Rw2G019660

Subtilase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009735
Physical Location & Seq
Forward (+)
26324847 .. 26325447
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019660.1

Sequence Viewer

Length: 345 bp
ATGGCTCCTCCTCCAGGGATTGTTGTCACCCTTTTGCTTCTTCTTGCTCTGCACAGTTATGGGTTCGTTCTTTCTTTTGCTTCCACAAATGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCATGAGATTCTGTCATATGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGTTGGTTTCTTGTCAAACCAGCAAAGAGCAATTGTTGCCTTAGCAAGTGCAAGGTACTATCTATAAAATTTCATTGTAGTTATCCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

9.33

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 14, 136
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 19, 143
AvaI CYCGRG 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 136
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 14, 136
BseMII CTCAG 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 14, 136
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 131
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 138, 225
BstDEI CTNAG 2 cut(s) 144, 293
BstENI CCTNNNNNAGG 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 138, 225
CaiI CAGNNNCTG 1 cut(s) 233
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 5, 136, 196
CviKI_1 RGCY 3 cut(s) 5, 136, 196
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 144, 293
Eco147I AGGCCT 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 158
FatI CATG 1 cut(s) 154
FauNDI CATATG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 1 cut(s) 158
HinfI GANTC 2 cut(s) 146, 160
HphI GGTGA 2 cut(s) 19, 143
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 145, 218
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 52, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 144, 293
Hsp92II CATG 1 cut(s) 158
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 27, 122, 213, 219, 285
LweI GCATC 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 283
MluCI AATT 2 cut(s) 283, 320
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 18, 21, 202
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeI CATATG 1 cut(s) 169
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 196
PfeI GAWTC 1 cut(s) 160
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 57
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 15
SetI ASST 3 cut(s) 138, 213, 309
SfaNI GCATC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 2 cut(s) 283, 320
SseBI AGGCCT 1 cut(s) 196
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 56
TasI AATT 2 cut(s) 283, 320
TfiI GAWTC 1 cut(s) 160
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 314
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.