Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009735

Physical Location & Seq

Genomic Coordinates Forward (+)

61471699 .. 61479328

Gene Structure 7630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG392600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCATGAGATTCTGTCATATGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGTTGGTTTCTTGTCAAACCAGCAAAGAGCAATTGTTGCCTTCGCAAGTGCAAGCCCAAAGGGCAGCCCCAAAGAGAGGAAGCCAAGCTCAAGGCCCAGCAAGACCTGGTTGACCCAAACCCAGACCACCAATCCACCACGCCAGCAGTGGCCTATGCAGCGCCGCCCTCGAGTCCTGCCATGAACCAGCCACGCCACGAGCCAACCCCGCCAGGAACCAGCCTCGACACAATCCCCGCTATGAACCAACCCCACCACGAGCCGCACCGTCAAGCTTCGTCAGAAGCCAGCACCTCCTCGAGCCCCAAGCCACTGCAGATACAGCACCCAGCTCCAATCGCTACAAGCCACACTGTCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.41

Weight (kDa)

9.07

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009735)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119511 RchiOBHm_Chr2g0172521
rosa_laevigata	RLG00000006531 RLG00000012244 RLG00000014102 RLG00000035857
rosa_roxburghii	Rroxscaffold_4G00308930 Rroxscaffold_5G00335740 Rroxscaffold_7G00201740
rosa_rugosa	Rorug01G0350400 Rorug03G0199800
rosa_samantha	Rh3BG301900 Rh3BG366400 Rh5BG223900 Rh5DG392600 Rh6DG139300 Rh7BG294400
rosa_wichuraiana	Rw1G016640 Rw2G019660 Rw2G030710 Rw4G018010 Rw6G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	311, 356, 384, 410
AfiI	CCNNNNNNNGG	2 cut(s)	31, 223
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	2 cut(s)	252, 358
AluBI	AGCT	4 cut(s)	31, 235, 422, 479
AluI	AGCT	4 cut(s)	31, 235, 422, 479
Alw26I	GTCTC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	128
Ama87I	CYCGRG	3 cut(s)	26, 316, 445
AoxI	GGCC	3 cut(s)	89, 240, 297
ApeKI	GCWGC	2 cut(s)	211, 305
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	3 cut(s)	26, 316, 445
BanII	GRGCYC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	2 cut(s)	124, 156
BauI	CACGAG	2 cut(s)	344, 404
BbvI	GCAGC	2 cut(s)	223, 317
BciT130I	CCWGG	2 cut(s)	254, 360
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	4 cut(s)	212, 306, 311, 410
BlsI	GCNGC	4 cut(s)	213, 307, 312, 411
Bme1390I	CCNGG	2 cut(s)	254, 360
BmeT110I	CYCGRG	3 cut(s)	26, 316, 445
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	254, 360
BmsI	GCATC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 223
BseBI	CCWGG	2 cut(s)	254, 360
BseLI	CCNNNNNNNGG	2 cut(s)	31, 223
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	223, 317
BseYI	CCCAGC	2 cut(s)	243, 475
BshFI	GGCC	3 cut(s)	91, 242, 299
BsiHKCI	CYCGRG	3 cut(s)	26, 316, 445
BslI	CCNNNNNNNGG	2 cut(s)	31, 223
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	91, 242, 299
BsoBI	CYCGRG	3 cut(s)	26, 316, 445
Bsp1286I	GDGCHC	1 cut(s)	452
BspACI	CCGC	4 cut(s)	311, 356, 384, 410
BspANI	GGCC	3 cut(s)	91, 242, 299
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	465
BssSI	CACGAG	2 cut(s)	344, 404
Bst2BI	CACGAG	2 cut(s)	344, 404
Bst2UI	CCWGG	2 cut(s)	254, 360
Bst4CI	ACNGT	2 cut(s)	416, 502
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	5 cut(s)	33, 120, 200, 291, 436
BstDEI	CTNAG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 208, 305, 355, 469, 485
BstNI	CCWGG	2 cut(s)	254, 360
BstSCI	CCNGG	2 cut(s)	252, 358
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	223, 317
