Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003881

Physical Location & Seq

Genomic Coordinates Forward (+)

22348044 .. 22350672

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGGATCCGGAAAAGACAGGTCCCGTTACCCCTCTCTTCTCTCTCGCCCGTGCCTCTACCAGATCCCCACCTCCTCAACCTCAACCACTGCTCATCATCACCTCCCCTGGTGCAACAACAACAACAACAACAACAACAACAACGTATCCACCACGATCCAAAACCCTCCCAACGACTTGATCATGTGGGCCCTCTCCCACATCCTCAGCCGTCTGATCATCCCAATCGCCCCCGGCCGATTGGAGCAGCGAGCAACGACGGCTGTGATTTTTCCGGGGAGCTGAAGAAGGGAAATTACTGCTCGGAGACATTGAAAGGGGAAGACGAAGATGGATCAAGAGATCAGGCAGAGGAGAAGGGTAATGATACCAGGAAGGGAAGCACATTGGGTGCAGAAACTGTATCTGGGTTTCCTTCAGAATCATCAAGTTCTTCTCATCGAGTTCTTGGGAGATGGTTTGAGGGAGAGAAAGCGTTCCCATTCAAGAAGCGAAGAGGGAGCTTCGGGGAGGCGACGAGAATGGAGAAGGAGAAGAAATTAACGCAGACCAAGATGGACAAGAAATGTGATGGTCAACAGTGTGATGATAAGAAGCAAGAAGATAGAGTAATTACGAAAGAAATCCTCGACCATACTGTTGGTAGTGGTACGAGTCCAAAGAAGAGAGCAAGAGGCAATGCAATAATGGAGGGATCGAGGTGCAGTCGAGTTAACGGAAGAGGATGGAGGTGTTGTCAACAGACACTTGTCGGGTACTCTCTTTGCGAGCATCACTTGGGCAAAGGAAGGCTTAGGAGCTTGAACAGCGTCCGAAGTCGCTCTTTTGCGAGTTCTGTTGGATCCATAGAGACCAAGTCCAAGCAATTATCAAAACCCTCGTGTTTGGAGCTGCCAAAGGAAGAAGAGCGTAAACCTGATATGCTACTAGATGTCAATCATCATGGTGAAGATCAACGACACGAAAATGAATACGGTGAAGAGAAAAAGCCGTTGGTGGTTACGAAGAAGAGAATGAAACTCGGTATTGTAAAGGCACGATCCATGAGCAGCTTGCTTGGGCAAACGAACAGTGCAACTGCAGTGGATGATGAGAATAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016143 GO:0016144 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0018858 GO:0019605 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046459 GO:0047760 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

368

Amino Acids

41.12

Weight (kDa)

