Rw1G016640

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009735
Physical Location & Seq
Forward (+)
36970886 .. 36977138
6253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016640.1

Sequence Viewer

Length: 879 bp
ATGGAAATAAGTAAACAGTATAGCAAGGATTATTTAATCATCAGTTTTCAAGTAGTCGAATTAAAAATACAAAGCAGAAAGAAGATAAGAACTTGCAATAGAGCACAAACTTCTATTCAGTATGGACAACCTGAGGAATCAGAGGAGAGCACAAGAATGAACAATATTTTTGTTCAGTTGTCTCCCTTTGGTCTAGTCTCATGTTTCCTCAACTCCTTTGTCTTAGATGTCACTGAAATTCTGTCTGATCTTGAGCTTTCGATTCAAAGGGTGAAAGTGACAACAACACCATATGACAGGGTCTTGGACCTGTTCTTCATAACAGATAACATGGATCTTCTGCACACAAAGGAGCGGCAAGATAAGACATTGAAACAGTTGCAAGCCGTATTGGGTAAGTCGTGTACCAGTTGCGAACTTCAGTTGGTAGGTCCTGAGTATGATCCCCACCATGGCATTCCTTCTCTGTCTCCATTAGTAGCTGAAGAGCTATTTAGGTGTGAGCTGTTGGATAAAGAAATCCGTTCTCAAGCTCTTAGTCCTGATATGACGAAATTGAAGAACGCTAATGTAACAATAGGCAACTCATTGAGCCCAGCACATACATTACTTCAGATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAACTTTGAAAGACAGCAACATCAAGACAATGGGATTTGCAAGTACATATTGTCTGATCAAGCCTTCAGACAACAGCAAGCATATAAGCCCCTGTTGTCTGGCACATCCTTCAGACAATAGTAAGTATATAAGTTGCTGTTGTTCTTCGTGGTATTCAGACAACAGACATGATAGTAGCTGCTGTTGTACTAAACTTTATCAGACAACAGCAAGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

292

Amino Acids

33.02

Weight (kDa)

