Rh7CG456100

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014861
Physical Location & Seq
Reverse (-)
59977117 .. 59977788
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG456100.1

Sequence Viewer

Length: 555 bp
ATGGACCTGAAGACATCGATGAAGATAACGGTGATAAAGAAGACAGCAACGAAAATGATGAGGACAATGATAAACCCTTCTTTCAAAATTGTCATACAACCATCTTATATCAAGCGTCTCTTGTGGCTGCCTTCTAAGTTTTTCCAGACACATCTTACTTCGGACACTACATATGCTACCCTTTGTGTTTCGGGAGGGAAGAGAACTTGGTCTGTTAAATTAAATAATGAAGGAGCAAGAGCTAAATTTCAGTTTGGTTGGAGTAAGTTCGTGCAAGATAATAATTTGAAAGTCGGAGACGTGTGCAACAATGATCACAAACATGCTGATAGAGTCTCATTTGAAGTAGTCATAGAAGCTGGGAATACCACGCTATCCTTAGGTCAGTTATTTATTATTTTGGAATTGTTATTTGATGGAAGTGCCAAAAAGACTAACTATGCTATTGTTCCTTCCATTATAACTACAACTGCAGACAATGATGATGATGAAAATGAAGATTCAGAATTGGTTGAATCTTCATTAGCCTCACAAGAGAAAGAGAACAGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

184

Amino Acids

20.73

Weight (kDa)

7.74

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 28 - 103 2.4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 4 cut(s) 85, 289, 344, 515
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 2 cut(s) 242, 359
AluI AGCT 2 cut(s) 242, 359
Alw26I GTCTC 3 cut(s) 122, 291, 340
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 17, 47
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 109, 410
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 3 cut(s) 122, 291, 340
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 4
BpiI GAAGAC 2 cut(s) 17, 47
Bsa29I ATCGAT 1 cut(s) 17
Bse21I CCTNAGG 1 cut(s) 379
BseCI ATCGAT 1 cut(s) 17
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 17
BsmAI GTCTC 3 cut(s) 122, 291, 340
BsmBI CGTCTC 2 cut(s) 122, 291
Bsp143I GATC 1 cut(s) 313
BspDI ATCGAT 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 475
BssMI GATC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 135, 379
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 3 cut(s) 122, 291, 340
BstMBI GATC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 2 cut(s) 17, 47
Bsu15I ATCGAT 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 379
BsuTUI ATCGAT 1 cut(s) 17
BtrI CACGTC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 17
CseI GACGC 1 cut(s) 104
CviAII CATG 1 cut(s) 323
CviJI RGCY 4 cut(s) 127, 242, 359, 527
CviKI_1 RGCY 4 cut(s) 127, 242, 359, 527
DdeI CTNAG 2 cut(s) 135, 379
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 379
Esp3I CGTCTC 2 cut(s) 122, 291
FaeI CATG 1 cut(s) 326
FaiI YATR 8 cut(s) 95, 108, 172, 174, 324, 353, 441, 461
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 322
FauNDI CATATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 363
HgaI GACGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 326
HinfI GANTC 3 cut(s) 333, 500, 515
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 163, 296, 505
Hpy188III TCNNGA 2 cut(s) 145, 192
HpyAV CCTTC 4 cut(s) 87, 141, 224, 462
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 274, 306, 473
HpyF3I CTNAG 2 cut(s) 135, 379
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 20, 158, 345, 532
Lsp1109I GCAGC 1 cut(s) 114
MaeII ACGT 1 cut(s) 300
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 6 cut(s) 22, 34, 52, 211, 509, 510
MluCI AATT 6 cut(s) 87, 218, 245, 283, 404, 506
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 2 cut(s) 239, 274
MnlI CCTC 3 cut(s) 54, 188, 538
MseI TTAA 2 cut(s) 216, 221
MslI CAYNNNNRTG 1 cut(s) 321
NdeI CATATG 1 cut(s) 172
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 326
NspI RCATGY 1 cut(s) 326
PfeI GAWTC 2 cut(s) 500, 515
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PsiI TTATAA 1 cut(s) 461
PspFI CCCAGC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 216, 221
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 342
SetI ASST 6 cut(s) 9, 244, 303, 361, 385, 551
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 6 cut(s) 87, 218, 245, 283, 404, 506
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 17
TasI AATT 6 cut(s) 87, 218, 245, 283, 404, 506
TfiI GAWTC 2 cut(s) 500, 515
Tru1I TTAA 2 cut(s) 216, 221
Tru9I TTAA 2 cut(s) 216, 221
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 5 cut(s) 35, 243, 504, 510, 510
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.