209
Tsp45I	GTSAC	1 cut(s)	2209
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	9 cut(s)	410, 1317, 1590, 1807, 1906, 2428, 2581, 2914, 3066
Vha464I	CTTAAG	1 cut(s)	2816
VpaK11BI	GGWCC	7 cut(s)	734, 1555, 1925, 1931, 2748, 2930, 3260
VspI	ATTAAT	1 cut(s)	711
XagI	CCTNNNNNAGG	1 cut(s)	1436
XapI	RAATTY	6 cut(s)	168, 480, 739, 1260, 2761, 3769
XbaI	TCTAGA	1 cut(s)	1828
XceI	RCATGY	4 cut(s)	1115, 1289, 1533, 2451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	402, 3152
XhoI	CTCGAG	2 cut(s)	12, 63
XmiI	GTMKAC	1 cut(s)	2317
XmnI	GAANNNNTTC	1 cut(s)	685
ZraI	GACGTC	1 cut(s)	19
ZrmI	AGTACT	2 cut(s)	1193, 3455
Zsp2I	ATGCAT	2 cut(s)	2952, 3309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.