Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003881

Physical Location & Seq

Genomic Coordinates Reverse (-)

37777268 .. 37779278

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG359000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGAGTGCACCGATGAATATGCTTCTCAAATGCCATGCCAATTACGCAGCTCTCACCCCTACAACTTTCTTGAAGAGAGCTGCTTCGTTTTATTCCAACCGTACTTCCCTCATCTACGAAGGAACTCGCTTCACATGGCGCCAAACCCATGACCGTTGCTGCCGTCTCGCTTCTTCCCTTCTTTCCCTTAACATTGCCAAACACGACGTGGTTTCTGTGTTGGCTCCCAATATTCCTGCATTGTATGAGATGCATTTCGCCGTGCCGATGGCTGGTGCGGTACTCAACACCATCAACTCTCGACTTGATCCCAAAAACATCGCCTCAATTCTCAAACACTCTGGCGCCAAGGTCTTCTTTGTCGACTACCAGTATGTCCCTCAGGCGCGTGAGGCACTCAGGATTCTCATGATGAGCTCTCAGCCATCCATGATGCCGTTGGTCATTGTGATCGACGACATCGACTCACCCACCGGAGTTCAGTTGGGAGAACTAGAGTACGAGCAGCTCATCCACAAGGGCAATCCCCGGTTCGTCGCCGTCGACGTCGCCGACGAGTGGGACCCAATTTCCTTGAATTACACTTCTGGCACAACTTCTAAACCAAAAGGTGTTGTGTACAGCCACAGAGGTGCTTACTTGAGCACTCTGAGCCTAATTCTGGGTTGGGAAATGGGGGGCGAGCCTGTTTATCTATGGACGCTCCCTATGTTCCACTGCAACGGCTGGACCTTCACCTGGGGCGTGGCGGCACGCGGTGGGACCAACGTCTGCCTCCGCAACACCACCGCGTACGACATCTACCGCAACATTAAAAGACACCACGTGACCCATATGTGTTGCGCTCCCATCATTTTCAACATACTCCTCGAGGCCAAGCCCCACGAGCGCTGCCACATCACAAACCCTATTGAGATCCTCACCGGCGGAGCACCACCACCGGCTCCGCTGCTCGAGAAAATTGAGCCGCTCGGGTTCAAAGTCACCCCCGCGTACGGCCTGACCGAAGCAACCGGACCGGCTCTGGTTTGCGAGTGGCAGGCCAAGTGGAACAAGCTACCGAAAGATGAGCAATCCAAGCTGAAAGCGAGGCAAGGGATAAGCATACTGACTCTAGCTGATGTGGACGTGAAGGACCTGGATACAATGGCGAGTGTTCCCCACGACGGCAAGACCATGGGAGAGATTGTGTTGCGTGGAAGTAGCATTATGAAAGGCTACTTCAAGGACAGCGCGGCCACCAACAAGGCATTCCAGAACGGCTGGTTCTTGACCGGAGACGTCGGCGTTATACACCCCGATGGTTACCTAGAAATCAAGGACAGATCGAAAGACGTGATCATCTCCGGTGGGGAGAACATCAGCAGTGTGGAATTGGAGAGCGTGCTCTACAGACACCCAAACGTTTTGGAGGCGGCGGTGGTGGCAATGCCGCACCCTCGCTGGGGTGAGAGTCCCTGTGCTTTCGTGACGCTCAGAAGTGACACCACCGTCGTGACGGAGGCTGACATCATCGCCTACTGTCGGAAGAATCTGCCGCACTTTATGGCTCCGAAAAAGGTGGAGTTTGTGGCTGAGCTGCCCAAGACTTCGACCGGGAAGATTCAAAAATTCGAGCTCAGGGCTAGGGCCAAGGCGTTCAACGTCGTCGAATCATCGGATCAACAAGTCATTGATCCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016143 GO:0016144 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0018858 GO:0019605 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046459 GO:0047760 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

561

Amino Acids

62.17

Weight (kDa)

7.94

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	25 - 408	8.5e-81	AMP-binding enzyme
AMP-binding_C	PF13193	458 - 534	1.2e-25	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65880 AT1G65890 AT1G66120
fragaria_vesca	FvH4_1g27440 FvH4_1g27450
malus_domestica	MD09G1280400.v1.1 MD17G1287600.v1.1
prunus_persica	Prupe.3G013700_v2.0.a1
pyrus_communis	pycom09g18850 pycom17g27060
