Rorug02G0008800

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009820
Physical Location & Seq
Reverse (-)
723937 .. 725936
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0008800.1

Sequence Viewer

Length: 237 bp
ATGCCGAGCGGGTGTGCGATCTGCTGCGAGATTGTGCTCGCCGTCTTGCTCCCTCCCTTGGGGGTTTGCCTCAGCCACGGTTGCTGCACCGTTGAGTTTCTGATATGCTTGTTGTTGACTTGTCTGGGTTACCTTCCGGGAATCATCTACGCGCTCTACATCATCGTGTTTGCTAATCGCGAGGAGTACTTTGACGAGCACCGCCGTCCCCTCTACGCTCCTGCTTATTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

78

Amino Acids

8.59

Weight (kDa)

5.01

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 56 1.6e-18 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32350 AT4G32350 AT4G32350
fragaria_vesca FvH4_1g04930 FvH4_3g42832
malus_domestica MD02G1047800.v1.1 MD15G1186300.v1.1
prunus_persica Prupe.7G230400_v2.0.a1
pyrus_communis pycom02g04000 pycom15g16700
rosa_chinensis RchiOBHm_Chr2g0090521
rosa_laevigata RLG00000016119
rosa_multiflora Rmu_co8330093.1_g000001 Rmu_sc0004514.1_g000026
rosa_roxburghii Rroxscaffold_2G00151050
rosa_rugosa Rorug02G0008800
rosa_samantha Rh2AG054000 Rh2BG053500 Rh2CG055700 Rh2DG054200
rosa_wichuraiana Rw2G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 2 cut(s) 152, 180
AciI CCGC 2 cut(s) 9, 202
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 58, 59
Alw21I GWGCWC 2 cut(s) 39, 201
ApeKI GCWGC 2 cut(s) 24, 84
AspLEI GCGC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 39, 201
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 11, 71
BceAI ACGGC 2 cut(s) 26, 189
BcnI CCSGG 1 cut(s) 138
BisI GCNGC 2 cut(s) 25, 85
BlsI GCNGC 2 cut(s) 26, 86
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 57, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 59
BseDI CCNNGG 2 cut(s) 57, 76
BseLI CCNNNNNNNGG 2 cut(s) 58, 59
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 11, 71
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 152, 180
BsiHKAI GWGCWC 2 cut(s) 39, 201
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 58, 59
BsmFI GGGAC 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 39, 201
Bsp143I GATC 1 cut(s) 18
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 2 cut(s) 9, 202
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 152, 180
BsrBI CCGCTC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 57, 76
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 80, 91
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 76
BstEII GGTNACC 1 cut(s) 128
BstFNI CGCG 2 cut(s) 152, 180
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 2 cut(s) 152, 180
BstV1I GCAGC 2 cut(s) 11, 71
BtgI CCRYGG 1 cut(s) 76
BtuMI TCGCGA 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 1 cut(s) 75
CviKI_1 RGCY 1 cut(s) 75
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaiI YATR 1 cut(s) 106
FaqI GGGAC 1 cut(s) 192
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 25, 85
Fsp4HI GCNGC 2 cut(s) 25, 85
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 25, 85
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 80, 91
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 71
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 54, 223
LpnPI CCDG 3 cut(s) 110, 150, 216
Lsp1109I GCAGC 2 cut(s) 11, 71
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 9
MboI GATC 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 39, 201
MnlI CCTC 4 cut(s) 63, 80, 175, 221
MseI TTAA 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 2 cut(s) 152, 180
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 138
NdeII GATC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 26, 86
PspEI GGTNACC 1 cut(s) 128
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 2 cut(s) 25, 85
Sau3AI GATC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 39, 201
SetI ASST 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 164
SsiI CCGC 2 cut(s) 9, 202
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 80, 91
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TseI GCWGC 2 cut(s) 24, 84
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.