Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003881

Physical Location & Seq

Genomic Coordinates Forward (+)

22367218 .. 22370444

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAGCGGCGTGGCTCTGGGTTGGTGGTTGGGTTGTCGGTTCCGGGCATCAGCGGTTCGTTCTCGATCTGCTTTTCTGGTTCATGGATGTTTTGCGGCGATGGTGCAGTGGCGGATCTTGGGGTCCCGGCGATGATCTCTTTCGCCACCGTCCCTGCGTGTTGGTTTGTGGCTGCCCTGTTCTAGATGAGGCGGTGCCGATCCCGGATGGGATCTATCCGATCTCGTTTTTGGATCTGTGGGGTTATGATCCTTGTGCTGGGGTGGTTTTTGTGGTGTGTCAGGGCGGGGCTGCGGCGAAGGGGTTTGACACAAGATCAGTTACTACATTCGCTGAACAAAAGTTCTCCAGAGATGGTATTCAAGTAAAAACAGCTCTGAGTGGCCAGGGCTTAAATGATTGCTGCAGTGCAATCCAAGCAAAATTGAAGTGTGATTGTGGAATCCTTGAAGCCCTGAAGGTGGTTAGCTTGCAAGAATTTGCCTCAATTTTGGAGCCTAACCTCTGCAGAATCGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016143 GO:0016144 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0018858 GO:0019605 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046459 GO:0047760 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

185

Amino Acids

19.99

Weight (kDa)