rosa_chinensis	RchiOBHm_Chr3g0488561 RchiOBHm_Chr3g0488571
rosa_laevigata	RLG00000022942 RLG00000022943
rosa_multiflora	Rmu_sc0004402.1_g000006 Rmu_sc0004402.1_g000007 Rmu_sc0005363.1_g000024 Rmu_sc0005363.1_g000025
rosa_roxburghii	Rroxscaffold_6G00394130 Rroxscaffold_6G00394140
rosa_rugosa	Rorug03G0239300 Rorug03G0239400
rosa_samantha	Rh3AG288300 Rh3AG288400 Rh3BG325000 Rh3BG325100 Rh3CG322200 Rh3CG322300 Rh3DG321000 Rh3DG321100 Rh4AG012700 Rh7BG359000
rosa_wichuraiana	Rw3G025510 Rw3G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1490
AatII	GACGTC	2 cut(s)	549, 1284
AbsI	CCTCGAGG	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	138, 344
AccBSI	CCGCTC	1 cut(s)	970
AccI	GTMKAC	2 cut(s)	363, 543
AccII	CGCG	5 cut(s)	388, 756, 791, 992, 1235
AclI	AACGTT	1 cut(s)	1404
AclWI	GGATC	4 cut(s)	302, 910, 1668, 1670
AcoI	YGGCCR	1 cut(s)	1236
AcsI	RAATTY	1 cut(s)	1610
AcvI	CACGTG	1 cut(s)	826
AcyI	GRCGYC	4 cut(s)	139, 345, 546, 1281
AdeI	CACNNNGTG	3 cut(s)	208, 758, 826
AfaI	GTAC	6 cut(s)	103, 282, 500, 620, 794, 995
AfeI	AGCGCT	1 cut(s)	890
AfiI	CCNNNNNNNGG	9 cut(s)	272, 558, 661, 738, 995, 1166, 1444, 1445, 1524
AgsI	TTSAA	7 cut(s)	73, 577, 859, 979, 1225, 1607, 1642
AjiI	CACGTC	3 cut(s)	208, 1129, 1336
AjnI	CCWGG	2 cut(s)	737, 1137
AjuI	GAANNNNNNNTTGG	2 cut(s)	1235, 1267
AleI	CACNNNNGTG	2 cut(s)	630, 1493
AluBI	AGCT	9 cut(s)	50, 80, 417, 508, 1057, 1081, 1118, 1579, 1618
AluI	AGCT	9 cut(s)	50, 80, 417, 508, 1057, 1081, 1118, 1579, 1618
Alw21I	GWGCWC	6 cut(s)	10, 419, 647, 934, 1389, 1620
Alw26I	GTCTC	2 cut(s)	170, 1272
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	4 cut(s)	302, 910, 1668, 1670
Ama87I	CYCGRG	3 cut(s)	869, 953, 971
Aor51HI	AGCGCT	1 cut(s)	890
AoxI	GGCC	5 cut(s)	873, 997, 1041, 1236, 1629
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	7 cut(s)	47, 80, 159, 505, 891, 949, 1579
ApoI	RAATTY	1 cut(s)	1610
AspLEI	GCGC	6 cut(s)	141, 347, 388, 845, 891, 1235
AspS9I	GGNCC	6 cut(s)	562, 729, 762, 1016, 1135, 1629
AsuC2I	CCSGG	2 cut(s)	529, 1597
AsuHPI	GGTGA	6 cut(s)	46, 459, 727, 913, 976, 1460
AvaI	CYCGRG	3 cut(s)	869, 953, 971
AvaII	GGWCC	5 cut(s)	562, 729, 762, 1016, 1135
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	138, 344
BanII	GRGCYC	2 cut(s)	419, 1620
BauI	CACGAG	1 cut(s)	884
BbrPI	CACGTG	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	6 cut(s)	10, 419, 647, 934, 1389, 1620
BbvI	GCAGC	7 cut(s)	59, 67, 146, 517, 878, 936, 1566
BccI	CCATC	5 cut(s)	262, 299, 433, 857, 1295
BceAI	ACGGC	8 cut(s)	147, 245, 421, 524, 739, 1012, 1183, 1276
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	739, 1139