9.31

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	231 - 271	2.8e-15	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65880 AT1G65890 AT1G66120
fragaria_vesca	FvH4_1g27440 FvH4_1g27450
malus_domestica	MD09G1280400.v1.1 MD17G1287600.v1.1
prunus_persica	Prupe.3G013700_v2.0.a1
pyrus_communis	pycom09g18850 pycom17g27060
rosa_chinensis	RchiOBHm_Chr3g0488561 RchiOBHm_Chr3g0488571
rosa_laevigata	RLG00000022942 RLG00000022943
rosa_multiflora	Rmu_sc0004402.1_g000006 Rmu_sc0004402.1_g000007 Rmu_sc0005363.1_g000024 Rmu_sc0005363.1_g000025
rosa_roxburghii	Rroxscaffold_6G00394130 Rroxscaffold_6G00394140
rosa_rugosa	Rorug03G0239300 Rorug03G0239400
rosa_samantha	Rh3AG288300 Rh3AG288400 Rh3BG325000 Rh3BG325100 Rh3CG322200 Rh3CG322300 Rh3DG321000 Rh3DG321100 Rh4AG012700 Rh7BG359000
rosa_wichuraiana	Rw3G025510 Rw3G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	9
AclWI	GGATC	8 cut(s)	14, 59, 152, 343, 703, 837, 850, 1035
AcoI	YGGCCR	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	305, 402
AfaI	GTAC	2 cut(s)	652, 758
AgsI	TTSAA	3 cut(s)	316, 487, 805
AjnI	CCWGG	2 cut(s)	108, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AluBI	AGCT	5 cut(s)	283, 504, 801, 892, 1053
AluI	AGCT	5 cut(s)	283, 504, 801, 892, 1053
Alw26I	GTCTC	2 cut(s)	302, 845
AlwI	GGATC	8 cut(s)	14, 59, 152, 343, 703, 837, 850, 1035
AlwNI	CAGNNNCTG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	2 cut(s)	190, 236
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	3 cut(s)	248, 892, 1050
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	22, 190, 191
AsuC2I	CCSGG	2 cut(s)	235, 277
AsuHPI	GGTGA	3 cut(s)	93, 959, 989
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	194
BamHI	GGATCC	2 cut(s)	6, 842
BanII	GRGCYC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BauI	CACGAG	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	260, 879, 1062
BccI	CCATC	5 cut(s)	326, 450, 550, 566, 720
BceAI	ACGGC	3 cut(s)	196, 277, 976
BciT130I	CCWGG	2 cut(s)	110, 373
BciVI	GTATCC	1 cut(s)	158
BclI	TGATCA	2 cut(s)	181, 217
BcnI	CCSGG	2 cut(s)	235, 277
BcoDI	GTCTC	2 cut(s)	302, 845
BfaI	CTAG	1 cut(s)	929
BfmI	CTRYAG	1 cut(s)	1080
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	3 cut(s)	249, 893, 1051
BlsI	GCNGC	3 cut(s)	250, 894, 1052
Bme1390I	CCNGG	4 cut(s)	110, 235, 277, 373
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	22, 190, 191
BmiI	GGNNCC	4 cut(s)	8, 24, 192, 844
BmrFI	CCNGG	4 cut(s)	110, 235, 277, 373
BmsI	GCATC	1 cut(s)	781
BoxI	GACNNNNGTC	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	2 cut(s)	207, 794
BpuMI	CCSGG	2 cut(s)	235, 277
BsaBI	GATNNNNATC	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	108, 233, 276
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bse3DI	GCAATG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	936
BseAI	TCCGGA	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	110, 373
BseDI	CCNNGG	3 cut(s)	108, 233, 276
BseGI	GGATG	4 cut(s)	202, 220, 731, 1093
BseJI	GATNNNNATC	1 cut(s)	936
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	65, 368
BseSI	GKGCMC	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	260, 879, 1062
BsgI	GTGCAG	2 cut(s)	414, 724
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	192, 238
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	10, 235, 276
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	302, 845
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	192, 238
Bso31I	GGTCTC	1 cut(s)	845
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	9
BspANI	GGCC	2 cut(s)	192, 238
BspCNI	CTCAG	1 cut(s)	220
BspEI	TCCGGA	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	8, 24, 192, 844
BspMAI	CTGCAG	1 cut(s)	1084
BspPI	GGATC	8 cut(s)	14, 59, 152, 343, 703, 837, 850, 1035
BspQI	GCTCTTC	1 cut(s)	900
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	108, 233, 276
BssSI	CACGAG	1 cut(s)	880
Bst2BI	CACGAG	1 cut(s)	880
Bst2UI	CCWGG	2 cut(s)	110, 373
Bst4CI	ACNGT	5 cut(s)	403, 582, 640, 977, 1073
Bst6I	CTCTTC	7 cut(s)	43, 490, 659, 715, 900, 975, 1004
BstC8I	GCNNGC	3 cut(s)	253, 770, 1055
BstDEI	CTNAG	2 cut(s)	207, 794
BstF5I	GGATG	4 cut(s)	202, 220, 731, 1093
BstMAI	GTCTC	2 cut(s)	302, 845
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 807
BstNI	CCWGG	2 cut(s)	110, 373
BstPAI	GACNNNNGTC	1 cut(s)	749
BstSCI	CCNGG	4 cut(s)	108, 233, 275, 371
BstSFI	CTRYAG	1 cut(s)	1080
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	260, 879, 1062
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	3 cut(s)	6, 64, 842
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	3 cut(s)	6, 64, 842
BstZI	CGGCCG	1 cut(s)	236
