Rh7DG425500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014861
Physical Location & Seq
Reverse (-)
60093352 .. 60094146
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG425500.1

Sequence Viewer

Length: 306 bp
ATGCAGAAGGACATGGTTCTACTGCGAATTATAACTCAAGTTATGGCTCTCAAATGCCTGGACGTACAATTCATATGGTGGAAGTTGAGGATTATATGGTGGGGGGATGTACAGCAAGTTGCGACAGCATGTATGCTGGAGGTTCTGGTGTGCTCTACGGGGACTACATTGAGGGACCGAAGGCCACTTCTACTGGATCTTGGTAAAATGTTTGGGCACAAAAGTTCATTTGTTGAGAGATTGTTCATTGACAGAATGGTACCAGTTGCAGTGATATGGTGCCAAACTAATTACAATTTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.89

Weight (kDa)

9.34

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 259, 279
AclWI GGATC 1 cut(s) 204
AfaI GTAC 3 cut(s) 66, 111, 261
AjnI CCWGG 1 cut(s) 57
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 2 cut(s) 259, 279
Bbv12I GWGCWC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 176, 261, 281
BmrFI CCNGG 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 198, 263
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 2 cut(s) 198, 263
BseSI GKGCMC 1 cut(s) 219
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 2 cut(s) 259, 279
BsiHKAI GWGCWC 1 cut(s) 155
BslFI GGGAC 2 cut(s) 175, 188
BsmFI GGGAC 2 cut(s) 175, 188
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 155, 219
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 176, 261, 281
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 259, 279
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 2 cut(s) 198, 263
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 109
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 65, 110, 260
CviAII CATG 2 cut(s) 13, 129
CviJI RGCY 2 cut(s) 47, 184
CviKI_1 RGCY 2 cut(s) 47, 184
CviQI GTAC 3 cut(s) 65, 110, 260
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraI TTTAAA 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 16, 132
FaqI GGGAC 2 cut(s) 175, 188
FatI CATG 2 cut(s) 12, 128
FauNDI CATATG 1 cut(s) 74
FokI GGATG 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 2 cut(s) 16, 132
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 4, 269
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 16, 132
KpnI GGTACC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 44, 71, 122, 131, 179, 276
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 155, 219
MluCI AATT 4 cut(s) 27, 68, 289, 295
MnlI CCTC 3 cut(s) 81, 133, 165
MseI TTAA 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 74
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 16, 132
NlaIV GGNNCC 3 cut(s) 176, 261, 281
NspI RCATGY 1 cut(s) 132
PsiI TTATAA 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 176, 261, 281
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 3 cut(s) 66, 111, 261
RsaNI GTAC 3 cut(s) 65, 110, 260
SaqAI TTAA 1 cut(s) 299
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 2 cut(s) 155, 219
SetI ASST 2 cut(s) 66, 144
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 4 cut(s) 27, 68, 289, 295
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 66
TaqII GACCGA 1 cut(s) 192
TasI AATT 4 cut(s) 27, 68, 289, 295
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 3 cut(s) 61, 216, 235
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.