BciVI	GTATCC	1 cut(s)	1135
BclI	TGATCA	1 cut(s)	1338
BcnI	CCSGG	2 cut(s)	529, 1597
BcoDI	GTCTC	2 cut(s)	170, 1272
BfaI	CTAG	5 cut(s)	494, 1115, 1310, 1626, 1680
BfmI	CTRYAG	1 cut(s)	1390
BfoI	RGCGCY	3 cut(s)	142, 348, 892
BfuI	GTATCC	1 cut(s)	1135
BlpI	GCTNAGC	1 cut(s)	1575
Bme1390I	CCNGG	4 cut(s)	529, 739, 1139, 1597
Bme18I	GGWCC	5 cut(s)	562, 729, 762, 1016, 1135
BmeT110I	CYCGRG	3 cut(s)	869, 953, 971
BmgBI	CACGTC	3 cut(s)	208, 1129, 1336
BmgT120I	GGNCC	6 cut(s)	562, 729, 762, 1016, 1135, 1629
BmiI	GGNNCC	8 cut(s)	140, 225, 346, 563, 564, 763, 945, 1551
BmrFI	CCNGG	4 cut(s)	529, 739, 1139, 1597
BmsI	GCATC	2 cut(s)	240, 423
BoxI	GACNNNNGTC	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	1619
Bpu1102I	GCTNAGC	1 cut(s)	1575
BpuEI	CTTGAG	1 cut(s)	661
BpuMI	CCSGG	2 cut(s)	529, 1597
BsaAI	YACGTR	1 cut(s)	826
BsaHI	GRCGYC	4 cut(s)	139, 345, 546, 1281
BsaJI	CCNNGG	5 cut(s)	348, 527, 738, 1176, 1632
BsaWI	WCCGGW	4 cut(s)	473, 1013, 1274, 1346
BsaXI	ACNNNNNCTCC	2 cut(s)	1173, 1203
Bsc4I	CCNNNNNNNGG	9 cut(s)	272, 558, 661, 738, 995, 1166, 1444, 1445, 1524
Bse118I	RCCGGY	3 cut(s)	923, 940, 1018
Bse1I	ACTGG	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	192, 1434
BseBI	CCWGG	2 cut(s)	739, 1139
BseDI	CCNNGG	5 cut(s)	348, 527, 738, 1176, 1632
BseGI	GGATG	2 cut(s)	425, 510
BseLI	CCNNNNNNNGG	9 cut(s)	272, 558, 661, 738, 995, 1166, 1444, 1445, 1524
BseMI	GCAATG	2 cut(s)	192, 1434
BseMII	CTCAG	7 cut(s)	395, 412, 434, 641, 1489, 1566, 1633
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	7 cut(s)	59, 67, 146, 517, 878, 936, 1566
BseYI	CCCAGC	1 cut(s)	1443
Bsh1236I	CGCG	5 cut(s)	388, 756, 791, 992, 1235
Bsh1285I	CGRYCG	1 cut(s)	1596
BshFI	GGCC	5 cut(s)	875, 999, 1043, 1238, 1631
BshNI	GGYRCC	2 cut(s)	138, 344
BsiEI	CGRYCG	1 cut(s)	1596
BsiHKAI	GWGCWC	6 cut(s)	10, 419, 647, 934, 1389, 1620
BsiHKCI	CYCGRG	3 cut(s)	869, 953, 971
BsiSI	CCGG	9 cut(s)	474, 529, 924, 941, 1014, 1019, 1275, 1347, 1596
BsiWI	CGTACG	2 cut(s)	792, 993
BslFI	GGGAC	4 cut(s)	362, 575, 775, 1440
BslI	CCNNNNNNNGG	9 cut(s)	272, 558, 661, 738, 995, 1166, 1444, 1445, 1524
BsmAI	GTCTC	2 cut(s)	170, 1272
BsmBI	CGTCTC	2 cut(s)	170, 1272
BsmFI	GGGAC	4 cut(s)	362, 575, 775, 1440
BsmI	GAATGC	1 cut(s)	1250
BsnI	GGCC	5 cut(s)	875, 999, 1043, 1238, 1631
BsoBI	CYCGRG	3 cut(s)	869, 953, 971
Bsp1286I	GDGCHC	6 cut(s)	10, 419, 647, 934, 1389, 1620
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
Bsp1720I	GCTNAGC	1 cut(s)	1575
Bsp19I	CCATGG	1 cut(s)	1176
BspANI	GGCC	5 cut(s)	875, 999, 1043, 1238, 1631
BspCNI	CTCAG	7 cut(s)	394, 411, 433, 642, 1488, 1567, 1632
BspFNI	CGCG	5 cut(s)	388, 756, 791, 992, 1235