5.11

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65880 AT1G65890 AT1G66120
fragaria_vesca	FvH4_1g27440 FvH4_1g27450
malus_domestica	MD09G1280400.v1.1 MD17G1287600.v1.1
prunus_persica	Prupe.3G013700_v2.0.a1
pyrus_communis	pycom09g18850 pycom17g27060
rosa_chinensis	RchiOBHm_Chr3g0488561 RchiOBHm_Chr3g0488571
rosa_laevigata	RLG00000022942 RLG00000022943
rosa_multiflora	Rmu_sc0004402.1_g000006 Rmu_sc0004402.1_g000007 Rmu_sc0005363.1_g000024 Rmu_sc0005363.1_g000025
rosa_roxburghii	Rroxscaffold_6G00394130 Rroxscaffold_6G00394140
rosa_rugosa	Rorug03G0239300 Rorug03G0239400
rosa_samantha	Rh3AG288300 Rh3AG288400 Rh3BG325000 Rh3BG325100 Rh3CG322200 Rh3CG322300 Rh3DG321000 Rh3DG321100 Rh4AG012700 Rh7BG359000
rosa_wichuraiana	Rw3G025510 Rw3G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AciI	CCGC	7 cut(s)	8, 55, 97, 114, 194, 288, 296
AclWI	GGATC	5 cut(s)	124, 196, 221, 243, 245
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	260, 463
AgsI	TTSAA	3 cut(s)	365, 430, 452
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	377, 471
AluI	AGCT	2 cut(s)	377, 471
AlwI	GGATC	5 cut(s)	124, 196, 221, 243, 245
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	4 cut(s)	5, 174, 293, 405
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	3 cut(s)	46, 129, 206
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	17, 161, 280, 392
BccI	CCATC	3 cut(s)	96, 203, 350
BciT130I	CCWGG	1 cut(s)	389
BcnI	CCSGG	3 cut(s)	46, 129, 206
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	2 cut(s)	406, 508
BisI	GCNGC	7 cut(s)	6, 9, 98, 175, 294, 297, 406
BlsI	GCNGC	7 cut(s)	7, 10, 99, 176, 295, 298, 407
Bme1390I	CCNGG	4 cut(s)	46, 129, 206, 389
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	5 cut(s)	43, 126, 127, 198, 498
BmrFI	CCNGG	4 cut(s)	46, 129, 206, 389
BmsI	GCATC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	334
BpuMI	CCSGG	3 cut(s)	46, 129, 206
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 463
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	94, 214
BseLI	CCNNNNNNNGG	2 cut(s)	260, 463
BseMII	CTCAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	17, 161, 280, 392
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	45, 129, 206
BslFI	GGGAC	2 cut(s)	111, 138
BslI	CCNNNNNNNGG	2 cut(s)	260, 463
BsmFI	GGGAC	2 cut(s)	111, 138
BsnI	GGCC	1 cut(s)	387
Bsp143I	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
BspACI	CCGC	7 cut(s)	8, 55, 97, 114, 194, 288, 296
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	5 cut(s)	43, 126, 127, 198, 498
BspMAI	CTGCAG	2 cut(s)	410, 512
BspPI	GGATC	5 cut(s)	124, 196, 221, 243, 245
BspT107I	GGYRCC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	94, 214
BstKTI	GATC	9 cut(s)	70, 119, 139, 204, 216, 225, 238, 253, 320
BstMBI	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	44, 127, 204, 387
BstSFI	CTRYAG	2 cut(s)	406, 508
BstV1I	GCAGC	4 cut(s)	17, 161, 280, 392
BstX2I	RGATCY	3 cut(s)	116, 213, 235
BstYI	RGATCY	3 cut(s)	116, 213, 235
BsuRI	GGCC	1 cut(s)	387
BtgZI	GCGATG	2 cut(s)	115, 147
BtsCI	GGATG	2 cut(s)	94, 214
BtsI	GCAGTG	2 cut(s)	115, 415
BtsIMutI	CAGTG	2 cut(s)	115, 415
Cac8I	GCNNGC	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	9 cut(s)	16, 174, 293, 377, 387, 393, 455, 471, 499
CviKI_1	RGCY	9 cut(s)	16, 174, 293, 377, 387, 393, 455, 471, 499
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	9 cut(s)	69, 118, 138, 203, 215, 224, 237, 252, 319
DpnII	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	387
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 249, 520, 556
FaqI	GGGAC	2 cut(s)	111, 138
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	7 cut(s)	6, 9, 98, 175, 294, 297, 406
FokI	GGATG	2 cut(s)	101, 221
Fsp4HI	GCNGC	7 cut(s)	6, 9, 98, 175, 294, 297, 406
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	7 cut(s)	6, 9, 98, 175, 294, 297, 406
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	3 cut(s)	45, 129, 206
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	2 cut(s)	444, 513
HpaII	CCGG	3 cut(s)	45, 129, 206
Hpy188I	TCNGA	2 cut(s)	222, 381
Hpy188III	TCNNGA	4 cut(s)	65, 185, 351, 524
HpyAV	CCTTC	2 cut(s)	295, 454
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	5 cut(s)	108, 408, 413, 475, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	88
KflI	GGGWCCC	1 cut(s)	125
Kzo9I	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
LmnI	GCTCC	2 cut(s)	496, 551
Lsp1109I	GCAGC	4 cut(s)	17, 161, 280, 392
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	9 cut(s)	69, 118, 138, 203, 215, 224, 237, 252, 319
MboI	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
MflI	RGATCY	3 cut(s)	116, 213, 235
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	3 cut(s)	425, 479, 489
MluNI	TGGCCA	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	3 cut(s)	184, 496, 515
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	8, 55
MspI	CCGG	3 cut(s)	45, 129, 206
MspR9I	CCNGG	4 cut(s)	46, 129, 206, 389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	3 cut(s)	46, 129, 206
NdeII	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	5 cut(s)	43, 126, 127, 198, 498
PfeI	GAWTC	2 cut(s)	444, 513
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	7, 10, 99, 176, 295, 298, 407
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	5 cut(s)	43, 126, 127, 198, 498
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	410, 512
PsuI	RGATCY	3 cut(s)	116, 213, 235
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	7 cut(s)	6, 9, 98, 175, 294, 297, 406
Sau3AI	GATC	9 cut(s)	67, 116, 136, 201, 213, 222, 235, 250, 317
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	46, 129, 206, 389
SetI	ASST	4 cut(s)	379, 465, 473, 507
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	406, 508
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	3 cut(s)	425, 479, 489
SsiI	CCGC	7 cut(s)	8, 55, 97, 114, 194, 288, 296
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	4 cut(s)	44, 127, 204, 387
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	425, 479, 489
TauI	GCSGC	3 cut(s)	11, 100, 299
TfiI	GAWTC	2 cut(s)	444, 513
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	2 cut(s)	115, 415
TseI	GCWGC	4 cut(s)	5, 174, 293, 405
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	115, 415
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.