Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

53931162 .. 53936293

Gene Structure 5132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTGCCAGCATGGATTAAAATTCCCATGTCAGTTGCCATACCATTTGGAGCCTTTGAAAAGGTCATATTAGAAGATGTTAATAAGAGGCTTCCAAGAAAGTATGTGAAGGACCATGGAGATGAGCTATCAAATCCTGCACATCTAAAGTTTCGCGGTAGAGAATGGGCAATGAAACTTAAAAGATACAAAGATGAGGCTTGGTTTGACAAGGGTTGGGAAGAGTTCTCAAGCTTTTACTCTTTTGAGTACAACGACCTCCTCATTTTTGGATATGAAGGCAATTCAACATTCCAGGTTTCCCTTTTCGATAAAATACTGAAGTTGATAGAAACTGATGCAGATGATTTTCAACCAAATCCTCTGCTTCATAGCAGAACTAGGACAAGTTCAAGTGGTGGTAAAGCAGAAGTACAAGAGGAGGCTCCAAGTCTTGAGAAATCACAAATAAAAACCAAAGTTACACATAGGTCCAGATCAGAATTGAAAAGTAAGGAATATATATGCAATTTCTTTTCTTTTTTCTTTTTTACGTTACCATGTATTTGCTTGCCATTCGAGTTTATGAGGACACATCTTGTTAATGAATCTGGTGAGGTTACCCTTCAGCTTTCGGATGGAAGAATTTGGCACGTTGAATTGAAATGTGAAAACTCAAGAGCCGAATTCCAGTCTGGTTGGTGGGATTTTATGCAAGACAATCATTTAAAAGTTGGTGATGTATGTGTTTTTATGTTGATTGACCATGCTAGACTTCTATTTGAAGTTGTCATTTTCCACAAGGACCGCACCATAGAACCTGTAAATTGCATCTTGCCAGCAGAGACTGACTATATAGCATATCACCTCCACTCTTGGGATGGACCTGAAGACACCGATGAAGATAACGGTGATAAAGAAGACAGCAACGAAAATGATGAGGACAATGATAATGATGTTGCTGAAGACAACCCTTCTTTCAAAATTGTCATACGACCATCTTATATCAAGCGTCTCTTGGTAACCATTGTATTTATAGATCTTGTCTTAATCAACAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

347

Amino Acids

40.52

Weight (kDa)