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	8 cut(s)	140, 225, 346, 563, 564, 763, 945, 1551
BspPI	GGATC	4 cut(s)	302, 910, 1668, 1670
BspT107I	GGYRCC	2 cut(s)	138, 344
BsrBI	CCGCTC	1 cut(s)	970
BsrDI	GCAATG	2 cut(s)	192, 1434
BsrFI	RCCGGY	3 cut(s)	923, 940, 1018
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	3 cut(s)	923, 940, 1018
BssECI	CCNNGG	5 cut(s)	348, 527, 738, 1176, 1632
BssMI	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
BssNI	GRCGYC	4 cut(s)	139, 345, 546, 1281
BssSI	CACGAG	1 cut(s)	884
BssT1I	CCWWGG	3 cut(s)	348, 1176, 1632
Bst2BI	CACGAG	1 cut(s)	884
Bst2UI	CCWGG	2 cut(s)	739, 1139
Bst4CI	ACNGT	4 cut(s)	101, 155, 1492, 1523
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	4 cut(s)	139, 345, 546, 1281
BstAUI	TGTACA	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	4 cut(s)	683, 754, 1041, 1385
BstDEI	CTNAG	7 cut(s)	381, 398, 420, 650, 1475, 1575, 1619
BstDSI	CCRYGG	1 cut(s)	1176
BstEII	GGTNACC	1 cut(s)	1304
BstF5I	GGATG	2 cut(s)	425, 510
BstFNI	CGCG	5 cut(s)	388, 756, 791, 992, 1235
BstH2I	RGCGCY	3 cut(s)	142, 348, 892
BstHHI	GCGC	6 cut(s)	141, 347, 388, 845, 891, 1235
BstKTI	GATC	7 cut(s)	310, 453, 918, 1328, 1341, 1663, 1678
BstMAI	GTCTC	2 cut(s)	170, 1272
BstMBI	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
BstMCI	CGRYCG	1 cut(s)	1596
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 392, 651, 886, 1078, 1424
BstNI	CCWGG	2 cut(s)	739, 1139
BstPAI	GACNNNNGTC	1 cut(s)	767
BstPI	GGTNACC	1 cut(s)	1304
BstSCI	CCNGG	4 cut(s)	527, 737, 1137, 1595
BstSFI	CTRYAG	1 cut(s)	1390
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	5 cut(s)	388, 756, 791, 992, 1235
BstV1I	GCAGC	7 cut(s)	59, 67, 146, 517, 878, 936, 1566
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	915
BstYI	RGATCY	1 cut(s)	915
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	1135
BsuRI	GGCC	5 cut(s)	875, 999, 1043, 1238, 1631
BtgI	CCRYGG	1 cut(s)	1176
BtgZI	GCGATG	2 cut(s)	304, 1498
BtrI	CACGTC	3 cut(s)	208, 1129, 1336
BtsCI	GGATG	2 cut(s)	425, 510
BtsI	GCAGTG	2 cut(s)	715, 1372
BtsIMutI	CAGTG	2 cut(s)	715, 1372
Cac8I	GCNNGC	4 cut(s)	683, 754, 1041, 1385
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	6 cut(s)	141, 347, 388, 845, 891, 1235
Cfr10I	RCCGGY	3 cut(s)	923, 940, 1018
Cfr13I	GGNCC	6 cut(s)	562, 729, 762, 1016, 1135, 1629
CpoI	CGGWCCG	1 cut(s)	1016
CseI	GACGC	2 cut(s)	709, 1480
Csp6I	GTAC	6 cut(s)	102, 281, 499, 619, 793, 994
CspI	CGGWCCG	1 cut(s)	1016
CviAII	CATG	6 cut(s)	35, 135, 149, 409, 430, 1177
CviQI	GTAC	6 cut(s)	102, 281, 499, 619, 793, 994
DdeI	CTNAG	7 cut(s)	381, 398, 420, 650, 1475, 1575, 1619
DinI	GGCGCC	2 cut(s)	140, 346