BsuRI	GGCC	3 cut(s)	91, 242, 299
BtsI	GCAGTG	2 cut(s)	300, 458
BtsIMutI	CAGTG	3 cut(s)	300, 458, 498
Cac8I	GCNNGC	5 cut(s)	33, 120, 200, 291, 436
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	252
CviAII	CATG	2 cut(s)	50, 328
DdeI	CTNAG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	452
Eco88I	CYCGRG	3 cut(s)	26, 316, 445
EcoRII	CCWGG	2 cut(s)	252, 358
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	2 cut(s)	53, 331
FaiI	YATR	7 cut(s)	18, 51, 64, 66, 303, 329, 389
FatI	CATG	2 cut(s)	49, 327
FauI	CCCGC	2 cut(s)	363, 391
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	212, 306, 311, 410
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	4 cut(s)	212, 306, 311, 410
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	212, 306, 311, 410
GsaI	CCCAGC	2 cut(s)	247, 479
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	91, 242, 299
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	53, 331
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	41, 55, 319
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	40, 113, 430
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	126, 197
HpyCH4III	ACNGT	2 cut(s)	416, 502
HpyCH4V	TGCA	3 cut(s)	198, 305, 463
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 208, 305, 355, 469, 485
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	53, 331
HspAI	GCGC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	2 cut(s)	223, 317
LweI	GCATC	1 cut(s)	44
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	508
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	50, 328
MnlI	CCTC	6 cut(s)	97, 217, 325, 380, 451, 454
MspR9I	CCNGG	2 cut(s)	254, 360
MunI	CAATTG	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	254, 360
MwoI	GCNNNNNNNGC	6 cut(s)	183, 208, 305, 355, 469, 485
NdeI	CATATG	1 cut(s)	64
NlaIII	CATG	2 cut(s)	53, 331
NlaIV	GGNNCC	1 cut(s)	364
PaeR7I	CTCGAG	2 cut(s)	316, 445
PceI	AGGCCT	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	213, 307, 312, 411
PleI	GAGTC	2 cut(s)	49, 327
PpsI	GAGTC	2 cut(s)	49, 327
Psp6I	CCWGG	2 cut(s)	252, 358
PspFI	CCCAGC	2 cut(s)	243, 475
PspGI	CCWGG	2 cut(s)	252, 358
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	241
PspXI	VCTCGAGB	2 cut(s)	316, 445
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	128
SatI	GCNGC	4 cut(s)	212, 306, 311, 410
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	50, 328
ScrFI	CCNGG	2 cut(s)	254, 360
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	7 cut(s)	33, 108, 237, 255, 424, 443, 481
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	461
Sfr274I	CTCGAG	2 cut(s)	316, 445
SlaI	CTCGAG	2 cut(s)	316, 445
SmlI	CTYRAG	3 cut(s)	236, 316, 445
SmoI	CTYRAG	3 cut(s)	236, 316, 445
Sse9I	AATT	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	4 cut(s)	311, 356, 384, 410
SspMI	CTAG	1 cut(s)	508
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	252, 358
TaaI	ACNGT	2 cut(s)	416, 502
TaqI	TCGA	3 cut(s)	317, 372, 446
TasI	AATT	1 cut(s)	178
TauI	GCSGC	2 cut(s)	313, 412
TfiI	GAWTC	1 cut(s)	55
TscAI	CASTG	3 cut(s)	300, 465, 505
TseI	GCWGC	2 cut(s)	211, 305
TspDTI	ATGAA	2 cut(s)	344, 404
TspRI	CASTG	3 cut(s)	300, 465, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XhoI	CTCGAG	2 cut(s)	316, 445
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.