6.5

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT_ACR9_3rd PF24931 190 - 229 2.8e-17 ACR9-like, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 355
AciI CCGC 1 cut(s) 355
AclWI GGATC 3 cut(s) 342, 437, 610
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 5 cut(s) 404, 504, 596, 708, 753
AfaI GTAC 3 cut(s) 406, 703, 847
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 5 cut(s) 50, 266, 373, 559, 667
AluBI AGCT 6 cut(s) 256, 482, 490, 505, 533, 837
AluI AGCT 6 cut(s) 256, 482, 490, 505, 533, 837
Alw21I GWGCWC 2 cut(s) 106, 152
Alw26I GTCTC 4 cut(s) 186, 202, 474, 644
AlwI GGATC 3 cut(s) 342, 437, 610
ApeKI GCWGC 1 cut(s) 837
ApoI RAATTY 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 307, 431
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 2 cut(s) 307, 431
AxyI CCTNAGG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 596
Bbv12I GWGCWC 2 cut(s) 106, 152
BbvI GCAGC 1 cut(s) 824
BceAI ACGGC 1 cut(s) 371
BclI TGATCA 2 cut(s) 628, 714
BcoDI GTCTC 4 cut(s) 186, 202, 474, 644
BfaI CTAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 356, 838
BlsI GCNGC 2 cut(s) 357, 839
Bme18I GGWCC 2 cut(s) 307, 431
BmgT120I GGNCC 2 cut(s) 307, 431
BpuEI CTTGAG 2 cut(s) 272, 513
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 408
Bse21I CCTNAGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 123, 426
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 824
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 106, 152
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 4 cut(s) 186, 202, 474, 644
BsmI GAATGC 1 cut(s) 456
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 106, 152, 596
Bsp143I GATC 6 cut(s) 247, 334, 442, 615, 628, 714
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 124, 427
BspPI GGATC 3 cut(s) 342, 437, 610
BspQI GCTCTTC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 6 cut(s) 247, 334, 442, 615, 628, 714
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 3 cut(s) 18, 378, 623
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 384, 737
BstDEI CTNAG 4 cut(s) 132, 223, 435, 536
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 763
BstKTI GATC 6 cut(s) 250, 337, 445, 618, 631, 717
BstMAI GTCTC 4 cut(s) 186, 202, 474, 644
BstMBI GATC 6 cut(s) 247, 334, 442, 615, 628, 714
BstV1I GCAGC 1 cut(s) 824
BstX2I RGATCY 2 cut(s) 334, 615
BstYI RGATCY 2 cut(s) 334, 615
Bsu36I CCTNAGG 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 1 cut(s) 763
BtsIMutI CAGTG 2 cut(s) 231, 619
Cac8I GCNNGC 2 cut(s) 384, 737
Cfr13I GGNCC 2 cut(s) 307, 431
Csp6I GTAC 3 cut(s) 405, 702, 846
CviAII CATG 4 cut(s) 201, 331, 452, 827
CviQI GTAC 3 cut(s) 405, 702, 846
DdeI CTNAG 4 cut(s) 132, 223, 435, 536
DpnI GATC 6 cut(s) 249, 336, 444, 617, 630, 716
DpnII GATC 6 cut(s) 247, 334, 442, 615, 628, 714
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 596
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 307, 431
Eco57I CTGAAG 5 cut(s) 404, 504, 596, 708, 753
Eco81I CCTNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 204, 334, 455, 830
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 4 cut(s) 200, 330, 451, 826
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 2 cut(s) 628, 714
Fnu4HI GCNGC 2 cut(s) 356, 838
FokI GGATG 1 cut(s) 750
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 2 cut(s) 356, 838
FspBI CTAG 1 cut(s) 194
GluI GCNGC 2 cut(s) 356, 838
GsaI CCCAGC 1 cut(s) 599
Hin1II CATG 4 cut(s) 204, 334, 455, 830
HinfI GANTC 2 cut(s) 137, 262
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 14, 405
Hpy188I TCNGA 8 cut(s) 142, 247, 615, 714, 727, 772, 817, 861
Hpy188III TCNNGA 4 cut(s) 251, 434, 542, 682
Hpy8I GTNNAC 2 cut(s) 14, 405
HpyAV CCTTC 3 cut(s) 471, 732, 777
HpyCH4III ACNGT 3 cut(s) 18, 378, 623
HpyCH4V TGCA 4 cut(s) 96, 343, 382, 698
HpyF3I CTNAG 4 cut(s) 132, 223, 435, 536
Hsp92II CATG 4 cut(s) 204, 334, 455, 830
Ksp22I TGATCA 2 cut(s) 628, 714
Kzo9I GATC 6 cut(s) 247, 334, 442, 615, 628, 714
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 9 cut(s) 144, 283, 323, 421, 447, 555, 609, 743, 763
Lsp1109I GCAGC 1 cut(s) 824
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 3 cut(s) 229, 277, 571
MalI GATC 6 cut(s) 249, 336, 444, 617, 630, 716
MbiI CCGCTC 1 cut(s) 355
MboI GATC 6 cut(s) 247, 334, 442, 615, 628, 714
MboII GAAGA 6 cut(s) 94, 307, 329, 497, 571, 795
MflI RGATCY 2 cut(s) 334, 615
MhlI GDGCHC 3 cut(s) 106, 152, 596
MluCI AATT 3 cut(s) 59, 237, 554
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 3 cut(s) 127, 136, 218
MseI TTAA 2 cut(s) 35, 62
MslI CAYNNNNRTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 456
NcoI CCATGG 1 cut(s) 451
NdeI CATATG 1 cut(s) 292
NdeII GATC 6 cut(s) 247, 334, 442, 615, 628, 714
NlaIII CATG 4 cut(s) 204, 334, 455, 830
NmuCI GTSAC 2 cut(s) 229, 277
PciSI GCTCTTC 1 cut(s) 480
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 137, 262
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 357, 839
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 307, 431
PspPPI RGGWCCY 1 cut(s) 431
PsuI RGATCY 2 cut(s) 334, 615
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 3 cut(s) 406, 703, 847
RsaNI GTAC 3 cut(s) 405, 702, 846
RseI CAYNNNNRTG 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 35, 62
SatI GCNGC 2 cut(s) 356, 838
Sau3AI GATC 6 cut(s) 247, 334, 442, 615, 628, 714
Sau96I GGNCC 2 cut(s) 307, 431
SduI GDGCHC 3 cut(s) 106, 152, 596
SinI GGWCC 2 cut(s) 307, 431
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 251, 528
SmoI CTYRAG 2 cut(s) 251, 528
Sse9I AATT 3 cut(s) 59, 237, 554
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 18, 378, 623
TaqI TCGA 2 cut(s) 57, 260
TasI AATT 3 cut(s) 59, 237, 554
TatI WGTACW 2 cut(s) 701, 845
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 2 cut(s) 137, 262
Tru1I TTAA 2 cut(s) 35, 62
Tru9I TTAA 2 cut(s) 35, 62
TscAI CASTG 2 cut(s) 238, 626
TseFI GTSAC 2 cut(s) 229, 277
TseI GCWGC 1 cut(s) 837
Tsp45I GTSAC 2 cut(s) 229, 277
TspDTI ATGAA 2 cut(s) 173, 307
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 238, 626
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 307, 431
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.