DpnI	GATC	7 cut(s)	309, 452, 917, 1327, 1340, 1662, 1677
DpnII	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
DraIII	CACNNNGTG	3 cut(s)	208, 758, 826
DrdI	GACNNNNNNGTC	1 cut(s)	1490
DseDI	GACNNNNNNGTC	1 cut(s)	1490
EaeI	YGGCCR	1 cut(s)	1236
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	942
Ecl136II	GAGCTC	2 cut(s)	417, 1618
Eco130I	CCWWGG	3 cut(s)	348, 1176, 1632
Eco24I	GRGCYC	2 cut(s)	419, 1620
Eco47I	GGWCC	5 cut(s)	562, 729, 762, 1016, 1135
Eco47III	AGCGCT	1 cut(s)	890
Eco53kI	GAGCTC	2 cut(s)	417, 1618
Eco72I	CACGTG	1 cut(s)	826
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	3 cut(s)	869, 953, 971
Eco91I	GGTNACC	1 cut(s)	1304
EcoICRI	GAGCTC	2 cut(s)	417, 1618
EcoO109I	RGGNCCY	2 cut(s)	562, 1135
EcoO65I	GGTNACC	1 cut(s)	1304
EcoRII	CCWGG	2 cut(s)	737, 1137
EcoT14I	CCWWGG	3 cut(s)	348, 1176, 1632
EcoT22I	ATGCAT	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	419, 1620
EgeI	GGCGCC	2 cut(s)	140, 346
EheI	GGCGCC	2 cut(s)	140, 346
ErhI	CCWWGG	3 cut(s)	348, 1176, 1632
Esp3I	CGTCTC	2 cut(s)	170, 1272
FaeI	CATG	6 cut(s)	38, 138, 152, 412, 433, 1180
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	4 cut(s)	362, 575, 775, 1440
FatI	CATG	6 cut(s)	34, 134, 148, 408, 429, 1176
FauI	CCCGC	1 cut(s)	997
FauNDI	CATATG	1 cut(s)	834
FbaI	TGATCA	1 cut(s)	1338
FblI	GTMKAC	2 cut(s)	363, 543
FokI	GGATG	2 cut(s)	412, 497
FriOI	GRGCYC	2 cut(s)	419, 1620
FspBI	CTAG	5 cut(s)	494, 1115, 1310, 1626, 1680
GlaI	GCGC	6 cut(s)	140, 346, 387, 844, 890, 1234
GsaI	CCCAGC	1 cut(s)	1447
HaeII	RGCGCY	3 cut(s)	142, 348, 892
HaeIII	GGCC	5 cut(s)	875, 999, 1043, 1238, 1631
HapII	CCGG	9 cut(s)	474, 529, 924, 941, 1014, 1019, 1275, 1347, 1596
HgaI	GACGC	2 cut(s)	709, 1480
HhaI	GCGC	6 cut(s)	141, 347, 388, 845, 891, 1235
Hin1I	GRCGYC	4 cut(s)	139, 345, 546, 1281
Hin1II	CATG	6 cut(s)	38, 138, 152, 412, 433, 1180
Hin6I	GCGC	6 cut(s)	139, 345, 386, 843, 889, 1233
HinP1I	GCGC	6 cut(s)	139, 345, 386, 843, 889, 1233
HincII	GTYRAC	2 cut(s)	364, 544
HindII	GTYRAC	2 cut(s)	364, 544
HinfI	GANTC	7 cut(s)	403, 464, 1111, 1453, 1531, 1603, 1652
HpaII	CCGG	9 cut(s)	474, 529, 924, 941, 1014, 1019, 1275, 1347, 1596
HphI	GGTGA	6 cut(s)	46, 459, 727, 913, 976, 1460
Hpy166II	GTNNAC	5 cut(s)	8, 364, 544, 619, 1126
Hpy188I	TCNGA	5 cut(s)	651, 1478, 1527, 1554, 1660
Hpy188III	TCNNGA	9 cut(s)	70, 300, 400, 409, 955, 1255, 1270, 1468, 1495
Hpy8I	GTNNAC	5 cut(s)	8, 364, 544, 619, 1126
HpyAV	CCTTC	4 cut(s)	113, 188, 742, 1126
HpyCH4III	ACNGT	4 cut(s)	101, 155, 1492, 1523
HpyCH4IV	ACGT	9 cut(s)	207, 546, 768, 825, 1128, 1281, 1335, 1404, 1644
HpyCH4V	TGCA	4 cut(s)	8, 239, 253, 720