5.04

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	30 - 105	5e-09	B3 DNA binding domain
B3	PF02362	182 - 259	3.9e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	156, 787
AcsI	RAATTY	3 cut(s)	21, 624, 665
AcuI	CTGAAG	4 cut(s)	341, 590, 888, 963
AfaI	GTAC	2 cut(s)	251, 414
AfiI	CCNNNNNNNGG	1 cut(s)	856
AgsI	TTSAA	9 cut(s)	59, 288, 353, 393, 487, 638, 643, 764, 961
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	127, 234, 610
AluI	AGCT	3 cut(s)	127, 234, 610
Alw26I	GTCTC	2 cut(s)	818, 998
AlwNI	CAGNNNCTG	1 cut(s)	827
ApoI	RAATTY	3 cut(s)	21, 624, 665
AspS9I	GGNCC	4 cut(s)	112, 471, 784, 863
AsuHPI	GGTGA	4 cut(s)	605, 728, 836, 902
AvaII	GGWCC	4 cut(s)	112, 471, 784, 863
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	876, 906, 951
BccI	CCATC	3 cut(s)	611, 854, 985
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	818, 998
BfaI	CTAG	2 cut(s)	381, 750
BglII	AGATCT	1 cut(s)	1018
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	4 cut(s)	112, 471, 784, 863
BmgT120I	GGNCC	4 cut(s)	112, 471, 784, 863
BmiI	GGNNCC	3 cut(s)	6, 52, 426
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	328, 819
BpiI	GAAGAC	3 cut(s)	876, 906, 951
BpuEI	CTTGAG	3 cut(s)	214, 455, 640
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	856
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	622, 865
BseLI	CCNNNNNNNGG	1 cut(s)	856
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	251, 434
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	856
BsmAI	GTCTC	2 cut(s)	818, 998
BsmBI	CGTCTC	1 cut(s)	998
Bsp143I	GATC	2 cut(s)	476, 1018
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	156, 787
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	6, 52, 426
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	476, 1018
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	9, 551, 819
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	2 cut(s)	598, 1000
BstF5I	GGATG	2 cut(s)	622, 865
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	479, 1021
BstMAI	GTCTC	2 cut(s)	818, 998
BstMBI	GATC	2 cut(s)	476, 1018
BstNI	CCWGG	1 cut(s)	296
BstPI	GGTNACC	2 cut(s)	598, 1000
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	3 cut(s)	876, 906, 951
BstX2I	RGATCY	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1018
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	622, 865
Cac8I	GCNNGC	3 cut(s)	9, 551, 819
CaiI	CAGNNNCTG	1 cut(s)	827
Cfr13I	GGNCC	4 cut(s)	112, 471, 784, 863
CseI	GACGC	1 cut(s)	980
Csp6I	GTAC	2 cut(s)	250, 413
CviAII	CATG	5 cut(s)	12, 28, 116, 540, 746
CviJI	RGCY	8 cut(s)	53, 91, 127, 200, 234, 425, 610, 662
CviKI_1	RGCY	8 cut(s)	53, 91, 127, 200, 234, 425, 610, 662
CviQI	GTAC	2 cut(s)	250, 413
DpnI	GATC	2 cut(s)	478, 1020
DpnII	GATC	2 cut(s)	476, 1018
DraI	TTTAAA	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	4 cut(s)	112, 471, 784, 863
Eco57I	CTGAAG	4 cut(s)	341, 590, 888, 963
Eco91I	GGTNACC	2 cut(s)	598, 1000
EcoO65I	GGTNACC	2 cut(s)	598, 1000
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	998
FaeI	CATG	5 cut(s)	15, 31, 119, 543, 749
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FatI	CATG	5 cut(s)	11, 27, 115, 539, 745
FokI	GGATG	2 cut(s)	629, 872
FspBI	CTAG	2 cut(s)	381, 750
HgaI	GACGC	1 cut(s)	980
Hin1II	CATG	5 cut(s)	15, 31, 119, 543, 749
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	4 cut(s)	605, 728, 836, 902
Hpy188I	TCNGA	2 cut(s)	481, 616
Hpy188III	TCNNGA	3 cut(s)	434, 474, 657
HpyAV	CCTTC	4 cut(s)	103, 272, 614, 963
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4IV	ACGT	2 cut(s)	533, 633
HpyCH4V	TGCA	5 cut(s)	140, 341, 507, 694, 810
HpySE526I	ACGT	2 cut(s)	533, 633
Hsp92II	CATG	5 cut(s)	15, 31, 119, 543, 749
Kzo9I	GATC	2 cut(s)	476, 1018
LmnI	GCTCC	2 cut(s)	50, 430
LweI	GCATC	2 cut(s)	328, 819
MaeI	CTAG	2 cut(s)	381, 750
MaeII	ACGT	2 cut(s)	533, 633
MaeIII	GTNAC	4 cut(s)	460, 534, 598, 1000
MalI	GATC	2 cut(s)	478, 1020
MboI	GATC	2 cut(s)	476, 1018
MboII	GAAGA	7 cut(s)	86, 233, 633, 881, 893, 911, 956
MflI	RGATCY	1 cut(s)	1018
MseI	TTAA	6 cut(s)	18, 81, 180, 582, 707, 1028
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	476, 1018
NlaIII	CATG	5 cut(s)	15, 31, 119, 543, 749
NlaIV	GGNNCC	3 cut(s)	6, 52, 426
PfeI	GAWTC	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	2 cut(s)	598, 1000
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	6, 52, 426
PspPI	GGNCC	4 cut(s)	112, 471, 784, 863
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	1018
RsaI	GTAC	2 cut(s)	251, 414
RsaNI	GTAC	2 cut(s)	250, 413
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	18, 81, 180, 582, 707, 1028
Sau3AI	GATC	2 cut(s)	476, 1018
Sau96I	GGNCC	4 cut(s)	112, 471, 784, 863
ScrFI	CCNGG	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	328, 819
SinI	GGWCC	4 cut(s)	112, 471, 784, 863
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	229, 434, 655
SmoI	CTYRAG	3 cut(s)	229, 434, 655
SsiI	CCGC	2 cut(s)	156, 787
SspMI	CTAG	2 cut(s)	381, 750
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	890
TaiI	ACGT	2 cut(s)	536, 636
TaqI	TCGA	2 cut(s)	309, 558
TatI	WGTACW	2 cut(s)	249, 412
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	6 cut(s)	18, 81, 180, 582, 707, 1028
Tru9I	TTAA	6 cut(s)	18, 81, 180, 582, 707, 1028
TspDTI	ATGAA	5 cut(s)	188, 291, 359, 600, 894
VpaK11BI	GGWCC	4 cut(s)	112, 471, 784, 863
XapI	RAATTY	3 cut(s)	21, 624, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XspI	CTAG	2 cut(s)	381, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.