Rroxscaffold_7G00201740

Subtilase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009735
Physical Location & Seq
Reverse (-)
49507315 .. 49510159
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201740.1

Sequence Viewer

Length: 654 bp
ATGGCTCCTCCTCCAGGGATTGTTGTCACCCTTTTGCTTCTTCTTGCCCTGCAGAGTTATGGGTTTGTTCTTTCTTTTGCTTCCACAAATGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCATGAGGTTCTGTCATATGTATTTGGAAGCAAAGAAGCCACAAGGGAATCAATTATGTACAGCTACAAACATGGATTTTCGGGGTTTGCTGCAGTTCTAACTCCATCTCAAGCCAAGCATATTGCAGATGTACCTGGTGTTGTTCGTGTCATTCCTCACAGAGTTAATCAGGAATTTGGCCCAAGTCTGAAAGCTTTAGAGATGAGGGTATGGGAAACATTCCATCTCGTTGGAGAGGCATATGTCAAGGAGGAGAAAAGTTCCATCACTCTCATTGCAATAGGACATGGTACTCATACATCATCCACTGCAGCCGGTGGTTTTATAGAAAATGCAAGTTTTATGGGACTTGCTTTAGGATTGGCAAGAGGAGGTGCTCCATCATCTTGGTTAGCTATTTACAAAGTTTGTTGGGCTACTGGTGGCTGCAGCACAGTAGACCTACTTGCTGCATTTGATGATGCAATTTTTGATGGTGTGGAGTGCTTTCGGTATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

217

Amino Acids

23.44

Weight (kDa)

6.04

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 31 - 104 4e-17 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 591
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 3 cut(s) 212, 285, 445
AfiI CCNNNNNNNGG 2 cut(s) 14, 136
AjnI CCWGG 2 cut(s) 13, 286
AluBI AGCT 4 cut(s) 136, 216, 347, 548
AluI AGCT 4 cut(s) 136, 216, 347, 548
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 5 cut(s) 242, 464, 579, 582, 602
ApoI RAATTY 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 19, 143
AvaI CYCGRG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 5 cut(s) 229, 476, 566, 589, 594
BccI CCATC 5 cut(s) 265, 384, 425, 541, 620
BciT130I CCWGG 2 cut(s) 15, 288
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 652
BfmI CTRYAG 4 cut(s) 50, 243, 462, 580
BisI GCNGC 5 cut(s) 243, 465, 580, 583, 603
BlsI GCNGC 5 cut(s) 244, 466, 581, 584, 604
Bme1390I CCNGG 2 cut(s) 15, 288
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 15, 288
BmsI GCATC 2 cut(s) 149, 604
BpuEI CTTGAG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 136
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 15, 288
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 14, 136
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 2 cut(s) 419, 537
BseXI GCAGC 5 cut(s) 229, 476, 566, 589, 594
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 532
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 14, 136
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 532
Bsp1407I TGTACA 1 cut(s) 210
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 4 cut(s) 54, 247, 466, 584
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 210
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 14
Bst2UI CCWGG 2 cut(s) 15, 288
Bst4CI ACNGT 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 455
BstMAI GTCTC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 15, 288
BstSCI CCNGG 2 cut(s) 13, 286
BstSFI CTRYAG 4 cut(s) 50, 243, 462, 580
BstV1I GCAGC 5 cut(s) 229, 476, 566, 589, 594
BstXI CCANNNNNNTGG 2 cut(s) 383, 540
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 455
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 332
CsiI ACCWGGT 1 cut(s) 286
Csp6I GTAC 3 cut(s) 211, 284, 444
CviAII CATG 3 cut(s) 155, 224, 440
CviQI GTAC 3 cut(s) 211, 284, 444
DdeI CTNAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 13, 286
FaeI CATG 3 cut(s) 158, 227, 443
FaqI GGGAC 1 cut(s) 513
FatI CATG 3 cut(s) 154, 223, 439
FauNDI CATATG 2 cut(s) 169, 394
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 5 cut(s) 243, 465, 580, 583, 603
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 5 cut(s) 243, 465, 580, 583, 603
FspBI CTAG 1 cut(s) 652
GluI GCNGC 5 cut(s) 243, 465, 580, 583, 603
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 468
Hin1II CATG 3 cut(s) 158, 227, 443
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 146, 200
HpaII CCGG 1 cut(s) 468
HphI GGTGA 2 cut(s) 19, 143
Hpy166II GTNNAC 2 cut(s) 94, 592
Hpy188I TCNGA 2 cut(s) 145, 342
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 2 cut(s) 94, 592
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 9 cut(s) 52, 245, 278, 431, 464, 488, 582, 605, 617
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 158, 227, 443
LmnI GCTCC 2 cut(s) 10, 535
LpnPI CCDG 8 cut(s) 27, 62, 122, 273, 300, 308, 481, 558
Lsp1109I GCAGC 5 cut(s) 229, 476, 566, 589, 594
LweI GCATC 2 cut(s) 149, 604
MabI ACCWGGT 1 cut(s) 286
MaeI CTAG 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 3 cut(s) 204, 326, 618
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 9 cut(s) 18, 21, 151, 318, 351, 382, 397, 515, 518
MseI TTAA 1 cut(s) 318
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 15, 288
MvaI CCWGG 2 cut(s) 15, 288
NdeI CATATG 2 cut(s) 169, 394
NlaIII CATG 3 cut(s) 158, 227, 443
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 5 cut(s) 244, 466, 581, 584, 604
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 13, 286
PspGI CCWGG 2 cut(s) 13, 286
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 4 cut(s) 54, 247, 466, 584
RsaI GTAC 3 cut(s) 212, 285, 445
RsaNI GTAC 3 cut(s) 211, 284, 444
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 5 cut(s) 243, 465, 580, 583, 603
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 15, 288
SduI GDGCHC 1 cut(s) 532
SetI ASST 8 cut(s) 138, 162, 218, 289, 349, 529, 550, 597
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 2 cut(s) 149, 604
SfcI CTRYAG 4 cut(s) 50, 243, 462, 580
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 3 cut(s) 204, 326, 618
SspMI CTAG 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 13, 286
TaaI ACNGT 1 cut(s) 589
TasI AATT 3 cut(s) 204, 326, 618
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 5 cut(s) 242, 464, 579, 582, 602
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 1 cut(s) 466
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.