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 392, 651, 886, 1078, 1424
HpyF3I	CTNAG	7 cut(s)	381, 398, 420, 650, 1475, 1575, 1619
HpySE526I	ACGT	9 cut(s)	207, 546, 768, 825, 1128, 1281, 1335, 1404, 1644
Hsp92I	GRCGYC	4 cut(s)	139, 345, 546, 1281
Hsp92II	CATG	6 cut(s)	38, 138, 152, 412, 433, 1180
HspAI	GCGC	6 cut(s)	139, 345, 386, 843, 889, 1233
KasI	GGCGCC	2 cut(s)	138, 344
KflI	GGGWCCC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	1338
Kzo9I	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
LmnI	GCTCC	6 cut(s)	229, 708, 850, 929, 949, 1555
Lsp1109I	GCAGC	7 cut(s)	59, 67, 146, 517, 878, 936, 1566
LweI	GCATC	2 cut(s)	240, 423
MaeI	CTAG	5 cut(s)	494, 1115, 1310, 1626, 1680
MaeII	ACGT	9 cut(s)	207, 546, 768, 825, 1128, 1281, 1335, 1404, 1644
MaeIII	GTNAC	6 cut(s)	826, 982, 1304, 1468, 1481, 1495
MalI	GATC	7 cut(s)	309, 452, 917, 1327, 1340, 1662, 1677
MbiI	CCGCTC	1 cut(s)	970
MboI	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
MboII	GAAGA	5 cut(s)	85, 165, 346, 1540, 1612
MflI	RGATCY	1 cut(s)	915
MhlI	GDGCHC	6 cut(s)	10, 419, 647, 934, 1389, 1620
MluCI	AATT	8 cut(s)	40, 327, 567, 577, 657, 960, 1373, 1610
Mly113I	GGCGCC	2 cut(s)	139, 345
MlyI	GAGTC	3 cut(s)	458, 1105, 1462
MmeI	TCCRAC	2 cut(s)	120, 1505
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	3 cut(s)	189, 813, 1684
MslI	CAYNNNNRTG	3 cut(s)	630, 1299, 1493
MspA1I	CMGCKG	1 cut(s)	949
MspI	CCGG	9 cut(s)	474, 529, 924, 941, 1014, 1019, 1275, 1347, 1596
MspR9I	CCNGG	4 cut(s)	529, 739, 1139, 1597
Mva1269I	GAATGC	1 cut(s)	1250
MvaI	CCWGG	2 cut(s)	739, 1139
MvnI	CGCG	5 cut(s)	388, 756, 791, 992, 1235
MwoI	GCNNNNNNNGC	6 cut(s)	44, 392, 651, 886, 1078, 1424
NarI	GGCGCC	2 cut(s)	139, 345
NciI	CCSGG	2 cut(s)	529, 1597
NcoI	CCATGG	1 cut(s)	1176
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
NlaIII	CATG	6 cut(s)	38, 138, 152, 412, 433, 1180
NlaIV	GGNNCC	8 cut(s)	140, 225, 346, 563, 564, 763, 945, 1551
NmuCI	GTSAC	5 cut(s)	826, 982, 1468, 1481, 1495
NsiI	ATGCAT	1 cut(s)	255
OliI	CACNNNNGTG	2 cut(s)	630, 1493
PaeR7I	CTCGAG	2 cut(s)	869, 953
PagI	TCATGA	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	6 cut(s)	459, 540, 543, 549, 552, 1002
PctI	GAATGC	1 cut(s)	1250
PfeI	GAWTC	4 cut(s)	403, 1531, 1603, 1652
Pfl23II	CGTACG	2 cut(s)	792, 993
PleI	GAGTC	3 cut(s)	458, 1105, 1461
PluTI	GGCGCC	2 cut(s)	142, 348
PmaCI	CACGTG	1 cut(s)	826
PmlI	CACGTG	1 cut(s)	826
PpsI	GAGTC	3 cut(s)	458, 1105, 1461
Ppu21I	YACGTR	1 cut(s)	826
PpuMI	RGGWCCY	2 cut(s)	562, 1135
PshAI	GACNNNNGTC	1 cut(s)	767
Psp124BI	GAGCTC	2 cut(s)	419, 1620
Psp1406I	AACGTT	1 cut(s)	1404
Psp5II	RGGWCCY	2 cut(s)	562, 1135
Psp6I	CCWGG	2 cut(s)	737, 1137