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	192, 238
BtsCI	GGATG	4 cut(s)	202, 220, 731, 1093
BtsI	GCAGTG	2 cut(s)	88, 1089
BtsIMutI	CAGTG	4 cut(s)	88, 587, 1078, 1089
Cac8I	GCNNGC	3 cut(s)	253, 770, 1055
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	22, 190, 191
CseI	GACGC	1 cut(s)	799
Csp6I	GTAC	2 cut(s)	651, 757
CspCI	CAANNNNNGTGG	2 cut(s)	1065, 1100
CviAII	CATG	3 cut(s)	185, 944, 1045
CviQI	GTAC	2 cut(s)	651, 757
DdeI	CTNAG	2 cut(s)	207, 794
EaeI	YGGCCR	1 cut(s)	236
EagI	CGGCCG	1 cut(s)	236
Eam1104I	CTCTTC	7 cut(s)	43, 490, 659, 715, 900, 975, 1004
EarI	CTCTTC	7 cut(s)	43, 490, 659, 715, 900, 975, 1004
EclXI	CGGCCG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	22
Eco52I	CGGCCG	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	305, 402
EcoO109I	RGGNCCY	2 cut(s)	22, 191
EcoRII	CCWGG	2 cut(s)	108, 371
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	3 cut(s)	188, 947, 1048
FaiI	YATR	6 cut(s)	186, 636, 848, 923, 945, 1046
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 808, 840
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	3 cut(s)	184, 943, 1044
FbaI	TGATCA	2 cut(s)	181, 217
Fnu4HI	GCNGC	3 cut(s)	249, 893, 1051
FokI	GGATG	4 cut(s)	189, 207, 738, 1100
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	249, 893, 1051
FspBI	CTAG	1 cut(s)	929
GluI	GCNGC	3 cut(s)	249, 893, 1051
HaeIII	GGCC	2 cut(s)	192, 238
HapII	CCGG	3 cut(s)	10, 235, 276
HgaI	GACGC	1 cut(s)	799
Hin1II	CATG	3 cut(s)	188, 947, 1048
HincII	GTYRAC	3 cut(s)	578, 715, 740
HindII	GTYRAC	3 cut(s)	578, 715, 740
HinfI	GANTC	2 cut(s)	422, 655
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	3 cut(s)	10, 235, 276
HphI	GGTGA	3 cut(s)	93, 959, 989
Hpy166II	GTNNAC	4 cut(s)	578, 715, 740, 914
Hpy188I	TCNGA	4 cut(s)	217, 307, 421, 815
Hpy188III	TCNNGA	3 cut(s)	10, 339, 487
Hpy8I	GTNNAC	4 cut(s)	578, 715, 740, 914
Hpy99I	CGWCG	2 cut(s)	263, 520
HpyAV	CCTTC	6 cut(s)	283, 352, 370, 426, 523, 783
HpyCH4III	ACNGT	5 cut(s)	403, 582, 640, 977, 1073
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	115, 395, 683, 705, 1076, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 807
HpyF3I	CTNAG	2 cut(s)	207, 794
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	188, 947, 1048
Kpn2I	TCCGGA	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	181, 217
KspAI	GTTAAC	1 cut(s)	715
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	5 cut(s)	245, 280, 501, 798, 889
Lsp1109I	GCAGC	3 cut(s)	260, 879, 1062
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	1 cut(s)	929
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	27, 1000
MflI	RGATCY	3 cut(s)	6, 64, 842
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	4 cut(s)	295, 539, 612, 866
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	820
MroI	TCCGGA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	2 cut(s)	542, 714
MslI	CAYNNNNRTG	2 cut(s)	945, 966
MspI	CCGG	3 cut(s)	10, 235, 276
MspR9I	CCNGG	4 cut(s)	110, 235, 277, 373
MvaI	CCWGG	2 cut(s)	110, 373
MwoI	GCNNNNNNNGC	2 cut(s)	261, 807
NciI	CCSGG	2 cut(s)	235, 277
NlaIII	CATG	3 cut(s)	188, 947, 1048
NlaIV	GGNNCC	4 cut(s)	8, 24, 192, 844
PciSI	GCTCTTC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	3 cut(s)	250, 894, 1052
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
PpuMI	RGGWCCY	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	108, 371
PspGI	CCWGG	2 cut(s)	108, 371
PspN4I	GGNNCC	4 cut(s)	8, 24, 192, 844
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	22, 190, 191
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	6, 64, 842
PsyI	GACNNNGTC	1 cut(s)	856
RsaI	GTAC	2 cut(s)	652, 758
RsaNI	GTAC	2 cut(s)	651, 757
RseI	CAYNNNNRTG	2 cut(s)	945, 966
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	2 cut(s)	542, 714
SatI	GCNGC	3 cut(s)	249, 893, 1051
Sau96I	GGNCC	3 cut(s)	22, 190, 191
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	4 cut(s)	110, 235, 277, 373
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	1080
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	945, 966
Sse9I	AATT	4 cut(s)	295, 539, 612, 866
SspMI	CTAG	1 cut(s)	929
StyD4I	CCNGG	4 cut(s)	108, 233, 275, 371
TaaI	ACNGT	5 cut(s)	403, 582, 640, 977, 1073
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	442, 630, 698, 709
TasI	AATT	4 cut(s)	295, 539, 612, 866
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	542, 714
Tru9I	TTAA	2 cut(s)	542, 714
TscAI	CASTG	4 cut(s)	95, 587, 1078, 1089
TseI	GCWGC	3 cut(s)	248, 892, 1050
TspDTI	ATGAA	2 cut(s)	984, 1031
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	4 cut(s)	95, 587, 1078, 1089
Tth111I	GACNNNGTC	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.