Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

58768077 .. 58771909

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTGCCAGCATGGATTAAAATTCCCATGTCGGTTGCCATACCATTTGGAGCCTTTGAAAAGGTCATATTAGAAGATGTTAATAAGAGGCTTCCAAGAAAGTATGTGAAGGAAAATGGAGATGAGCTATCAAATCCTGCACATCTTAAGTTTCGCGGTAGAGAATGGGCAATGAAACTTAAAAGATACAAAGATGAGGCTTGGTTTGACAAGGGTTGGGAAGAGTTCTCAAACTTTTACTCTTTTGAGTACAACGACCTCCTCATTTTTGGATATGAAGGCAATTCAACATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

98

Amino Acids

11.69

Weight (kDa)

6.59

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	30 - 98	9.5e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	59, 288
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	295
BfrI	CTTAAG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	6, 52
Bse3DI	GCAATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	6, 52
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	12, 28
CviJI	RGCY	4 cut(s)	53, 91, 127, 200
CviKI_1	RGCY	4 cut(s)	53, 91, 127, 200
CviQI	GTAC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
FaeI	CATG	2 cut(s)	15, 31
FaiI	YATR	6 cut(s)	13, 29, 41, 68, 105, 276
FatI	CATG	2 cut(s)	11, 27
FspBI	CTAG	1 cut(s)	295
Hin1II	CATG	2 cut(s)	15, 31
HpyAV	CCTTC	2 cut(s)	103, 272
HpyCH4V	TGCA	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	15, 31
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	2 cut(s)	21, 150
MaeI	CTAG	1 cut(s)	295
MboII	GAAGA	2 cut(s)	86, 233
MluCI	AATT	2 cut(s)	21, 283
MnlI	CCTC	4 cut(s)	81, 190, 269, 272
MseI	TTAA	4 cut(s)	18, 81, 147, 180
MspCI	CTTAAG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	156
NlaIII	CATG	2 cut(s)	15, 31
NlaIV	GGNNCC	2 cut(s)	6, 52
PspN4I	GGNNCC	2 cut(s)	6, 52
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	18, 81, 147, 180
SetI	ASST	3 cut(s)	66, 129, 261
SgeI	CNNG	8 cut(s)	20, 24, 40, 108, 149, 167, 213, 223
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	21, 283
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	295
TasI	AATT	2 cut(s)	21, 283
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	4 cut(s)	18, 81, 147, 180
Tru9I	TTAA	4 cut(s)	18, 81, 147, 180
TspDTI	ATGAA	2 cut(s)	188, 291
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.