PspCI	CACGTG	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	1304
PspFI	CCCAGC	1 cut(s)	1443
PspGI	CCWGG	2 cut(s)	737, 1137
PspLI	CGTACG	2 cut(s)	792, 993
PspN4I	GGNNCC	8 cut(s)	140, 225, 346, 563, 564, 763, 945, 1551
PspPI	GGNCC	6 cut(s)	562, 729, 762, 1016, 1135, 1629
PspPPI	RGGWCCY	2 cut(s)	562, 1135
PspXI	VCTCGAGB	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	915
RsaI	GTAC	6 cut(s)	103, 282, 500, 620, 794, 995
RsaNI	GTAC	6 cut(s)	102, 281, 499, 619, 793, 994
RseI	CAYNNNNRTG	3 cut(s)	630, 1299, 1493
Rsr2I	CGGWCCG	1 cut(s)	1016
RsrII	CGGWCCG	1 cut(s)	1016
SacI	GAGCTC	2 cut(s)	419, 1620
SalI	GTCGAC	2 cut(s)	362, 542
SaqAI	TTAA	3 cut(s)	189, 813, 1684
Sau3AI	GATC	7 cut(s)	307, 450, 915, 1325, 1338, 1660, 1675
Sau96I	GGNCC	6 cut(s)	562, 729, 762, 1016, 1135, 1629
SchI	GAGTC	3 cut(s)	458, 1105, 1462
ScrFI	CCNGG	4 cut(s)	529, 739, 1139, 1597
SduI	GDGCHC	6 cut(s)	10, 419, 647, 934, 1389, 1620
SfaNI	GCATC	2 cut(s)	240, 423
SfcI	CTRYAG	1 cut(s)	1390
SfoI	GGCGCC	2 cut(s)	140, 346
Sfr274I	CTCGAG	2 cut(s)	869, 953
SgrAI	CRCCGGYG	1 cut(s)	923
SgrDI	CGTCGACG	1 cut(s)	542
SinI	GGWCC	5 cut(s)	562, 729, 762, 1016, 1135
SlaI	CTCGAG	2 cut(s)	869, 953
SmiMI	CAYNNNNRTG	3 cut(s)	630, 1299, 1493
SmlI	CTYRAG	3 cut(s)	640, 869, 953
SmoI	CTYRAG	3 cut(s)	640, 869, 953
Sse9I	AATT	8 cut(s)	40, 327, 567, 577, 657, 960, 1373, 1610
SspDI	GGCGCC	2 cut(s)	138, 344
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	5 cut(s)	494, 1115, 1310, 1626, 1680
SstI	GAGCTC	2 cut(s)	419, 1620
StyD4I	CCNGG	4 cut(s)	527, 737, 1137, 1595
StyI	CCWWGG	3 cut(s)	348, 1176, 1632
TaaI	ACNGT	4 cut(s)	101, 155, 1492, 1523
TaiI	ACGT	9 cut(s)	210, 549, 771, 828, 1131, 1284, 1338, 1407, 1647
TaqII	GACCGA	1 cut(s)	1019
TasI	AATT	8 cut(s)	40, 327, 567, 577, 657, 960, 1373, 1610
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	6 cut(s)	752, 970, 1238, 1418, 1435, 1540
TfiI	GAWTC	4 cut(s)	403, 1531, 1603, 1652
Tru1I	TTAA	3 cut(s)	189, 813, 1684
Tru9I	TTAA	3 cut(s)	189, 813, 1684
TscAI	CASTG	2 cut(s)	722, 1372
TseFI	GTSAC	5 cut(s)	826, 982, 1468, 1481, 1495
TseI	GCWGC	7 cut(s)	47, 80, 159, 505, 891, 949, 1579
Tsp45I	GTSAC	5 cut(s)	826, 982, 1468, 1481, 1495
TspDTI	ATGAA	2 cut(s)	29, 1226
TspGWI	ACGGA	1 cut(s)	1514
TspRI	CASTG	2 cut(s)	722, 1372
VneI	GTGCAC	1 cut(s)	6
VpaK11BI	GGWCC	5 cut(s)	562, 729, 762, 1016, 1135
XapI	RAATTY	1 cut(s)	1610
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 436
XhoI	CTCGAG	2 cut(s)	869, 953
XmiI	GTMKAC	2 cut(s)	363, 543
XspI	CTAG	5 cut(s)	494, 1115, 1310, 1626, 1680
ZraI	GACGTC	2 cut(s)	547, 1282
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.